Estimating vertical plant area density profile and growth parameters of a wheat canopy at different growth stages using three-dimensional portable lidar imaging

Vertical plant area density profiles of wheat (Triticum aestivum L.) canopy at different growth stages (tillering, stem elongation, flowering, and ripening stages) were estimated using high-resolution portable scanning lidar based on the voxel-based canopy profiling method. The canopy was scanned three-dimensionally by laser beams emitted from several measuring points surrounding the canopy. At the ripening stage, the central azimuth angle was inclined about 23^° to the row direction to avoid obstruction of the beam into the lower canopy by the upper part. Plant area density profiles were estimated, with root mean square errors of 0.28–0.79 m² m^?3 at each growth stage and of 0.45 m² m^?3 across all growth stages. Plant area index was also estimated, with absolute errors of 4.7%–7.7% at each growth stage and of 6.1% across all growth stages. Based on lidar-derived plant area density, the area of each type of organ (stem, leaves, ears) per unit ground area was related to the actual dry weight of each organ type, and regression equations were obtained. The standard errors of the equations were 4.1 g m^?2 for ears and 26.6 g m^?2 for stems and leaves. Based on these equations, the estimated total dry weight was from 63.3 to 279.4 g m^?2 for ears and from 35.8 to 375.3 g m^?2 for stems and leaves across the growth stages. Based on the estimated dry weight at ripening and the ratio of carbon to dry weight in wheat plants, the carbon stocks were 76.3 g C m^?2 for grain, 225.0 g C m^?2 for aboveground residue, and 301.3 g C m^?2 for all aboveground organs.     

Horizontal distribution and population dynamics of the dominant mysid Hyperacanthomysis longirostris along a temperate macrotidal estuary (Chikugo River estuary, Japan)

The estuarine turbidity maximum (ETM) that develops in the lower salinity areas of macrotidal estuaries has been considered as an important nursery for many fish species. Mysids are one of the dominant organisms in the ETM, serving as a key food source for juvenile fish. To investigate the horizontal distribution and population dynamics of dominant mysids in relation to the fluctuation of physical conditions (temperature, salinity, turbidity, and freshwater discharge), we conducted monthly sampling (hauls of a ring net in the surface water) along the macrotidal Chikugo River estuary in Japan from May 2005 to December 2006. Hyperacanthomysis longirostris was the dominant mysid in the estuary, usually showing peaks of density and biomass in or close to the ETM (salinity 1–10). In addition, intra-specific differences (life-cycle stage, sex, and size) in horizontal distribution were found along the estuary. Larger males and females, particularly gravid females, were distributed upstream from the center of distribution where juveniles were overwhelmingly dominant. Juveniles increased in size toward the sea in marked contrast with males and females. The findings suggest a possible system of population maintenance within the estuary; gravid females release juveniles in the upper estuary, juveniles grow during downstream transport, young males and females mature during the upstream migration. Density and biomass were primarily controlled by seasonal changes of temperature, being high at intermediate temperatures (ca. 15–25 °C in late spring and fall) and being low at the extreme temperatures (ca. 10 °C in midwinter and 30 °C in midsummer). High density (up to 666 ind. m⁻³) and biomass (up to 168 mg dry weight m⁻³) of H. longirostris were considered to be comparable with those of copepods in the estuary.     

Food sources of the pearl oyster in coastal ecosystems of Japan: Evidence from diet and stable isotope analysis

We estimated the composition of two food sources for the cultured pearl oyster Pinctada fucata martensii using stable isotopes and stomach content analysis in the coastal areas of the Uwa Sea, Japan. The δ¹³C values of oysters (−17.5 to −16.8‰) were intermediate between that of particulate organic matter (POM, −20.2 to −19.1‰) and attached microalgae on pearl cages (−13.0‰). An isotope mixing model suggested that oysters were consuming 78% POM (mainly phytoplankton) and 22% attached microalgae. The attached microalgal composition of the stomach content showed a strong resemblance to the composition of that estimated through the isotope mixing model, suggesting preferential utilization of specific components is unlikely in this species. These results indicate that P. fucata martensii feed on a mixture of phytoplankton and attached microalgae, and that the attached microalgae on pearl cages can serve as an important additional food source.     

Phototropic adjustment of the foliaceous coral Echinopora lamellosa in Palau

We tested the hypothesis that foliose plates of Echinopora lamellosa (Esper, 1795) adjust their primary growth direction (or slope from the horizontal) when irradiance (light) is limiting. This hypothesis was tested at a coral-reef locality that is shaded daily by steep adjacent hills, restricting direct light to only a few hours each day (Iwayama Bay, Palau). The angle at which colonies received maximum light was measured using acetate film, and was compared with modeled estimates (using a simple global-light model). We show strong relationships between light and primary-colony gradients; with the foliose plates acting as parabolic antennae, predictably adjusting their primary gradients to optimize light capture.     

Iron, manganese and aluminum in upper waters of the western South Pacific Ocean and its adjacent seas

Total dissolvable iron, manganese and aluminum distributions in upper waters were determined in the western South Pacific, Solomon Sea, Coral Sea, and Tasman Sea. In these oceanic regions, the surface aluminum distributions well reflect the atmospheric deposition pattern of mineral dust in the western South Pacific reported previously. Surface manganese distributions derive mainly from lateral transportation from the coastal sediments of western tropical islands. Compared to Mn and Al, the Fe distributions reflect the nutrient cycle in upper waters. Iron limitation over the vast South Pacific, as revealed by physiological features of phytoplankton, seems to be caused by low atmospheric dust deposition and low Fe:N ratios in deep waters. In the western South Pacific, with its unique geographic and oceanographic settings, the local sources of trace metals might considerably affect their biogeochemical cycles.     

