The geology of Australian Mars analogue sites

Australia has numerous landforms and features, some unique, that provide a useful reference for interpreting the results of spacecraft orbiting Mars and exploring the martian surface. Examples of desert landforms, impact structures, relief inversion, long-term landscape evolution and hydrothermal systems that are relevant to Mars are outlined and the relevant literature reviewed. The Mars analogue value of Australia's acid lakes, hypersaline embayments and mound spring complexes is highlighted along with the Pilbara region, where the oldest convincing evidence of life guides exploration for early life on Mars. The distinctive characteristics of the Arkaroola Mars Analogue Region are also assessed and opportunities for future work in Australia are outlined.     

Electrochemical detection of harmful algae and other microbial contaminants in coastal waters using hand-held biosensors

Standard methods to identify microbial contaminants in the environment are slow, laborious, and can require specialized expertise. This study investigated electrochemical detection of microbial contaminants using commercially available, hand-held instruments. Electrochemical assays were developed for a red tide dinoflagellate (Karenia brevis), fecal-indicating bacteria (Enterococcus spp.), markers indicative of human sources of fecal pollution (human cluster Bacteroides and the esp gene of Enterococcus faecium), bacterial pathogens (Escherichia coli 0157:H7, Salmonella spp., Campylobacter jejuni, Staphylococcus aureus), and a viral pathogen (adenovirus). For K. brevis, two assay formats (Rapid PCR-Detect and Hybrid PCR-Detect) were tested and both provided detection limits of 10 genome equivalents for DNA isolated from K. brevis culture and amplified by PCR. Sensitivity with coastal water samples was sufficient to detect K. brevis that was "present" (相似文献   

High- and low-affinity binding sites for Cd on the bacterial cell walls of Bacillus subtilis and Shewanella oneidensis

Bulk Cd adsorption isotherm experiments, thermodynamic equilibrium modeling, and Cd K edge EXAFS were used to constrain the mechanisms of proton and Cd adsorption to bacterial cells of the commonly occurring Gram-positive and Gram-negative bacteria, Bacillus subtilis and Shewanella oneidensis, respectively. Potentiometric titrations were used to characterize the functional group reactivity of the S. oneidensis cells, and we model the titration data using the same type of non-electrostatic surface complexation approach as was applied to titrations of B. subtilis suspensions by Fein et al. (2005). Similar to the results for B. subtilis, the S. oneidensis cells exhibit buffering behavior from approximately pH 3-9 that requires the presence of four distinct sites, with pK_a values of 3.3 ± 0.2, 4.8 ± 0.2, 6.7 ± 0.4, and 9.4 ± 0.5, and site concentrations of 8.9(±2.6) × 10⁻⁵, 1.3(±0.2) × 10⁻⁴, 5.9(±3.3) × 10⁻⁵, and 1.1(±0.6) × 10⁻⁴ moles/g bacteria (wet mass), respectively. The bulk Cd isotherm adsorption data for both species, conducted at pH 5.9 as a function of Cd concentration at a fixed biomass concentration, were best modeled by reactions with a Cd:site stoichiometry of 1:1. EXAFS data were collected for both bacterial species as a function of Cd concentration at pH 5.9 and 10 g/L bacteria. The EXAFS results show that the same types of binding sites are responsible for Cd sorption to both bacterial species at all Cd loadings tested (1-200 ppm). Carboxyl sites are responsible for the binding at intermediate Cd loadings. Phosphoryl ligands are more important than carboxyl ligands for Cd binding at high Cd loadings. For the lowest Cd loadings studied here, a sulfhydryl site was found to dominate the bound Cd budgets for both species, in addition to the carboxyl and phosphoryl sites that dominate the higher loadings. The EXAFS results suggest that both Gram-positive and Gram-negative bacterial cell walls have a low concentration of very high-affinity sulfhydryl sites which become masked by the more abundant carboxyl and phosphoryl sites at higher metal:bacteria ratios. This study demonstrates that metal loading plays a vital role in determining the important metal-binding reactions that occur on bacterial cell walls, and that high affinity, low-density sites can be revealed by spectroscopy of biomass samples. Such sites may control the fate and transport of metals in realistic geologic settings, where metal concentrations are low.     

