Genetic variation of the small yellow croaker (Larimichthys polyactis) inferred from mitochondrial DNA provides novel insight into the fluctuation of resources

The small yellow croaker (Larimichthys polyactis) belongs to the family Sciaenidae, which is an offshore warm fish species and widely distributed in the western Pacific. In this study, the variation of genetic diversity and genetic differentiation among L. polyactis populations was analyzed by mitochondrial DNA control region. A total of 110 polymorphic sites were checked, which defined 134 haplotypes. High level of haplotype diversity (h=0.993±0.002) was detected in the examined range. Population genetic structure analyse (analysis of molecular variance, F_st) showed there were high gene flow among L. polyactis populations. The result showed that there were relatively high genetic diversity and low genetic differentiation among the Yellow Sea and the East China Sea populations, which can be attributed to diverse habitats, wide distribution range and high mutation rate of control region. Using phylogenetic methods, coalescent analyses (neutrality tests, mismatch distribution analysis, Bayesian skyline analyses) and molecular dating interpreted in conjunction with paleoclimatic and physiographic evidence, we inferred that the genetic make-up of extant populations of L. polyactis was shaped by Pleistocene environmental impacts on the historical demography of this species. Besides, relatively constant genetic diversity and larger effective population size were detected in recent L. polyactis population. The result showed that the fishing policy certainly, such as the summer closed fishing, played a role in protecting resources of L. polyactis. This study can offer a wealth of biological novelties which indicates genetic structure of L. polyactis population and provides the foundation for resources protection and policy setting.     

CMIP5模式对中国近海海表温度的模拟及预估

基于观测和再分析资料;利用多种指标和方法评估了国际耦合模式比较计划（CMIP5）中21个模式对中国近海海温的月、季节和年际变化模拟能力。多模式集合能够再现气候平均意义下近海海温的空间分布特征;但量值上存在一定的低估。在渤海和黄海;集合平均与观测差别比较明显。在年际尺度上;与观测数据对比;模式模拟海温与Niño3指数相关性较小。中国近海海表面温度在1960-2002年有明显的升高趋势;从2003年开始增温趋缓。评估结果表明;ACCESS1.0、BCC-CSM1.1、HadGEM2-ES、IPSL-CM5A-MR、CMCC-CM、FGOALS-g2、CNRM-CM5-2、INMCM4八个模式对中国近海海温的变化有较好的模拟能力。利用ACCESS1.0、INMCM4、BCC-CSM1.1、IPSL-CM5A-MR、CMCC-CM这5个模式结果对中国近海海温未来的变化进行了预估。在RCP4.5、RCP8.5情景下;未来近100年中国近海海温有明显升高趋势;最优模式多模式集合平均增温分别可达到1.5℃、3.3℃;净热通量变化和平流变化共同促进了东海升温。     

Sandbank occurrence on the Dutch continental shelf in the North Sea

Sandbanks, the largest of bed patterns in shallow sandy seas, pose a potential risk to shipping. They are also valuable elements of natural coastal protection, dissipating the energy of waves. In the Southern Bight of the North Sea, several sandbank areas have been reported in the literature. However, based on an objective crest–trough analysis of the bathymetry of the Dutch continental shelf, the present study shows that sandbanks are more widespread than commonly considered. These banks are relatively low, presumably explaining why they have not been documented before. This widespread occurrence of sandbanks in the North Sea is in agreement with theoretical predictions based on stability analysis techniques. The possible interference between large-scale human activity and low-amplitude open-shelf ridges implies that one should be careful not to overlook these patterns if none should appear in a preliminary (visual) assessment. The only part of the Southern Bight in which no ridges can be seen is a circular area with a diameter of about 50 km near the mouth of the river Rhine. Here, freshwater outflow affects the direction of tidal ellipses and residual flow, and suppresses the formation of open ridges.     

Late quaternary seismic stratigraphy and active faults of the Gulf of İzmit (NE Marmara Sea)

The Upper Quaternary seismic stratigraphy and active faults of the Gulf of İzmit were investigated by means of high-resolution shallow seismic profiling data in the source region of 1999 İzmit earthquake. High-resolution seismic reflection data correlated with borehole data indicate that the stratigraphy of İzmit Bay consists of three distinct depositional sequences formed in response to middle Pleistocene-Holocene sea-level changes. Reflector R, separating the pre-Holocene sequences (1 and 2) from the Holocene sequence (3), represents an erosional unconformity produced by the subaerial fluvial erosion of the continental shelves at the time of the last glacial maximum. Occasional, anomalous reflections (acoustic turbidity) observed within the Holocene sequence are interpreted as gas accumulations. The maximum thickness of the Holocene sediments is found to be about 25 m. The isopach map of Holocene sediment implies that the thickness of the Holocene decreases from the east towards the central and western basins of İzmit Bay. Two distinct fault systems are interpreted in İzmit Bay. The main fault system extending roughly in an E-W direction along the Gulf of İzmit is an active right lateral strike slip fault with a normal component. The secondary faults are normal faults striking in different directions and these are identified as being both active and inactive. In addition, prominent compressive features are identified in the seismic cross-sections of some profiles acquired to the east of Hersek Peninsula where the focal mechanisms of the aftershocks of the 1999 İzmit earthquake also reveal predominantly reverse faulting mechanisms, as identified by a local dense seismic network.     

