Remobilization of transition metals in surficial pelagic sediments from the eastern Pacific

The top thirty centimeters of sediment at two sites in the eastern equatorial Pacific contain evidence of post-depositional remobilization of Mn, Fe, Co, Ni, Cu, and Zn. Remobilization takes place as Mn and Fe oxyhydroxides are released to the pore water during the microbially-mediated decomposition of organic matter. Precipitation of the dissolved metals in near-surface more oxic strata controls the solid-phase distribution of Mn, Fe, and Zn. The solid-phase redistribution of Co and Ni requires only suitable material for readsorption. Comparison of pore water fluxes with solid-phase metal distributions in the solid sediment indicates no loss of dissolved metal to the overlying water column at the present time. Loss of Mn during the Quaternary is indicated by the composition of the sediments, however. Leaching experiments suggest that portions of the mobile Mn, Fe, Co, Ni, and Cu are fixed by incorporation in authigenic smectite in the surficial sediments.     

An incremental Knox test for the determination of the serial interval between successive cases of an infectious disease

An estimate of the interval between successive infections is essential for surveillance, control, and modeling of infectious diseases. This paper proposes a method for determining the serial interval when the location and time of onset of illness are known. The theoretical underpinning of this method is the intrinsically spatial nature of disease transmission. Successive infections tend to be closer than unrelated cases of disease and, therefore, exhibit spatial clustering. An incremental Knox type analysis of cases is introduced. Cases occurring at a range of time intervals are examined to determine the serial interval. The significance of clustering is determined using a permutation approach under the null hypothesis of space-time independence. The power of this method is evaluated using an individual level, spatially explicit epidemic simulation. The time increment Knox test is robust to multiple introductions and incomplete sampling. Finally, the increment Knox statistic is used to analyze an outbreak of dengue fever in the city of Florida, Puerto Rico during 1991. Results indicate that the likely interval between successive cases during this outbreak is at least 18–19 days.     

Using multiple scale spatio-temporal patterns for validating spatially explicit agent-based models

Spatially explicit agent-based models (ABMs) have been widely utilized to simulate the dynamics of spatial processes that involve the interactions of individual agents. The assumptions embedded in the ABMs may be responsible for uncertainty in the model outcomes. To ensure the reliability of the outcomes in terms of their space-time patterns, model validation should be performed. In this article, we propose the use of multiple scale spatio-temporal patterns for validating spatially explicit ABMs. We evaluated several specifications of vector-borne disease transmission models by comparing space-time patterns of model outcomes to observations at multiple scales via the sum of root mean square error (RMSE) measurement. The results indicate that specifications of the spatial configurations of residential area and immunity status of individual humans are of importance to reproduce observed patterns of dengue outbreaks at multiple space-time scales. Our approach to using multiple scale spatio-temporal patterns can help not only to understand the dynamic associations between model specifications and model outcomes, but also to validate spatially explicit ABMs.     

Gene structure of the novel cytochrome P4501D1 genes in stickleback (Gasterosteus aculeatus) and medaka (Oryzias latipes)

The cytochrome P450 1 (CYP1) family has expanded with the addition of the CYP1B and CYP1C subfamilies. We recently identified a new CYP1 subfamily in zebrafish, CYP1D, with a single gene, CYP1D1. Here we examined sequences found in other fish genomes, i.e., stickleback (Gasterosteus aculeatus) and medaka (Oryzias latipes), for similarities among fish CYP1D1 genes. The full-length deduced amino acid sequences for CYP1D1 in these two species averaged about 43% identity to the CYP1As, but nearly 50% when sequence alignment ambiguities were masked. CYP1D1 has seven exons, similar in size and position to the exons in CYP1D1 and CYP1A in zebrafish. However, the intronic distances were substantially smaller in the medaka and stickleback. There also were differing numbers of putative xenobiotic response elements in the CYP1D1 of the various species. Whether the stickleback or medaka genes are inducible by aryl hydrocarbon receptor (AHR) agonists is yet to be determined.     

Lunar surface electric potential changes associated with traversals through the Earth's foreshock

We report an analysis of one year of Suprathermal Ion Detector Experiment (SIDE) Total Ion Detector (TID) “resonance” events observed between January 1972 and January 1973. The study includes only those events during which upstream solar wind conditions were readily available. The analysis shows that these events are associated with lunar traversals through the dawn flank of the terrestrial magnetospheric bow shock. We propose that the events result from an increase in lunar surface electric potential effected by secondary electron emission due to primary electrons in the Earth's foreshock region (although primary ions may play a role as well). This work establishes (1) the lunar surface potential changes as the Moon moves through the terrestrial bow shock, (2) the lunar surface achieves potentials in the upstream foreshock region that differ from those in the downstream magnetosheath region, (3) these differences can be explained by the presence of energetic electron beams in the upstream foreshock region and (4) if this explanation is correct, the location of the Moon with respect to the terrestrial bow shock influences lunar surface potential.     

Tidal constants for McMurdo sound,Antarctica

Harmonic constants were evaluated from 30 days’ tidal records at a position about 0.25 miles (0.44 km) south of Winter Quarters Bay, McMurdo Sound, Antarctica. The main components are the declinational diurnal constituents O1 and K1. Comparison of the constants with those previously evaluated from nearby Pram Point (near Scott Base) shows that the amplitudes are smaller at McMurdo Sound, and that the high tide at McMurdo occurs about one hour after that at Scott Base.     

An occurrence of low water temperatures on the north Canterbury coast (note)

A recorded instance of a rapid decrease in sea surface temperature on 10 April 1968 on the north Canterbury coast is found to be caused by increased transport of the Southland Current rather than by wind‐derived upwelling, and shows that gross changes in coastal current characteristics on the north Canterbury coast can occur under particular meteorological conditions.     

Hydrology and circulation in central and southern Cook Strait,New Zealand

The circulation and hydrology of Cook Strait are defined using both the geostrophic method and the hydrologiieal characteristics of the different water masses. Cool, low salinity water in a branch of the Southland Current, which extends along the east coast of the South Island into Cook Strait, mixes above the depth of the continental shelf with warmer, more saline Subtropical Water from both the D'UrVille Current and the East Cape Current. Subtropical Water derived from the East Cape Current occupies the Cook Strait Canyon; below 100 m this water meets the Subtropical Water of the southwest‐flowing D'Urville Current in a convergence situated in the Oook Strait Narrows. Mixed water derived from all three currents passes eastwards across Cook Strait and up the east coast of the North Island.     

Physical oceanographic observations in Marlborough Sounds

Results of temperature and salinity observations with depth, current drogue measurements in Pelorus and Queen Charlotte Sounds, and a current meter record from Pelorus Sound are discussed. The circulation in both Sounds is mainly tidal. Salinities in Pelorus Sound were found to be lower than in Queen Charlotte Sound; there was a rapid decrease in salinity near the head of Pelorus Sound where the Pelorus and Kaituna rivers enter it. Residence time of water in Pelorus Sound was estimated to be about 21 days.     

Stability of some New Zealand coastal inlets

The relation of tidal compartments to entrance cross‐sectional areas is examined for 20 coastal inlets. Sixteen inlets conform to a linear relationship, which is consistent with stable entrances the sizes of which are determined by the ability of the tidal flow to transport sediment. Based on this criterion deposition should be taking place at the entrances of the other four inlets: Wellington, Lyttelton, and Akaroa harbours, and Paterson Inlet. Available data confirm this for Wellington and Lyttelton Harbours.