Cycling the representer algorithm for variational data assimilation with a nonlinear reduced gravity ocean model

The representer method was used by [Ngodock, H.E., Jacobs, G.A., Chen, M., 2006. The representer method, the ensemble Kalman filter and the ensemble Kalman smoother: a comparison study using a nonlinear reduced gravity ocean model. Ocean Modelling 12, 378–400] in a comparison study with the ensemble Kalman filter and smoother involving a 1.5 nonlinear reduced gravity idealized ocean model simulating the Loop Current (LC) and the Loop Current eddies (LCE) in the Gulf of Mexico. It was reported that the representer method was more accurate than its ensemble counterparts, yet it had difficulties fitting the data in the last month of the 4-month assimilation window when the data density was significantly decreased. The authors attributed this failure to increased advective nonlinearities in the presence of an eddy shedding causing the tangent linear model (TLM) to become inaccurate. In a separate study [Ngodock, H.E., Smith, S.R., Jacobs, G.A., 2007. Cycling the representer algorithm for variational data assimilation with the Lorenz attractor. Monthly Weather Review 135 (2), 373–386] applied the cycling representer algorithm to the Lorenz attractor and demonstrated that the cycling solution was able to accurately fit the data within each cycle and beyond the range of accuracy of the TLM, once adjustments were made in the early cycles, thus overcoming the difficulties of the non-cycling solution. The cycling algorithm is used here in assimilation experiments with the nonlinear reduced gravity model. It is shown that the cycling solution overcomes the difficulties encountered by the non-cycling solution due to a limited time range of accuracy of the TLM. Thus, for variational assimilation applications where the TLM accuracy is limited in time, the cycling representer becomes a very powerful and attractive alternative, given that its computational cost is significantly lower than that of the non-cycling algorithm.     

The contribution of nano- and micro-planktonic assemblages in the surface layer (0-30 m) under different hydrographic conditions in the upwelling area off Concepción, central Chile

In the highly productive region off central Chile, the structure and temporal and spatial variability of planktonic assemblages, and the factors that determine changes in this structure are poorly understood. In the region, wind-driven upwelling, heating by solar radiation and freshwater inputs are highly seasonal processes, which, together with higher frequency events, can promote changes in the planktonic communities, especially in the upper layer. This study focuses on the structure of nano- through to micro-planktonic assemblages (2-200 μm) of unicellular organisms (protists) in surface waters (0-30 m) during different hydrographic conditions. Samples were taken from a fixed shelf station off Concepción (COPAS time series Station 18) on eight occasions between September 2003 and August 2004. The nano-plankton flagellate-dominated fraction was numerically important during the whole period. Maxima in flagellate abundance and biomass occurred during the upwelling period (November-April samplings) but these maxima appear to be unrelated to the degree of water column stratification. The micro-plankton diatom-dominated fraction was usually the largest component in terms of biomass during the study period and the diatoms made important numerical contributions during the upwelling period, with maxima in abundance and biomass when water column stability was lowest. The dominant genera and morphotypes in each functional group were found throughout the study period, with maxima in abundance and biomass co-occurring under similar environmental upwelling conditions. The mean macro-nutrient concentrations (nitrate and silicate) were relatively high in the top 30 m during both upwelling and non-upwelling periods, and did not explain the maxima in plankton or functional group replacements. The persistence of the dominant taxa in the planktonic assemblages suggests a high degree of flexibility, though probably not at the specific level, to withstand the highly variable environmental conditions in this upwelling area.     

Spectrophotometric determination of pH in seawater off Taiaroa Head,Otago, New Zealand: Full-spectrum modelling and prediction of pCO2 levels

Accurate measurement of seawater pH has long been sought by marine chemists (for example: [Dickson, A.G. 1993a. The measurement of sea water pH. Marine Chemistry, 44, 131–142, Dickson, A.G. 1993b. pH buffers for sea water media based on the total hydrogen ion concentration scale. Deep-Sea Research, 40, 107–118; Zhang, 1996; Tapp, M., Hunter, K.A., Currie, K. and Macaskill, B. 2000. Apparatus of continuous-flow underway spectrophotometric measurement of surface water pH. Marine Chemistry 72(2–4), 193–202; Friis, K., Koetzinger, A., Wallace, D.W.R. 2004. Spectrophotometric pH measurement in the ocean: Requirements, design and testing of an autonomous charge-coupled device detector system. Limnology and Oceanography: Methods 2, 126–136]. Recently, such attempts have taken on greater significance as anthropogenic carbon dioxide emissions may create rapidly changing oceanic pH. Spectrophotometric techniques have been accepted generally as the best for determination of seawater pH. Here we report a new technique using thymol blue as the indicator dye and fitting the entire spectrum from 400 to 900 nm rather than measuring the absorbance values at only two or three points in the spectrum. This full-spectrum modelling enables a reduction in signal to noise over other techniques. In the laboratory, we find with seawater samples a pH precision increase of five-fold “within” a sample and seven-fold “between” samples when comparing the full spectrum to the three-point method of analysis [Zhang, H., Byrne, R.H. 1996. Spectrophotometric pH measurements of surface seawater at in-situ conditions: absorbance and protonation behaviour of thymol blue. Marine Chemistry 52, 17–25].     

