Detection of Toxoplasma gondii in Turkish River and Drinking Water Samples by Different PCR and LAMP Methods

In this study, we investigated the occurence of Toxoplasma gondii and checked the sequencing in 56 samples collected from in the Ordu province, Middle Black Sea, Turkey. The samples were collected from drinking and river water and DNA was extracted from all samples. After DNA isolation, the 18S rRNA target gene and B1 gene of T. gondii were amplified by conventional PCR, nested PCR, and loop‐mediated isothermal amplification (LAMP) assay, respectively. Twenty out of 56 samples (35.7%) were Toxoplasma positive by LAMP. The conventional PCR and nested PCR confirmed that 12 and 16 out of 56 samples (21.42 and 28.57%) were positive for Toxoplasma, respectively. All drinking water samples were negative by all three methods. Thirteen Toxoplasma nested PCR products were successfully sequenced. This study achieved detection and sequencing of Toxoplasma from water supplies in the Middle Black sea area in Turkey.     

Optimization of constitutive parameters of foundation soils k-means clustering analysis

The goal of this study was to optimize the constitutive parameters of foundation soils using a k-means algorithm with clustering analysis. A database was collected from unconfined compression tests, Pr...     

Response Surface Modeling and Optimization of Microwave‐Activated Persulfate Oxidation of Olive Oil Mill Wastewater

Olive oil mill wastewater (OMW) is environmentally hazardous not only because it contains high recalcitrant and toxic compounds, but also due to its high organic load and turbidity. In this study, oxidation of OMW by microwave (MW)‐activated persulfate is investigated. Box–Behnken design is applied to investigate the effects of operating conditions on operating cost, organic matter, and color removal. Multi response optimization is performed according to minimum operating cost, maximum organic matter and color removal efficiencies. At optimum conditions (persulfate anion dose of 266 g L^?1, oxidation duration of 23.58 min, MW power of 567 W, and initial pH 2), chemical oxygen demand (COD) removal of 63.38%, color removal of 94.85%, and operating cost of 0.0633 Euro/g total organic carbon (TOC) removal are found. The biochemical oxygen demand (BOD₅)/COD ratio is increased from 0.144 to 0.285. Results of Pareto analysis show individual effect of MW power is 92.81% for TOC removal, 15.52% for color removal, 68.99% for operating cost, respectively. According to the results, it is not recommended to use this process as an ultimate treatment unit due to the high amount of oxidizing agent consumed. Instead, it is recommended to be used as a pre‐ or post‐treatment step.     

Crushed recycled glass as a filter medium and comparison with silica sand

The objective of this work was to evaluate crushed recycled glass as a medium for rapid filtration. In the first part of this work, physical and hydraulic characteristics of the glass medium were studied. In the second part, pilot scale inline filtration experiments were carried out using raw waters from three different water sources. Two physically identical filter columns were operated in parallel in all the experiments. One filter contained a silica sand medium that is widely used in Turkey, whereas the other filter contained crushed recycled glass. Experiments were repeated five times as follows: (i) Without the use of a coagulant, (ii–iii) with 5 mg/L and 10 mg/L of alum, and (iv–v) with 5 mg/L and 10 mg/L of ferric chloride. Turbidity, particle counts, and head losses were measured and compared as functions of time. The following were observed: (1) Provided that a coagulant was used, the filter containing crushed glass produced effluent turbidities and particle counts similar to those obtained with the sand filter. (2) The crushed glass medium generated both a smaller clean‐bed head loss and smaller clogging head losses than those of the sand filter. It is concluded that crushed glass shows significant promise as an alternative to silica sand in rapid filtration.     

