An upgraded version of the Eta model

Upgrades implemented over a number of years in an open source version of the Eta model, posted at the CPTEC web site http://etamodel.cptec.inpe.br/, are summarized and examples of benefits are shown. The version originates from the NCEP’s Workstation Eta code posted on the NCEP web site http://www.emc.ncep.noaa.gov/mmb/wrkstn_eta, which differs from the NCEP’s latest operational Eta by having the WRF-NMM nonhydrostatic option included. Most of the upgrades made resulted from attention paid to less than satisfactory performance noted in several Eta results, and identification of the reasons for the problem. Others came from simple expectation that including a feature that is physically justified but is missing in the code should help. The most notable of the upgrades are the introduction of the so-called sloping steps, or discretized shaved cells topography; piecewise-linear finite-volume vertical advection of dynamic variables; vapor and hydrometeor loading in the hydrostatic equation, and changes aimed at refining the convection schemes available in the Eta. Several other modifications have to do with the calculation of exchange coefficients, conservation in the vertical diffusion, and diagnostic calculation of 10-m winds. Several examples showing improved performance resulting from the dynamics changes are given. One includes a case of unrealistically low temperatures in several mountain basins generated by a centered vertical advection difference scheme’s unphysical advection from below ground, removed by its replacement with a finite-volume scheme. Another is that of increased katabatic winds in the Terra Nova Bay Antarctica region. Successful forecast of the severe downslope zonda wind case in the lee of the highest peaks of the Andes is also shown, and some of the recent successful verification results of the use of the upgraded model are pointed out. The code is used at numerous places, and along with setup information it is available for outside users at the CPTEC Eta web site given above.     

A Criterion for Brittle Failure of Rocks Using the Theory of Critical Distances

This paper presents a new analytical criterion for brittle failure of rocks and heavily over-consolidated soils. Griffith’s model of a randomly oriented defect under a biaxial stress state is used to keep the criterion simple. The Griffith’s criterion is improved because the maximum tensile strength is not evaluated at the boundary of the defect but at a certain distance from the boundary, known as half of the critical distance. This fracture criterion is known as the point method, and is part of the theory of critical distances, which is utilised in fracture mechanics. The proposed failure criterion has two parameters: the inherent tensile strength, σ ₀, and the ratio of the half-length of the initial crack/flaw to the critical distance, a/L. These parameters are difficult to measure but they may be correlated with the uniaxial compressive and tensile strengths, σ _c and σ _t. The proposed criterion is able to reproduce the common range of strength ratios for rocks and heavily overconsolidated soils (σ _c/σ _t = 3–50) and the influence of several microstructural rock properties, such as texture and porosity. Good agreement with laboratory tests reported in the literature is found for tensile and low-confining stresses.     

New classes of spectral densities for lattice processes and random fields built from simple univariate margins

Quasi arithmetic and Archimedean functionals are used to build new classes of spectral densities for processes defined on any d-dimensional lattice \mathbbZ^d{\mathbb{Z}^d} and random fields defined on the d-dimensional Euclidean space \mathbbR^d{\mathbb{R}^d}, given simple margins. We discuss the mathematical features of the proposed constructions, and show rigorously as well as through examples, that these new classes of spectra generalize celebrated classes introduced in the literature. Additionally, we obtain permissible spectral densities as linear combinations of quasi arithmetic or Archimedean functionals, whose associated correlation functions may attain negative values or oscillate between positive and negative ones. We finally show that these new classes of spectral densities can be used for nonseparable processes that are not necessarily diagonally symmetric.     

Estuarine ecological risk based on hepatic histopathological indices from laboratory and in situ tested fish

Juvenile Senegalese soles were exposed through 28-day laboratory and field (in situ) bioassays to sediments from three sites of the Sado estuary (W Portugal): a reference and two contaminated by metallic and organic contaminants. Fish were surveyed for ten hepatic histopathological alterations divided by four distinct reaction patterns and integrated through the estimation of individual histopathological condition indices. Fish exposed to contaminated sediments sustained more damage, with especial respect to regressive changes like necrosis. However, differences were observed between laboratory- and field-exposed animals, with the latest, for instance, exhibiting more pronounced fatty degeneration and hepatocellular eosinophilic alteration. Also, some lesions in fish exposed to the reference sediment indicate that in both assays unaccounted variables produced experimental background noise, such as hyaline degeneration in laboratory-exposed fish. Still, the field assays yielded results that were found to better reflect the overall levels of contaminants and physico-chemical characteristics of the tested sediments.     