Molecular ecological study of <Emphasis Type="Italic">Siganus spinus</Emphasis> and <Emphasis Type="Italic">S. guttatus</Emphasis> from Okinawan waters based on mitochondrial DNA control region sequences

The mitochondrial DNA (mtDNA) control region was sequenced to examine the genetic variability and gene flow of juvenile Siganus spinus and S. guttatus. In total, 461 nucleotide sequences were obtained from 69 specimens of juvenile S. spinus from Okinawa Island and Ishigaki Island, in which 17 variable sites and 22 haplotypes were identified. Haplotype diversity (h) was high (0.9244 in Okinawa and 0.8984 in Ishigaki), whereas nucleotide diversity (π) was low (0.0063 in Okinawa and 0.0059 in Ishigaki). The two populations were not genetically distinct. Siganus guttatus, which do not form large schools at recruitment, in contrast S. spinus, were also analyzed by studying 152 individuals collected off Okinawa Island, Miyako Island, and Ishigaki Island. Of 476 nucleotide sequences, 50 were variable, and 42 haplotypes were identified. Genetic variability values were high (h = 0.8766 and π = 0.0151 in Okinawa; h = 0.9640 and π = 0.0192 in Miyako; h = 0.9161 and π = 0.0199 in Ishigaki). The Okinawa population was genetically isolated from the Miyako and Ishigaki populations. As a result, genetic diversity was high for each of these siganid populations despite their being target species for fisheries; however, the degree of inter-population gene flow was higher for S. spinus than S. guttatus, suggesting that these species exhibit different dispersal strategies.     

Fugacity analysis of polycyclic aromatic hydrocarbons between microplastics and seawater

Recently, the accumulation of plastic debris in the marine environment has become a great concern worldwide. Although plastics are biologically and chemically inert, plastic debris has been suspected of causing adverse effects on ecosystems due to the increase in reactivity by size reduction and/or micropollutants associated with plastics. Because of the high sorption capacity of microplastics toward organic micropollutants, it is suspected that microplastics may play roles in the distribution and fate of micropollutants. In order to quantitatively evaluate the “net flow” of environmental contaminants in water-plastic-organism systems, a fugacity analysis was conducted using concentrations of polycyclic aromatic hydrocarbons (PAHs) in open oceans and in polyethylene as a representative material of plastic debris. Ratio of fugacity in polyethylene to that in seawater showed a decreasing trend with increasing partition coefficient between polyethylene and seawater (K_PE/sw). This indicates that phase equilibrium between polyethylene and seawater is not attained for higher molecular weight PAHs. Disequilibrium of high molecular weight PAHs suggests that transfer from seawater to plastic debris is thermodynamically driven and the role of plastic debris as a vector to transfer them to living organisms would be minimal. However, additives may slowly migrate from plastics into the environment causing potentially serious effects on ecosystems.     

Removal rate and releases of polybrominated diphenyl ethers in two wastewater treatment plants,Korea

Wastewater treatment plants (WWTPs) play an important role in minimizing the release of many pollutants into the environment. Nineteen congeners in two WWTPs in Korea were determined to investigate the occurrence and fate of polybrominated diphenyl ethers (PBDEs) during wastewater treatment processes. The concentration of total PBDEs was 69.6 and 183 ng/L in influent, which declined to 1.59 and 2.34 ng/L in the final effluent, respectively (Tongyeong and Jinhae WWTPs). PBDEs were found to exist mostly in the particulate phase of wastewater, which rendered sedimentation efficient for the removal of PBDEs. BDE-209 was the predominant congener in the influent and sludge. Most of the PBDEs entering the WWTPs presumably ended up in the sludge, with < 2% being discharged with the final effluent. According to the mass loading estimation, every day 2.55–9.29 g PBDEs entered the two WWTPs, 2.8–10.4 g were disposed to landfill sites in sludge form and 0.06–0.12 g were discharged to the surrounding water through final effluent, respectively. Preliminary results indicated that the ecological risk to organisms in soil exposed to PBDEs through the usage of sludge application to agricultural land was relatively low. To our knowledge, this study is the first to report on the removal efficiency of PBDEs in a WWTP in Korea.     

