Towards a Digital Earth: using archetypes to enable knowledge interoperability within geo-observational sensor systems design

Earth System Science (ESS) observational data are often inadequately semantically enriched by geo-observational information systems to capture the true meaning of the associated data sets. Data models underpinning these information systems are often too rigid in their data representation to allow for the ever-changing and evolving nature of ESS domain concepts. This impoverished approach to observational data representation reduces the ability of multi-disciplinary practitioners to share information in a computable way. Object oriented techniques that are typically employed to model data in a complex domain (with evolving domain concepts) can unnecessarily exclude domain specialists from the design process, invariably leading to a mismatch between the needs of the domain specialists, and how the concepts are modelled. In many cases, an over simplification of the domain concept is captured by the computer scientist. This paper proposes that two-level modelling methodologies developed by health informaticians to tackle problems of domain specific use-case knowledge modelling can be re-used within ESS informatics. A translational approach to enable a two-level modelling process within geo-observational sensor systems design is described. We show how the Open Geospatial Consortium’s (OGC) Observations & Measurements (O&M) standard can act as a pragmatic solution for a stable reference-model (necessary for two-level modelling), and upon which more volatile domain specific concepts can be defined and managed using archetypes. A rudimentary use-case is presented, followed by a worked example showing the implementation methodology and considerations leading to an O&M based, two-level modelling design approach, to realise semantically rich and interoperable Earth System Science based geo-observational sensor systems.     

Using landscape indicators and Analytic Hierarchy Process (AHP) to determine the optimum spatial scale of urban land use patterns in Wuhan,China

Quantifying land use patterns and functions is critical for modeling urban ecological processes, and an emerging challenge is to apply models at multiple spatial scales. Methods of determining the optimum scale of land use patterns are commonly considered using landscape metrics. Landscape metrics are quantitative indicators for analyzing landscape heterogeneity at the landscape level. In this study, due to their widespread use in urban landscape analyses and well-documented effectiveness in quantifying landscape patterns, landscape metrics that represent dominance, shape, fragmentation and connectivity were selected. Five metrics include Patch Density, Contagion, Landscape Shape Index, Aggregation Index and Connectivity. Despite a wide application of landscape metrics for land use studies, the majority mainly focuses on the qualitative analysis of the characteristics of landscape metrics. The previous models are limited in exploring the optimum scale of land use patterns for their lack of quantitation. Therefore, taking the City of Wuhan as an example, the land use unit was treated as a patch, and the landscape pattern metrics at different spatial scales were calculated and compared so as to find the optimum one. Furthermore, a mathematical model of landscape metrics was proposed to quantify the scale effect of urban land use patterns, generating a complementary tool to select the optimum scale. In addition, Analytic Hierarchy Process (AHP) was introduced to determine the respective weights of the chosen landscape metrics in this model. Fractal dimension was ultimately applied to verify the chosen optimum scale of our study region. The results indicated that 60 m is confirmed to be the optimum scale for capturing the spatial variability of land use patterns in this study area.     

Upstream—Downstream Shifts in Peak Recruitment of the Native Olympia Oyster in San Francisco Bay During Wet and Dry Years

Understanding the conditions that drive variation in recruitment of key estuarine species can be important for effective conservation and management of their populations. The Olympia oyster (Ostrea lurida) is native to the Pacific coast of North America and has been a target of conservation efforts, though relatively little information on larval recruitment exists across much of its range. This study examined the recruitment of Olympia oysters at biweekly to monthly intervals at four sites in northern San Francisco Bay from 2010 to 2015 (except 2013). Mean monthly temperatures warmed at all sites during the study, while winter (January–April) mean monthly salinity decreased significantly during a wet year (2011), but otherwise remained high as a result of a drought. A recurring peak in oyster recruitment was identified in mid-estuary, in conditions corresponding to a salinity range of 25–30 and >16 °C at the time of settlement (April–November). Higher average salinities and temperatures were positively correlated with greater peak recruitment. Interannual variation in the timing of favorable conditions for recruitment at each site appears to explain geographic and temporal variation in recruitment onset. Higher winter/spring salinities and warmer temperatures at the time of recruitment corresponded with earlier recruitment onset within individual sites. Across all sites, higher winter/spring salinities were also correlated with earlier onset and earlier peak recruitment. Lower winter salinities during 2011 also resulted in a downstream shift in the location of peak recruitment.     