On the use of IPCC-class models to assess the impact of climate on Living Marine Resources

The study of climate impacts on Living Marine Resources (LMRs) has increased rapidly in recent years with the availability of climate model simulations contributed to the assessment reports of the Intergovernmental Panel on Climate Change (IPCC). Collaboration between climate and LMR scientists and shared understanding of critical challenges for such applications are essential for developing robust projections of climate impacts on LMRs. This paper assesses present approaches for generating projections of climate impacts on LMRs using IPCC-class climate models, recommends practices that should be followed for these applications, and identifies priority developments that could improve current projections. Understanding of the climate system and its representation within climate models has progressed to a point where many climate model outputs can now be used effectively to make LMR projections. However, uncertainty in climate model projections (particularly biases and inter-model spread at regional to local scales), coarse climate model resolution, and the uncertainty and potential complexity of the mechanisms underlying the response of LMRs to climate limit the robustness and precision of LMR projections. A variety of techniques including the analysis of multi-model ensembles, bias corrections, and statistical and dynamical downscaling can ameliorate some limitations, though the assumptions underlying these approaches and the sensitivity of results to their application must be assessed for each application. Developments in LMR science that could improve current projections of climate impacts on LMRs include improved understanding of the multi-scale mechanisms that link climate and LMRs and better representations of these mechanisms within more holistic LMR models. These developments require a strong baseline of field and laboratory observations including long time series and measurements over the broad range of spatial and temporal scales over which LMRs and climate interact. Priority developments for IPCC-class climate models include improved model accuracy (particularly at regional and local scales), inter-annual to decadal-scale predictions, and the continued development of earth system models capable of simulating the evolution of both the physical climate system and biosphere. Efforts to address these issues should occur in parallel and be informed by the continued application of existing climate and LMR models.     

Seed germination of wild,in situ-managed,and cultivated populations of columnar cacti in the Tehuacán-Cuicatlán Valley,Mexico

Seed germination was compared among wild, in situ-managed (wild plants let standing in areas cleared for agriculture), and cultivated populations of the columnar cacti Stenocereus pruinosus, Polaskia chichipe, Myrtillocactus schenckii, and Polaskia chende, species representing a gradient from higher to lower management intensity, respectively. We hypothesized that seeds from cultivated populations have higher water requirements to germinate than seeds of other populations, and that such difference is stronger in species more intensely managed. Germination was evaluated under water potential treatments at 0.0, ?0.2, and ?0.4 MPa. Interspecific differences were identified; germination rates markedly decreased in S. pruinosus and P. chichipe as water potential reduced. M. schenckii seeds germinated better at ?0.2 MPa, and seeds of P. chende in all treatments. Seed germination of wild and cultivated populations was similar in all cases and, therefore, at the population level domestication does not appear to have influenced variations in germination of the studied cacti species. However, experiments to test whether germination of seeds from plants with clear signs of domestication differs with seeds from other plants and their differential germination and seedling survival in wild, in situ-managed and cultivated environments could help to precise the influence of domestication on these plants.     

Meadow fragmentation and reproductive output of the SE Asian seagrass Enhalus acoroides

Flower and fruit production of the abundant, tall, long-lived, dioecious, surface-pollinating seagrass species Enhalus acoroides (L.) Royle were estimated at seven sites in the reef flats off Bolinao (NW Luzon, The Philippines) featuring different fragmentation of the seagrass meadows. Fragmentation of the seagrass meadow was quantified as cover of E. acoroides and all seagrass species present in 20×20 m plots. E. acoroides and overall seagrass cover were correlated positively. The proportion of female flowers of E. acoroides that developed a fruit increased sharply as overall seagrass cover was around 50%. Apparent sex ratio bore no relationship with overall seagrass cover. This threshold-type of relationship suggests that fragmentation of seagrass meadows can have a major effect on the reproductive output of this species. A possible mechanism underlying these results would be a non-linear increase of the efficiency of trapping the surface-dispersed pollen with increasing seagrass canopy density. This provides the first evidence based on real data that fragmentation can affect the population dynamics of seagrass species.     

Geological Facies Recovery Based on Weighted $$\ell _1$$ ℓ 1 -Regularization

Mathematical Geosciences - A weighted compressed sensing (WCS) algorithm is proposed for the problem of channelized facies reconstruction from pixel-based measurements. This strategy integrates...     

Appraising stone column settlement prediction methods using finite element analyses

Numerous approaches exist for the prediction of the settlement improvement offered by the vibro-replacement technique in weak or marginal soil deposits. The majority of the settlement prediction methods are based on the unit cell assumption, with a small number based on plane strain or homogenisation techniques. In this paper, a comprehensive review and assessment of the more popular settlement prediction methods is carried out with a view to establishing which method(s) is/are in best agreement with finite element predictions from a series of PLAXIS 2D axisymmetric analyses on an end-bearing column. The Hardening Soil Model in PLAXIS 2D has been used to model the behaviour of both the granular column material and the treated soft clay soil. This study has shown that purely elastic settlement prediction methods overestimate the settlement improvement for large modular ratios, while the methods based on elastic–plastic theory are in better agreement with finite element predictions at higher modular ratios. In addition, a parameter sensitivity study has been carried out to establish the influence of a range of different design parameters on predictions obtained using a selection of elastic–plastic methods.