Detecting trends in seagrass abundance using aerial photograph interpretation: Problems arising with the evolution of mapping methods

In the late 1970s and early 1980s an inventory of seagrass distribution in southeast Australia was made from multiscale aerial photographs using a simple analog mapping method, referred to here as theCamera lucida technique. Four priority estuaries were remapped in 2003, also using multi-scale aerial photographs, but using a geographic information system (GIS)-based analog mapping technique. We quantified the degree of error that arose when estimates of seagrass distribution were compared for the two techniques be ressessing. with GIS, the same aerial photographs used earlier for four estuaries: Port Hacking, Bermagui River, Merimbula Lake, and St Georges Basin.Camera lucida produced a larger estimate of total seagrass area than GIS in all four locations: 8% of total seagrass area or 12.9 ha in Port Hacking, 15% or 5 ha in Bermagui River, 20% or 38.0 ha in Merimbula Lake, and 243% or 502.2 ha in St Georges Basin. The consistent and moderate discrepancy in Port Hacking, Bermagui River, and Merimbula Lake was attributed mainly to differences betweenCamera lucida and GIS, such as the tendency ofCamera lucida to overestimate seagrass area by amalgamating disjunct seagrass patches into continuous meadows. The large discrepancy at St Georges Basin was attributed to interoperator error; i.e., the operators who mapped photographs taken in 1979 had widely differing interpretations of the aerial photographs. A 20-yr trend was calculated for each estuary using either theCamera lucida or revised GIS value as the start point. Perceived management status of the seagrass depended greatly on the initial data used. In St Georges Basin, a catastrophic decline (65%, 553.9 ha) occurred based on theCamera lucida-GIS comparison but only a small decline (14.7%, 51.8 ha) when all photos were GIS assessed, In view of the technical developments in habitat mapping, evaluation of change in seagrass abundance using remote sensing needs an assessment of intra-operator error, inter-operator error, and systemic error before maps produced by superseded technology are considered useful baselines.     

Potentiometric titrations of Bacillus subtilis cells to low pH and a comparison of modeling approaches

To provide constraints on the speciation of bacterial surface functional groups, we have conducted potentiometric titrations using the gram-positive aerobic species Bacillus subtilis, covering the pH range 2.1 to 9.8. Titration experiments were conducted using an auto-titrator assembly, with the bacteria suspended in fixed ionic strength (0.01 to 0.3 M) NaClO₄ solutions. We observed significant adsorption of protons over the entire pH range of this study, including to the lowest pH values examined, indicating that proton saturation of the cell wall did not occur under any of the conditions of the experiments. Ionic strength, over the range studied here, did not have a significant effect on the observed buffering behavior relative to experimental uncertainty. Electrophoretic mobility measurements indicate that the cell wall is negatively charged, even under the lowest pH conditions studied. These experimental results necessitate a definition of the zero proton condition such that the total proton concentration at the pH of suspension is offset to account for the negative bacterial surface charge that tends towards neutrality at pH <2.The buffering intensity of the bacterial suspensions reveals a wide spread of apparent pKa values. This spread was modeled using three significantly different approaches: a Non-Electrostatic Model, a Constant Capacitance Model, and a Langmuir-Freundlich Model. The approaches differ in the manner in which they treat the surface electric field effects, and in whether they treat the proton-active sites as discrete functional groups or as continuous distributions of related sites. Each type of model tested, however, provides an excellent fit to the experimental data, indicating that titration data alone are insufficient for characterizing the molecular-scale reactions that occur on the bacterial surface. Spectroscopic data on the molecular-scale properties of the bacterial surface are required to differentiate between the underlying mechanisms of proton adsorption inherent in these models. The applicability and underlying conceptual foundation of each model is discussed in the context of our current knowledge of the structure of bacterial cell walls.     

The spectacular fossils of the ‘water margin’: the Cambrian biota of Chengjiang,Yunnan, China

Shi Nai'an's fourteenth century Chinese epic ‘Water Margin’ tells of the release of 36 heavenly spirits and 72 baleful stars from their captivity beneath a tablet of stone at Mount Longhu in Jiangxi Province. They are reincarnated as the 108 heroes of the Liangshan marsh in Shandong Province, who rise against an unjust world. The virtuous exploits of the ‘108’ were brought to life through the cathode‐ray screens of 1970s television sets, as the TV series The Water Margin introduced heroes like Lin Chong battling his evil nemesis Gao Qiu. Far to the west of Jiangxi Province and several hundred years after the Water Margin during the summer of 1984, a young scientist from Nanjing was working amongst the hills and lakes of southern Yunnan Province. He too overturned a stone slab, releasing from their half‐billion year captivity a cornucopia of new Chinese legends. His name was Xianguang Hou and he had made one of the most momentous fossil discoveries in history, uncovering the exceptionally preserved marine fossils of the Chengjiang biota from the ancient water margin of Cambrian seas.     