Evaluating Tidal Wetland Restoration Performance Using National Estuarine Research Reserve System Reference Sites and the Restoration Performance Index (RPI)

Evaluations of tidal wetland restoration efforts suffer from a lack of appropriate reference sites and standardized methods among projects. To help address these issues, the National Estuarine Research Reserve System (NERRS) and the NOAA Restoration Center engaged in a partnership to monitor ecological responses and evaluate 17 tidal wetland restoration projects associated with five reserves. The goals of this study were to (1) determine the level of restoration achieved at each project using the restoration performance index (RPI), which compares change in parameters over time between reference and restoration sites, (2) compare hydrologic and excavation restoration projects using the RPI, (3) identify key indicator parameters for assessing restoration effectiveness, and (4) evaluate the value of the NERRS as reference sites for local restoration projects. We found that the RPI, modified for this study, was an effective tool for evaluating relative differences in restoration performance; most projects achieved an intermediate level of restoration from 2008 to 2010, and two sites became very similar to their paired reference sites, indicating that the restoration efforts were highly effective. There were no differences in RPI scores between hydrologic and excavation restoration project types. Two abiotic parameters (marsh platform elevation and groundwater level) were significantly correlated with vegetation community structure and thus can potentially influence restoration performance. Our results highlight the value of the NERRS as reference sites for assessing tidal wetland restoration projects and provide improved guidance for scientists and restoration practitioners by highlighting the RPI as a trajectory analysis tool and identifying key monitoring parameters.     

Modeling the Population Effects of Hypoxia on Atlantic Croaker (<Emphasis Type="Italic">Micropogonias undulatus</Emphasis>) in the Northwestern Gulf of Mexico: Part 1—Model Description and Idealized Hypoxia

We developed a spatially explicit, individual-based model to analyze how hypoxia effects on reproduction, growth, and mortality of Atlantic croaker in the northwestern Gulf of Mexico lead to population-level responses. The model follows the hourly growth, mortality, reproduction, and movement of individuals on a 300 × 800 spatial grid of 1-km² cells for 140 years. Chlorophyll-a concentration, water temperature, and dissolved oxygen (DO) were specified daily for each grid cell and repeated for each year of the simulation. A bioenergetics model was used to represent growth, mortality was assumed stage- and age-dependent, and the movement behavior of juveniles and adults was modeled based on temperature and avoidance of low DO. Hypoxia effects were imposed using exposure effect submodels that converted time-varying exposures to low DO to reduced hourly growth, increased hourly mortality, and reduced annual fecundity. Results showed that 100 years of either mild or intermediate hypoxia produced small reductions in population abundance, while repeated severe hypoxia caused a 19% reduction in long-term population abundance. Relatively few individuals were exposed to low DO each hour, but many individuals experienced some exposure. The response was dominated by a 5% average reduction in annual fecundity of individuals. Under conditions of random sequences of mild, intermediate, and severe hypoxia years occurring in proportion to their historical frequency, the model predicted a 10% decrease in the long-term population abundance of croaker. A companion paper substitutes hourly DO values from a three-dimensional water quality model for the idealized hypoxia and results in a more realistic population reduction of about 25%.     

Using Simple Dilution Models to Predict New Zealand Estuarine Water Quality

A tool based on simple dilution models is developed to predict potential nutrient concentrations and flushing times for New Zealand estuaries. Potential nutrient concentrations are the concentrations that would occur in the absence of nutrient uptake or losses through biogeochemical processes, and so represent the pressure on a system due to nutrient loading. The dilution modelling approach gives a single time- and space-averaged concentration as a function of flow and nutrient input, with the capability to include seasonal nutrient and flow differences. This tool is intended to be used to identify estuaries likely to be highly sensitive to current nutrient loads based on their physical attributes, or to quickly compare the effects of different land-use scenarios on estuaries. The dilution modelling approach is applied both to a case study of a single New Zealand estuary, and used in a New Zealand-wide assessment of 415 estuaries. For the NZ-wide assessment, annual nutrient loads to each estuary were obtained from a GIS-based land-use model. Comparison with measured data shows that the predicted potential nitrate concentrations are significantly correlated with, but higher than, measured nitrate values from water quality sampling time series. This is consistent with expectations given that the measured concentrations include the effects of nitrogen uptake and loss. The estuary dilution modelling approach is currently incorporated into the GIS-land use model, and is also available as a web-app for assessing eutrophication susceptibility of New Zealand estuaries.     