Population Genetic Structure of Rock Bream (<Emphasis Type="Italic">Oplegnathus fasciatus</Emphasis> Temminck &amp; Schlegel, 1884) Revealed by mtDNA COI Sequence in Korea and China

The rock bream, Oplegnathus fasciatus, is a common rocky reef game fish in East Asia and recently has become an aquaculture species. Despite its commercial importance, the population genetic structure of this fish species remains poorly understood. In this study, 163 specimens were collected from 6 localities along the coastal waters of Korea and China and their genetic variation was analyzed with mtDNA COI sequences. A total of 34 polymorphic sites were detected which determined 30 haplotypes. The genetic pattern reveals a low level of nucleotide diversity (0.04 ± 0.003) but a high level of haplotype diversity (0.83 ± 0.02). The 30 haplotypes are divided into two major genealogical clades: one that consists of only Zhoushan (ZS, East China Sea) specific haplotypes from the southern East China Sea and the other that consists of the remaining haplotypes from the northern East China Sea, Yellow Sea, Korea Strait, and East Sea/Sea of Japan. The two clades are separated by approximately 330~435 kyBP. Analyses of AMOVA and F_st show a significant population differentiation between the ZS sample and the other ones, corroborating separation of the two genealogical clades. Larval dispersal and the fresh Yangtze River plume are invoked as the main determining factors for this population genetic structure of O. fasciatus. Neutrality tests and mismatch distribution analyses indicate late Pleistocene population expansion along the coastal waters of Korea and China approximately 133–183 kyBP during which there were periodic cycles of glaciations and deglaciations. Such population information needs to be taken into account when stock enhancement and conservation measures are implemented for this fisheries species.     

Variability in Particle Mixing Rates in Sediments with Polymetallic Nodules in the Equatorial Eastern Pacific as Determined from Measurements of Excess <Superscript>210</Superscript>Pb

Radionuclide activities of ²¹⁰Pb and ²²⁶Ra were measured to determine bioturbation coefficients (D_b) in seven sediment cores from the Korean licensed block for polymetallic nodules in the Clarion–Clipperton Fracture Zone. Variability in D_b is considered in the context of the sedimentological, geochemical, and geotechnical properties of the sediments. D_b values in the studied cores were estimated using a steady-state diffusion model and varied over a wide range from 1.1 to 293 cm²/yr with corresponding mixing depths (L) of 26 to 144 cm. When excepting for spurious results obtained from cores where diffusive mixing does not apply, D_b values range from 1.1 to 9.0 cm²/yr with corresponding mixing depths (L) of 26 to 63 cm. Such wide variability in D_b and L values is exceptional in sites with water depths of ～5000 m and is attributed in this study to an uneven distribution of sediment layers with different shear strengths and total organic carbon (TOC) contents, caused by erosion events. The studied cores can be grouped into two categories based on lithologic associations: layers with high maximum shear strength (MSS) and low TOC content, showing a narrow range of D_b values (1.1–9.0 cm²/yr); and layers with low MSS and high TOC content, yielding much higher D_b values of over 30 cm²/yr. The distribution of different lithologies, and the resultant spatial variability in MSS and labile organic matter content, controls the presence and maximum burrowing depth of infauna by affecting their mobility and the availability of food. This study provides a unique case showing that shear strength, which relates to the degree of sediment consolidation, might be an important factor in controlling rates of bioturbation and sediment mixing depths.     

Experiments on Surface Waves Interacting with Flexible Aquatic Vegetation

Surface wave interaction with aquatic vegetation appears to play a key role in coastal hydro-morpho-dynamics. As an example, the presence of a dense meadow at intermediate water depth is usually associated with a stable and resilient shore. Wave-meadow interactions are investigated here by means of physical modelling, with a focus on wave height distribution and hydrodynamics. The central part of a wave flume is covered by flexible artificial seagrass, composed of polyethylene leaves. This vegetation is tested in both near emergent and submerged conditions. The wave height reduction is evaluated by means of a drag coefficient defined from linear wave theory, which contains all the unknowns of the adopted methodology. The behaviour of such a coefficient is investigated as a function of a wave related Reynolds number. The influence of the flexibility of the leaves is also considered, together with a wave frequency parameter. The results show a complex behaviour with three different trends for near rigid, intermediate or highly flexible leaves. Amplitudes of the orbital velocities are investigated and show a fairly good match with the linear wave theory. On the contrary, the mean velocity along the water column appears to be modified by the seagrass for submerged leaves.