Assessment of a Sr isotope vital effect (87Sr/86Sr) in marine taxa from Lee Stocking Island, Bahamas

 Data from Lee Stocking Island, Bahamas, confirms the hypothesis that there are no vital effects with the uptake of Sr isotopes (⁸⁷Sr/⁸⁶Sr) at the present mass spectrometer resolution [±2×10^-5 (2σ)]. Our data set contains analyses of 40 samples derived from 37 different calcareous taxa inhabiting a wide range of carbonate subenvironments (i.e., reefal, intertidal, supratidal, mangrove). The mean value of our analyses was 0.709179 with a standard deviation of 2.4×10^-5 (2σ) which was very close to the long-term uncertainty of the strontium isotope methodology [±2.0×10^-5 (2σ)] and to the widely reported ⁸⁷Sr/⁸⁶Sr value of seawater, which clusters around 0.709175. Received: 14 October 1997 / Revision received: 20 March 1998     

Induction of heat shock protein (hsp)60 in Isochrysis galbana exposed to sublethal preparations of dispersant and Prudhoe Bay crude oil

Adaptation to sublethal exposure to crude oil by phytoplankton is poorly understood. Use of chemical dispersants for oil spill remediation increases petroleum hydrocarbon concentrations in water, while exposing marine organisms to potentially toxic concentrations of dispersant. Heat shock proteins (hsps) have been found to serve as an adaptive and protective mechanism against environmental stresses. The objective of this project was to examine the induction of hsps in Isochrysis galbana, a golden-brown algae, following exposure to the water-accommodated fraction (WAF) of Prudhoe Bay crude oil (PBCO) and PBCO chemically dispersed with Corexit 9527® (dispersed oil: DO). Initial experiments using ³⁵S-labeled amino acids and 2-dimensional electrophoresis with subsequent western blotting identified and confirmed hsp60, a member of the chaperonin family of stress proteins, as being efficiently induced by heat shock in this species. One-dimensional SDS PAGE and western blotting, with hsp60 antibodies and chemiluminesence detection, were used to quantitate hsp60 following exposure to a range of environmental temperatures and concentrations of WAF and DO preparations. I. galbana cultured in 22 parts per thousand (‰) salinity showed a statistically significant increase (p<0.05) in hsp60 after exposure to 25, 30, and 35°C for 1 h compared to controls (20°C), while 34‰ cultures showed no significant increase in hsp60 with increasing temperature. Cultures (22 and 34‰) exposed to varying doses of WAF and DO exhibited statistically significant (p<0.05) increases in levels of hsp60 in all cases. A dose-related response was observed in all exposures (r²≥0.90) with the exception of 34‰ WAF. In independent exposures, a dose-related hsp60 response to naphthalene, a relatively abundant water-soluble aromatic hydrocarbon, was observed in both 22 and 34‰ cultures. Results of this study are consistent with previous studies in other species documenting increases in hsp60 levels with exposure to xenobiotics. Further studies are investigating the protective function of hsp60 against the toxic effects of exposure to WAF and DO preparations.     

The Effect of Macrofauna on Porewater Profiles and Nutrient Fluxes in the Intertidal Zone of the Humber Estuary

Macrofauna, nutrient fluxes, porewater chemistry and sediment characteristics were measured at six intertidal mudflat sites in the Humber Estuary, U.K., during the different seasons. Nereis diversicolor , Macoma balthica and Corophium volutator were found to be the dominant macrofauna. Salinity was the baseline control on macrofauna distribution but this was overprinted by periodic impoverishment due to sediment mobilization. High resolution gel probe porewater samplers provided direct evidence for the impact of burrows on porewater chemistry. The macrofauna modified nutrient fluxes during periods of mud flat stability. Nereis caused a decrease in silicate and phosphate effluxes but enhanced ammonia release and nitrate uptake. Macoma enhanced ammonia and nitrite release. The impact of Corophium was not possible to discern. The Humber is a large, highly dynamic macrotidal estuary in which sediment resuspension has a large impact on porewater profiles, nutrient fluxes and macrofaunal communities. Simple patterns and inter-relationships which are seen in small sheltered estuaries are not observed in the Humber.     

Evaluation of the Variability of the Shoreline of the Tsimlyansk Reservoir and Lake Ilmen according to Space Sounding Data

Izvestiya, Atmospheric and Oceanic Physics - This article presents the results of a study of the dynamics of the shorelines of Lake Ilmen and the Tsimlyansk Reservoir to indicate the location of...