Understory and small trees contribute importantly to stemflow of a lower montane cloud forest

Stemflow (Sf) measurements in tropical rain and montane forests dominated by large trees rarely include the understory and small trees. In this study, contributions of lower (1‐ to 2‐m height) and upper (>2‐m height and <5‐cm diameter at breast height [DBH]) woody understory, small trees (5 < DBH < 10 cm), and canopy trees (>10‐cm DBH) to Sf per unit ground area (Sf_a) of a Mexican lower montane cloud forest were quantified for 32 days with rainfall (P) during the 2014 wet season. Rainfall, stemflow yield (Sf_y), vegetation height, density, and basal area were measured. Subsequently, stemflow funneling ratios (SFRs) were calculated, and three common methods to scale up Sf_y from individual trees to the stand level (tree‐Sf_y correlation, P‐Sf_y correlation, and mean‐Sf_y extrapolation) were used to calculate Sf_a. Understory woody plants, small trees, and upper canopy trees represented 96%, 2%, and 2%, respectively, of the total density. Upper canopy trees had the lowest SFRs (1.6 ± 0.5 Standard Error (SE) on average), although the lower understory had the highest (36.1 ± 6.4). Small trees and upper understory presented similar SFRs (22.9 ± 5.4 and 20.2 ± 3.9, respectively). Different Sf scaling methods generally yielded similar results. Overall Sf_a during the study period was 22.7 mm (4.5% of rainfall), to which the understory contributed 70.1% (15.9 mm), small trees 10.6% (2.4 mm), and upper canopy trees 19.3% (4.4 mm). Our results strongly suggest that for humid tropical forests with dense understory of woody plants and small trees, Sf of these groups should be measured to avoid an underestimation of overall Sf at the stand level.     

Recent progress on combining geomorphological and geochronological data with ice sheet modelling,demonstrated using the last British–Irish Ice Sheet

Palaeo-ice sheets are important analogues for understanding contemporary ice sheets, offering a record of ice sheet behaviour that spans millennia. There are two main approaches to reconstructing palaeo-ice sheets. Empirical reconstructions use the available glacial geological and chronological evidence to estimate ice sheet extent and dynamics but lack direct consideration of ice physics. In contrast, numerically modelled simulations implement ice physics, but often lack direct quantitative comparison with empirical evidence. Despite being long identified as a fruitful scientific endeavour, few ice sheet reconstructions attempt to reconcile the empirical and model-based approaches. To achieve this goal, model-data comparison procedures are required. Here, we compare three numerically modelled simulations of the former British–Irish Ice Sheet with the following lines of evidence: (a) position and shape of former margin positions, recorded by moraines; (b) former ice-flow direction and flow-switching, recorded by flowsets of subglacial bedforms; and (c) the timing of ice-free conditions, recorded by geochronological data. These model–data comparisons provide a useful framework for quantifying the degree of fit between numerical model simulations and empirical constraints. Such tools are vital for reconciling numerical modelling and empirical evidence, the combination of which will lead to more robust palaeo-ice sheet reconstructions with greater explicative and ultimately predictive power.     

Linkages between spatio‐temporal patterns of environmental factors and distribution of plant assemblages across a boreal peatland complex

Here we examine the arrangement of plant species across an oligotrophic bog/poor fen peatland complex in the North American boreal plain and the relationships of these species to their physical and chemical environment. A semi‐uniform spatial sampling approach was utilized to describe the species assemblages, pore‐water chemistry and physical condition of 100 plots throughout a single peatland complex. Regardless of sharing the same ground cover of Sphagnum mosses, the remaining species separated into four distinct assemblages, each with unique indicators. These species groups along with associated chemical and physical factors are organized into four ecosites: bog, margin (edge) and two poor fen ecosites. The plant assemblages of this peatland have a complex relationship with numerous gradients, both physical and chemical, including depth to water table, shade, pH, nutrient and base cation. Rather than being homogenous across the landscape, most environmental variables exhibit distinct spatial patterns and do so in relationship to the plant assemblages, forming spatially distinct ecosites across the complex. Base cation concentrations play a smaller role than previously thought in differentiating these ecosites, and in addition to shade and depth to water table, nitrogen in the form of dissolved organic nitrogen was highly related to the placement of these ecosites. Many significant chemical factors appear related to evaporative water loss within the peatland complex, and these chemical factors are used to differentiate the ecosites. However, the mediation of evaporative water loss is due largely to self‐generated responses of the plant assemblages related to shade through plant morphology and peat acrotelm development related to depth to water table. We conclude that plant species and associated environmental gradients act together to form spatially distinct ecosites. The distribution of these ecosites within this large, environmentally complex peatland is largely controlled by differing self‐generated responses along the hydrotopographical gradient of differential water loss.     

Variability in bedform morphology and kinematics with transport stage

Bedform geometry is widely recognized to be a function of transport stage. Bedform aspect ratio (height/length) increases with transport stage, reaches a maximum, then decreases as bedforms washout to a plane bed. Bedform migration rates are also linked to bedform geometry, in so far as smaller bedforms in coarser sediment tend to migrate faster than larger bedforms in finer sediment. However, how bedform morphology (height, length and shape) and kinematics (translation and deformation) change with transport stage and suspension have not been examined. A series of experiments is presented where initial flow depth and grain size were held constant and the transport stage was varied to produce bedload dominated, mixed‐load dominated and suspended‐load dominated conditions. The results show that the commonly observed pattern in bedform aspect ratio occurs because bedform height increases then decreases with transport stage, against a continuously increasing bedform length. Bedform size variability increased with transport stage, leading to less uniform bedform fields at higher transport stage. Total translation‐related and deformation‐related sediment fluxes all increased with transport stage. However, the relative contribution to the total flux changed. At the bedload dominated stage, translation‐related and deformation‐related flux contributed equally to the total flux. As the transport stage increased, the fraction of the total load contributed by translation increased and the fraction contributed by deformation declined because the bedforms got bigger and moved faster. At the suspended‐load dominated transport stage, the deformation flux increased and the translation flux decreased as a fraction of the total load, approaching one and zero, respectively, as bedforms washed out to a plane bed.