Recent Developments in the Analysis of the Black Mat Layer and Cosmic Impact at 12.8 ka

Recent analyses of sediment samples from “black mat” sites in South America and Europe support previous interpretations of an ET impact event that reversed the Late Glacial demise of LGM ice during the Bølling Allerød warming, resulting in a resurgence of ice termed the Younger Dryas (YD) cooling episode. The breakup or impact of a cosmic vehicle at the YD boundary coincides with the onset of a 1‐kyr long interval of glacial resurgence, one of the most studied events of the Late Pleistocene. New analytical databases reveal a corpus of data indicating that the cosmic impact was a real event, most possibly a cosmic airburst from Earth's encounter with the Taurid Complex comet or unknown asteroid, an event that led to cosmic fragments exploding interhemispherically over widely dispersed areas, including the northern Andes of Venezuela and the Alps on the Italian/French frontier. While the databases in the two areas differ somewhat, the overall interpretation is that microtextural evidence in weathering rinds and in sands of associated paleosols and glaciofluvial deposits carry undeniable attributes of melted glassy carbon and Fe spherules, planar deformation features, shock‐melted and contorted quartz, occasional transition and platinum metals, and brecciated and impacted minerals of diverse lithologies. In concert with other black mat localities in the Western USA, the Netherlands, coastal France, Syria, Central Asia, Peru, Argentina and Mexico, it appears that a widespread cosmic impact by an asteroid or comet is responsible for deposition of the black mat at the onset of the YD glacial event. Whether or not the impact caused a 1‐kyr interval of glacial climate depends upon whether or not the Earth had multiple centuries‐long episodic encounters with the Taurid Complex or asteroid remnants; impact‐related changes in microclimates sustained climatic forcing sufficient to maintain positive mass balances in the reformed ice; and/or inertia in the Atlantic thermohaline circulation system persisted for 1 kyr.     

Utilization of a multicriteria least cost path model in an aquatic environment

A critical component of maintaining biodiversity in fragmented habitats is maintaining connectivity among the usable fragments. Least cost path (LCP) analysis is a tool that can be used for predicting the ability of an organism to move from one habitat patch to another, based on geographical features of the landscape and life history traits of the organism. While this analysis has been utilized for terrestrial habitats, it is rarely applied to aquatic environments. Aquatic hypoxic conditions occur when dissolved oxygen falls below 2 mg/L. These conditions can create barriers in the water column that can either force fish to leave a habitat, or avoid that habitat altogether. Using the lower St. Johns River (LSJR) estuary in Florida, USA, as a study system, the ability of an adult silver perch, Bairdiella chrysoura, to escape a large-scale hypoxic event was modeled using a multicriteria LCP approach. Criteria-specific cost grids were constructed based upon current speed, risk of predation, and whether oxygen levels in the habitat area were normoxic (>5.5 mg/L), or hypoxic (<2.0–1.5 mg/L) as a function of water depth for the LSJR. The criteria cost grids were combined using relative weighting to produce the multicriteria cost grid used to implement the LCP analysis. Three origin and destination point locations within the LSJR study area were selected for modeling whether or not a silver perch would be able to escape a hypoxic zone. Since the LCP model will always determine a LCP from the specified origin point location, ecologically relevant swimming capacities for silver perch under normoxic and hypoxic conditions were then applied to assess the model, and to determine whether the fish would be able to reach areas unimpacted by hypoxia. The LCP model and the swimming capacity results for this study predict that under normoxic conditions, fish movement was unimpeded. During the rapidly developing hypoxic event that was modeled, the results from the LCP model indicate that the fish could move outside the hypoxic zone, but when swimming capacities were applied to the model, the silver perch could not escape. Ecologically, the results of this study suggest that silver perch would experience high mortality under a rapidly developing hypoxic event. Additionally, the results of this study indicate that a LCP model can be applied to an aquatic habitat, as long as the cost grids incorporate relevant abiotic and biotic factors.     

