Estimating vertical plant area density profile and growth parameters of a wheat canopy at different growth stages using three-dimensional portable lidar imaging

Vertical plant area density profiles of wheat (Triticum aestivum L.) canopy at different growth stages (tillering, stem elongation, flowering, and ripening stages) were estimated using high-resolution portable scanning lidar based on the voxel-based canopy profiling method. The canopy was scanned three-dimensionally by laser beams emitted from several measuring points surrounding the canopy. At the ripening stage, the central azimuth angle was inclined about 23^° to the row direction to avoid obstruction of the beam into the lower canopy by the upper part. Plant area density profiles were estimated, with root mean square errors of 0.28–0.79 m² m^?3 at each growth stage and of 0.45 m² m^?3 across all growth stages. Plant area index was also estimated, with absolute errors of 4.7%–7.7% at each growth stage and of 6.1% across all growth stages. Based on lidar-derived plant area density, the area of each type of organ (stem, leaves, ears) per unit ground area was related to the actual dry weight of each organ type, and regression equations were obtained. The standard errors of the equations were 4.1 g m^?2 for ears and 26.6 g m^?2 for stems and leaves. Based on these equations, the estimated total dry weight was from 63.3 to 279.4 g m^?2 for ears and from 35.8 to 375.3 g m^?2 for stems and leaves across the growth stages. Based on the estimated dry weight at ripening and the ratio of carbon to dry weight in wheat plants, the carbon stocks were 76.3 g C m^?2 for grain, 225.0 g C m^?2 for aboveground residue, and 301.3 g C m^?2 for all aboveground organs.     

Steric sea level changes estimated from historical ocean subsurface temperature and salinity analyses

An historical objective analysis of subsurface temperature and salinity was carried out on a monthly basis from 1945 to 2003 using the latest observational databases and a sea surface temperature analysis. In addition, steric sea level changes were mainly examined using outputs of the objective analyses. The objective analysis is a revised version of Ishii et al. and is available at 16 levels in the upper 700 m depth. Artificial errors in the previous analysis during the 1990s have been worked out in the present analysis. The steric sea level computed from the temperature analysis has been verified with tide gauge observations and TOPEX/Poseidon sea surface height data. A correction for crustal movement is applied for tide gauge data along the Japanese coast. The new analysis is suitable for the discussion of global warming. Validation against the tide gauge reveals that the amplitude of thermosteric sea level becomes larger and the agreement improves in comparison with the previous analysis. A substantial part of local sea level rise along the Japanese coast appears to be explained by the thermosteric effect. The thermal expansion averaged in all longitudes from 60°S to 60°N explains at most half of recent sea level rise detected by satellite observation during the last decade. Considerable uncertainties remain in steric sea level, particularly over the southern oceans. Temperature changes within MLD make no effective contribution to steric sea level changes along the Antarctic Circumpolar Current. According to statistics using only reliable profiles of the temperature and salinity analyses, salinity variations are intrinsically important to steric sea level changes in high latitudes and in the Atlantic Ocean. Although data sparseness is severe even in the latest decade, linear trends of global mean thermosteric and halosteric sea level for 1955 to 2003 are estimated to be 0.31 ± 0.07 mm/yr and 0.04 ± 0.01 mm/yr, respectively. These estimates are comparable to those of the former studies.     

Phototropic adjustment of the foliaceous coral Echinopora lamellosa in Palau

We tested the hypothesis that foliose plates of Echinopora lamellosa (Esper, 1795) adjust their primary growth direction (or slope from the horizontal) when irradiance (light) is limiting. This hypothesis was tested at a coral-reef locality that is shaded daily by steep adjacent hills, restricting direct light to only a few hours each day (Iwayama Bay, Palau). The angle at which colonies received maximum light was measured using acetate film, and was compared with modeled estimates (using a simple global-light model). We show strong relationships between light and primary-colony gradients; with the foliose plates acting as parabolic antennae, predictably adjusting their primary gradients to optimize light capture.     