Steric sea level changes estimated from historical ocean subsurface temperature and salinity analyses

An historical objective analysis of subsurface temperature and salinity was carried out on a monthly basis from 1945 to 2003 using the latest observational databases and a sea surface temperature analysis. In addition, steric sea level changes were mainly examined using outputs of the objective analyses. The objective analysis is a revised version of Ishii et al. and is available at 16 levels in the upper 700 m depth. Artificial errors in the previous analysis during the 1990s have been worked out in the present analysis. The steric sea level computed from the temperature analysis has been verified with tide gauge observations and TOPEX/Poseidon sea surface height data. A correction for crustal movement is applied for tide gauge data along the Japanese coast. The new analysis is suitable for the discussion of global warming. Validation against the tide gauge reveals that the amplitude of thermosteric sea level becomes larger and the agreement improves in comparison with the previous analysis. A substantial part of local sea level rise along the Japanese coast appears to be explained by the thermosteric effect. The thermal expansion averaged in all longitudes from 60°S to 60°N explains at most half of recent sea level rise detected by satellite observation during the last decade. Considerable uncertainties remain in steric sea level, particularly over the southern oceans. Temperature changes within MLD make no effective contribution to steric sea level changes along the Antarctic Circumpolar Current. According to statistics using only reliable profiles of the temperature and salinity analyses, salinity variations are intrinsically important to steric sea level changes in high latitudes and in the Atlantic Ocean. Although data sparseness is severe even in the latest decade, linear trends of global mean thermosteric and halosteric sea level for 1955 to 2003 are estimated to be 0.31 ± 0.07 mm/yr and 0.04 ± 0.01 mm/yr, respectively. These estimates are comparable to those of the former studies.     

Rb-Sr and Sm-Nd Mineral Isochron Ages of the Metamorphic Rocks in the Namaqualand Metamorphic Complex, South Africa

Rb-Sr and Sm-Nd isotopic studies were carried out for metamorphic rocks in the Namaqualand Metamorphic Complex, South Africa. The metamorphic rocks give the Rb-Sr mineral isochron ages (whole-rock - biotite - felsic fractions) of 844±85 Ma and 811.6±6.6 Ma for the lower granulite zone and of 776.5±5.4 Ma for the upper granulite zone. The rocks yield the Sm-Nd mineral isochron ages of 1071±18 Ma (whole-rock - garnet - felsic fractions) and 1067±158 Ma (whole-rock - hornblende - biotite rich fraction - felsic fractions) for the lower granulite zone and of 1052.0±3.6 Ma and 1002.5±1.4 Ma (whole-rock - garnet - felsic fractions) for the upper granulite zone. These age data suggest that the granulite facies metamorphism took place at 1060-1000 Ma, and that the rocks cooled down at 850-780 Ma. The Sr and Nd isotopic compositions of metamorphic rocks are different between the lower and upper granulite zones.     

Flux‐Free Fusion of Silicate Rock Preceding Acid Digestion for ICP‐MS Bulk Analysis

We present a new method for the decomposition of silicate rocks by flux‐free fusion in preparation for whole‐rock trace element determination (Sc, Rb, Sr, Y, Zr, Nb, Cs, Ba, rare earth elements and Hf) that is especially applicable to zircon‐bearing felsic rocks. The method was verified by analyses of RMs of mafic (JB‐1a, JB‐2, JGb‐1) and felsic rocks (JG‐3, JR‐3, JSd‐1, GSP‐2, G‐2). Pellets of powdered sample (up to 500 mg) without flux were weighed and placed in a clean platinum crucible. The samples were then fused in a Siliconit® tube furnace and quenched to room temperature. The optimum condition for the fusion of granitic rock was determined to be heating for 2–3 min at 1600 °C. The fused glass in the platinum crucible after heating was decomposed using HF and HClO₄ in a Teflon® beaker. Decomposed and diluted sample solutions were analysed using a quadrupole inductively coupled plasma‐mass spectrometer. Replicate analyses (n = 4 or 5) of the RMs revealed that analytical uncertainties were generally < 3% for all elements except Zr and Hf (～ 6%) in JG‐3. These higher uncertainties may be attributed to sample heterogeneity. Our analytical results for the RMs agreed well with recommended concentrations and recently published concentrations, indicating complete decomposition of our rock samples during fusion.     

Seasonal variation of the ITCZ and its characteristics over central Africa

We investigated the seasonal march of the Intertropical Convergence Zone (ITCZ) shown by the 22 coupled general circulation models of the 20th Century Climate in Coupled Models experiment in seven regions (Africa, Indian Ocean, western Pacific, central Pacific, eastern Pacific, South America, and Atlantic Ocean). Inter-model differences in the seasonal march of the ITCZ over Africa (10?C40°E) were significantly smaller than those over other regions. This finding indicates that the seasonal march of the ITCZ over Africa is insensitive to differences in model physics and resolution and suggests that the seasonal march of the African ITCZ is controlled by robust and simple mechanisms. Motivated by this result, we tried to understand the process of the seasonal march of the ITCZ over central Africa (15?C30°E) based on an analysis of ERA-40 data. The analysis results revealed the following features of the ITCZ in this region: (1) The ITCZ itself produces large convective available potential energy that generates deep convection. (2) The abundant water vapor within the ITCZ is maintained by horizontal moisture flux. (3) Outside but near the ITCZ, shallow convection exists and may act to pre-moisten deep convection in spring and autumn. (4) The seasonal change of the ITCZ is preceded by that of the vertical moist instability in the lower free atmosphere caused by the seasonal change in insolation.