Training Images from Process-Imitating Methods

The lack of a suitable training image is one of the main limitations of the application of multiple-point statistics (MPS) for the characterization of heterogeneity in real case studies. Process-imitating facies modeling techniques can potentially provide training images. However, the parameterization of these process-imitating techniques is not straightforward. Moreover, reproducing the resulting heterogeneous patterns with standard MPS can be challenging. Here the statistical properties of the paleoclimatic data set are used to select the best parameter sets for the process-imitating methods. The data set is composed of 278 lithological logs drilled in the lower Namoi catchment, New South Wales, Australia. A good understanding of the hydrogeological connectivity of this aquifer is needed to tackle groundwater management issues. The spatial variability of the facies within the lithological logs and calculated models is measured using fractal dimension, transition probability, and vertical facies proportion. To accommodate the vertical proportions trend of the data set, four different training images are simulated. The grain size is simulated alongside the lithological codes and used as an auxiliary variable in the direct sampling implementation of MPS. In this way, one can obtain conditional MPS simulations that preserve the quality and the realism of the training images simulated with the process-imitating method. The main outcome of this study is the possibility of obtaining MPS simulations that respect the statistical properties observed in the real data set and honor the observed conditioning data, while preserving the complex heterogeneity generated by the process-imitating method. In addition, it is demonstrated that an equilibrium of good fit among all the statistical properties of the data set should be considered when selecting a suitable set of parameters for the process-imitating simulations.     

Qualitative risk assessment of multiple-use marine park effectiveness – A case study from NSW,Australia

Effectiveness of the managed-use zones in six multiple-use marine parks located within New South Wales (NSW), Australia, was assessed using qualitative Ecological Risk Assessment (ERA) techniques. Permitted activities in these managed-use zones displayed considerable variation between individual marine parks within this one jurisdiction (NSW); many activities appeared to be inconsistent with the stated objectives; and, some were considered high risk. For example, in “habitat protection” zones, 24 out of 76 permitted activities were inconsistently applied across the parks and 10 activities were determined to be high risk. ERA indicated that many commercial fishing activities warranted restriction or prohibition in these zones, including trawling, set lining, drift lining, mesh netting and purse seining operations. The best fit between objectives of the managed-use zones and permitted activities was for the most recent park (Batemans Marine Park). Inconsistencies in application of zoning restrictions between these marine parks could lead to stakeholder confusion, unintentional non-compliance and failure to adequately protect the assets. As a result, it is suggested that these managed-use zones may not be achieving their stated objectives and that greater consistency in application of regulations was required. To implement the ERA recommendations, changes would be required across all of the NSW marine parks and this would be best accommodated during a staged review of all zoning plans. It is concluded that ERA is an effective tool to aid in systematically identifying permissible activities in order to meet marine park objectives.     

What is a flux tube? On the magnetic field topology of buoyant flux structures

We study the topology of field lines threading buoyant magnetic flux structures. The magnetic structures, visually resembling idealized magnetic flux tubes, are generated self-consistently by numerical simulation of the interaction of magnetic buoyancy and a localized velocity shear in a stably stratified atmosphere. Depending on the parameters, the system exhibits varying degrees of symmetry. By integrating along magnetic field lines and constructing return maps, we show that, depending on the type of underlying behaviour, the stages of the evolution, and therefore the degree of symmetry, the resulting magnetic structures can have field lines with one of three distinct topologies. When the x -translational and y -reflectional symmetries remain intact, magnetic field lines lie on surfaces but individual lines do not cover the surface. When the y symmetry is broken, magnetic field lines lie on surfaces and individual lines do cover the surface. When both x and y symmetries are broken, magnetic field lines wander chaotically over a large volume of the magnetically active region. We discuss how these results impact our simple ideas of a magnetic flux tube as an object with an inside and an outside, and introduce the concept of 'leaky' tubes.     

Variable Grid Method: An Intuitive Approach for Simultaneously Quantifying and Visualizing Spatial Data and Uncertainty

Efforts to develop applications and methods that effectively quantify and communicate uncertainty associated with spatial data remains a focus within many scientific communities. However, the inherent complexity of uncertainty makes it difficult to define, characterize, and represent. Frequently, the products of spatial and spatio‐temporal data are presented without a clear explanation of the inherent uncertainty underlying the data. As uses and applications for spatial data and their products continues to increase, so does the importance for utilizing reliable approaches to effectively communicate spatial data along with their inherent uncertainties. To address this need, the Variable Grid Method (VGM) was developed as an intuitive approach that simultaneously communicates both spatial patterns and trends and the uncertainty associated with data or their analyses. This article details the VGM approach and demonstrates the utility of the VGM to provide critical information about the relationship between uncertainty and spatial data, necessary to support the increasing utilization of spatial information for a wide range of research and other needs.