Balance of Catchment and Offshore Nutrient Loading and Biogeochemical Response in Four New Zealand Coastal Systems: Implications for Resource Management

Nutrient mass balance analyses are a way of obtaining ‘whole system’ viewpoints on coastal biogeochemical functions and their forcing. Seasonal mass balances are presented for four large bay systems in New Zealand (NZ), with the aim of showing how they can inform coastal management. Freshwater volumes, and surface and groundwater, wastewater and atmospheric inorganic and organic nitrogen (N) and phosphorus (P) were balanced with levels of salinity, N and P from ocean surveys, used to determine non-conservative N and P fluxes and, via stoichiometry, carbon (C) fluxes. For Golden and Tasman Bays and Hauraki Gulf, exchange with adjacent shelf waters usually dominated total N supply (80–85%). In contrast, for the Firth of Thames, 51% of total N and 85% of dissolved inorganic N supply originated from its agricultural catchment. Net ecosystem metabolism (NEM; balance of autotrophy and heterotrophy) of Golden and Tasman Bays and Hauraki Gulf was usually nearly balanced. In contrast, Firth NEM was highly seasonally variable, often exhibiting strong heterotrophy coincident with expression of respiration-related stressors (low O₂ and high DIC/low pH). Denitrification accounted for about 51% of total N export across the four systems, signifying its importance as a eutrophication-regulating ecosystem service. Budgets made 12 years apart in the Firth showed decreased denitrification efficiency, coincident with large increases in system N and phytoplankton. The findings for land-ocean nutrient balance, NEM and denitrification showed how mass balance budgeting can inform coastal management, including inventories of nutrient inputs, balances of oceanic and terrestrial nutrient loading, and potential for risk associated with biogeochemical responses.     

Bi-cylindrical conformal map projection

Novel map projections can be derived by solving one of the two primary problems in mathematical cartography: direct and inverse. The combination of the equations of existing projections is a method that belongs to the direct problem category in mathematical cartography. As projections of different types, different classes, and different aspects can be combined, a considerable number of projections can be obtained by using this method. This paper aims to develop a novel projection by combining two conformal cylindrical projections with different aspects, namely normal and transverse, to reduce the distortions in map projection. It is observed that the resulting projection exhibits less distortion than those in normal and transverse cylindrical projections. Furthermore, the developed projection preserves conformality.     

Geodetic observation crucial to sea level monitoring

The relative rate of rise of the sea levels measured by a tide gauge is made of a sea and a land component. The first is usually restricted to the global short-term effect of melting icecaps and expansion of water mass due to global temperature change. The second is often limited to the regional long-term effects of glacial isostatic adjustment (GIA). Sometimes, the regional subsidence, due to compaction and ground water withdrawal, is considered. Here we show as this assumption of regional subsidence fails to represent the relative sea level patterns of Sandy Hook, NJ, and The Battery, NY, as well as of Venezia Punta Della Salute, Venezia II, Trieste and Trieste II. The subsidence of the tide gauge instrument may only be addressed by the precise monitoring of the tide gauge vs. a Global Navigation Satellite System (GNSS) antenna, even if the GNSS tracking is only recent and not yet very accurate. The relative sea level records are much more complicated than what is thought.     

The Red Sea depositional architecture: insights from 3D modeling

More than half a century of geological and exploration studies have taken place in the Red Sea area, and still very limited information is available to the geological community in regard to the lithological distribution and the stratigraphic architecture. In this study, extensive well data was used to build the first lithologic and stratigraphic 3D models of the entire Red Sea to better understand the lithological distribution. The potential models have been constrained by bathymetric and geophysical data. Studied data demonstrate that up to 5 km of sediments were deposited in the Red Sea. It is mainly comprised of limestones, evaporites, and shales. Our models show that the evaporite body represents more than 70% of the Red Sea succession. In particular, the evaporite succession seems to be well developed in the southern region. Salt dome features are present and developed close to the margins. The models suggest that domal formation did not enable thick carbonate accumulation in some parts of the basin but the carbonate generally follows the evaporite trend. The models help to identify the main controls leading to salt diapir by highlighting the distribution of this body and the geometry of geological structures. Syn-rift faulting and rifting has been one of the most prominent structural features. Complex interplay of tectono-stratigraphic events played a significant role in shaping the stratigraphic evolution of the Red Sea basin with multiple evolution phases of paleoenvironment and paleogeographic were recognized based on the models. Our synthesis and interpretation support that moderately deep marine conditions dominated in the Miocene, whereas shallow seas dominated the whole basin during the Plio-Pleistocene period as a result of episodic marine invasion. However, lacustrine environment may have prevailed at the Oligocene time in isolated half grabens.