Food sources of the pearl oyster in coastal ecosystems of Japan: Evidence from diet and stable isotope analysis

We estimated the composition of two food sources for the cultured pearl oyster Pinctada fucata martensii using stable isotopes and stomach content analysis in the coastal areas of the Uwa Sea, Japan. The δ¹³C values of oysters (−17.5 to −16.8‰) were intermediate between that of particulate organic matter (POM, −20.2 to −19.1‰) and attached microalgae on pearl cages (−13.0‰). An isotope mixing model suggested that oysters were consuming 78% POM (mainly phytoplankton) and 22% attached microalgae. The attached microalgal composition of the stomach content showed a strong resemblance to the composition of that estimated through the isotope mixing model, suggesting preferential utilization of specific components is unlikely in this species. These results indicate that P. fucata martensii feed on a mixture of phytoplankton and attached microalgae, and that the attached microalgae on pearl cages can serve as an important additional food source.     

Iron, manganese and aluminum in upper waters of the western South Pacific Ocean and its adjacent seas

Total dissolvable iron, manganese and aluminum distributions in upper waters were determined in the western South Pacific, Solomon Sea, Coral Sea, and Tasman Sea. In these oceanic regions, the surface aluminum distributions well reflect the atmospheric deposition pattern of mineral dust in the western South Pacific reported previously. Surface manganese distributions derive mainly from lateral transportation from the coastal sediments of western tropical islands. Compared to Mn and Al, the Fe distributions reflect the nutrient cycle in upper waters. Iron limitation over the vast South Pacific, as revealed by physiological features of phytoplankton, seems to be caused by low atmospheric dust deposition and low Fe:N ratios in deep waters. In the western South Pacific, with its unique geographic and oceanographic settings, the local sources of trace metals might considerably affect their biogeochemical cycles.     

Wind- and density-driven circulation in a bay on the Sanriku ria coast,Japan: study of Shizugawa Bay facing the Pacific Ocean

Flow fields in Shizugawa Bay on the Sanriku ria coast, which faces the Pacific Ocean, were investigated using hydrographic observations for the purpose of understanding oceanographic conditions and the process of water exchanges in the bay after the 2011 earthquake off the Pacific coast of Tohoku. In spring to summer, density-driven surface outflow is part of estuarine circulation and is induced by a pressure gradient force under larger longitudinal gradients in density along with lower salinity water in the innermost part of the bay, regardless of wind forcing. In winter to summer, another density-driven current with a thermal structure is induced by a pressure gradient force under the smaller longitudinal density gradients in calm wind conditions. Particularly in winter, Tsugaru Warm Current water can be transported in the surface layer inside the bay. Wind-driven bay-scale circulation with downwind and upwind currents in the surface and deeper layers, respectively, is induced by strong longitudinal wind forcing under the smaller longitudinal density gradients, irrespective of season. Particularly in fall to spring, this circulation can cause the intrusions of oceanic water associated with Oyashio water and Tsugaru Warm Current water in the deeper layer. These results suggest that wind- and density-driven currents can produce the active exchange of water from inside and outside the bay throughout the year.     

Complex vertical migration of larvae of the ghost shrimp, Nihonotrypaea harmandi, in inner shelf waters of western Kyushu,Japan

The position of meroplanktonic larvae in the water column with depth-dependent current velocities determines horizontal transport trajectories. For those larvae occurring in inner shelf waters, little is known about how combined diel and tidally-synchronized vertical migration patterns shift ontogenetically. The vertical migration of larvae of Nihonotrypaea harmandi (Decapoda: Thalassinidea: Callianassidae) was investigated in mesotidal, inner shelf waters of western Kyushu, Japan in July–August 2006. The larval sampling at seven depth layers down to 60 m was conducted every 3 h for 36 h in a 68.5-m deep area 10 km off a major coastal adult habitat. Within a 61–65-m deep area 5–7.5 km off the adult habitat, water temperature, salinity, chlorophyll a concentration, and photon flux density were measured, and water currents there were characterized from harmonic analysis of current meter data collected in 2008. The water column was stratified, with pycnocline, chlorophyll a concentration maximum, and 2% of photon flux density at 2 m, recorded at around 22–24 m. The stratified residual currents were detected in their north component, directed offshore and onshore in the upper and lower mixed layers, respectively. More than 87% of larvae occurred between 20 m and 60 m, producing a net onshore transport of approximately 1.3 km d⁻¹. At the sunset flooding tide, all zoeal-stage larvae ascended, which could further promote retention (1.4-km potential onshore transport in 3 h). The actual onshore transport of larvae was detected by observing their occurrence pattern in a shallow embayment area with the adult habitat for 24 h in October 1994. However, ontogenetic differences in the vertical migration pattern in inner shelf waters were also apparent, with the maximum mean positions of zoeae deepening with increasing stages. Zoeae I and II performed a reverse diel migration, with their minimum and maximum depths being reached around noon and midnight, respectively. Zoeae IV and V descended continuously. Zoeae III had behaviors that were intermediate to those of the earlier- and later-stage zoeae. Postlarvae underwent a normal diel migration (nocturnal ascent) regardless of tides, with the deepest position (below 60 m and/or on the bottom) during the day. These findings give a new perspective towards how complex vertical migration patterns in meroplanktonic larvae enable their retention in inner shelf waters before the final entry of postlarvae into their natal populations.     

Iron deficiency in micro-sized diatoms in the Oyashio region of the Western subarctic Pacific during spring

In order to detect iron (Fe) stress in micro-sized (20–200 μm) diatoms in the Oyashio region, western subarctic Pacific during spring, immunological ferredoxin/flavodoxin assays were applied to samples collected from the surface layer in May 2005. Concomitantly, the community composition of the micro-sized phytoplankton and hydrographic conditions, including dissolved Fe and macronutrient concentrations, were also examined. Chlorophyll (Chl) a concentrations were <2 mg m⁻³ at all sampling stations, except at a station where the Chl a level was 9.0 mg m⁻³ and a micro-sized diatom bloom occurred. A high abundance of ferredoxin in micro-sized diatoms was detected only at a rather near-shore station where dissolved Fe and macronutrient concentrations were higher, indicating that the micro-sized diatoms did not suffer from iron deficiency. On the other hand, flavodoxin in micro-sized diatoms was often observed at the other stations, including the bloom station, where macronutrients were replete but dissolved Fe concentration was low (0.31 nM). A significant amount of chlorophyllide a, a degradation product of Chl a, was also observed at the bloom station, suggesting a decline of the diatom bloom. The micro-sized phytoplankton species at all the stations were mainly composed of the diatoms Thalassiosira, Chaetoceros, and Fragilariopsis spp. Our study indicates that micro-sized diatoms were stressed by Fe bioavailability during the spring season in the Oyashio region     

Seasonal variation of the ITCZ and its characteristics over central Africa

We investigated the seasonal march of the Intertropical Convergence Zone (ITCZ) shown by the 22 coupled general circulation models of the 20th Century Climate in Coupled Models experiment in seven regions (Africa, Indian Ocean, western Pacific, central Pacific, eastern Pacific, South America, and Atlantic Ocean). Inter-model differences in the seasonal march of the ITCZ over Africa (10?C40°E) were significantly smaller than those over other regions. This finding indicates that the seasonal march of the ITCZ over Africa is insensitive to differences in model physics and resolution and suggests that the seasonal march of the African ITCZ is controlled by robust and simple mechanisms. Motivated by this result, we tried to understand the process of the seasonal march of the ITCZ over central Africa (15?C30°E) based on an analysis of ERA-40 data. The analysis results revealed the following features of the ITCZ in this region: (1) The ITCZ itself produces large convective available potential energy that generates deep convection. (2) The abundant water vapor within the ITCZ is maintained by horizontal moisture flux. (3) Outside but near the ITCZ, shallow convection exists and may act to pre-moisten deep convection in spring and autumn. (4) The seasonal change of the ITCZ is preceded by that of the vertical moist instability in the lower free atmosphere caused by the seasonal change in insolation.