Impact of a new invasive ctenophore (Mnemiopsis leidyi) on the zooplankton community of the Southern Caspian sea

The invasive ctenophore Mnemiopsis leidyi (Agassiz), which was transported from the Black Sea into the Caspian Sea at the end of the 1990s, has negatively affected the ecosystem of the Caspian Sea. Zooplankton abundance, biomass and species composition were evaluated on the Iranian coast of the Caspian Sea during 2001–2006. A total of 18 merozooplankton (13 species composed of larvae of benthic animals) and holozooplankton (four Copepoda and one Cladocera) species were identified. The total number of zooplankton species found here was 50% less than in a previous investigation performed in the same region in 1996 before the introduction of Mnemiopsis leidyi into the Caspian Sea. Cladocera species seemed to be highly affected by the invasion of Mnemiopsis leidyi; only one species, Podon polyphemoides, remained in the study area, whereas 24 Cladocera species were found in the study carried out in 1996. Whereas among the Copepoda Eurytemora minor, Eurytemora grimmi, Calanipeda aquae dulcis and Acartia tonsa that were abundant before the Mnemiopsis leidyi invasion, only A. tonsa (copepodites and adults) dominated the inshore and offshore waters after the invasion. The maximum in zooplankton abundance (22,088 ± 24,840 ind·m^?3) and biomass (64.1 ± 56.8 mg·m^?3) were recorded in December 2001 and August 2004, respectively. The annual mean zooplankton abundance during 2001–2006 was in the range of 3361–8940 ind·m^?3; this was two‐ to five‐fold less than the zooplankton abundance in 1996. During 2001–2006, the highest abundance and biomass of Mnemiopsis leidyi were observed during summer‐autumn months coincident with warm temperatures and generally when the abundance of other zooplankton organisms was low.     

Comparison of Planimetric and Thematic Accuracy of OrbView-3 and IKONOS Images

Spatial mapping from space using high-resolution satellite sensor data instead of conventional data collection techniques widely gained popularity. This study aims to analyze the planimetric and thematic accuracy of high-resolution OrbView-3 and IKONOS orthoimages. OrbView-3 and IKONOS images of a test area were acquired and these images were geometrically corrected using rational polynomial functions to conduct accuracy assessment. 40 Ground Control Points (GCPs) generated from static Global Positioning System (GPS) survey were used in the orthorectification procedure. 182 Test Points (TPs) produced from terrestrial surveying technique were used to analyze the accuracy of orthorectifications. Root Mean Square Error (RMSE) values obtained for GCPs and TPs were used to determine the planimetric accuracy of these images. Thematic accuracy analyses were conducted in radiometric and spatial base. Transects, lines and polygons were created to analyze the radiometric quality of data sets and to determine minimum distinguishable distance and distinguishable area. Both planimetric and thematic accuracy analyses illustrated that OrbView-3 and IKONOS images could be used to create 1:10000 scale map of the concerned region with appropriate planimetric and thematic quality.     

Sediment concentrations of heavy metals in the Homa Lagoon (Eastern Aegean Sea): Assessment of contamination and ecological risks

The concentrations of heavy metals and organic carbon in sediment of the Homa Lagoon which is one of the most productive lagoons and commercial important active fish trap in the Eastern Aegean Sea, were investigated in order to describe the temporal and spatial distributions of metals. These results were used to evaluate possible ecological risks that could be a problem for the environment of the lagoon in the future. Sediments were enriched with Cr, Ni and considered as heavily polluted per the SQG. The C_f of Ni and Cr were presented moderate level of contamination in this area. The C_d levels indicated moderate degree of contamination at station B, C, D and E due to agricultural drainage water, industrial and domestic wastewater, are transported by the Gediz River. Sediments from Homa Lagoon were most toxic for Ni due to exceedances of the TEL and PEL values.     

Discovery of the Late Triassic (Middle Carnian–Rhaetian) radiolarians in the volcano-sedimentary sequences of the Kocali Complex,SE Turkey: Correlation with the other Tauride units

The Kocali Complex in SE Turkey includes pelagic sediments (pelagic limestones, cherts, etc.), basic volcanic rocks of oceanic crust origin together with platform-derived sediments. Its depositional age was previously assigned as Late Jurassic–Early Cretaceous. In order to study the radiolarian contents of volcano-sedimentary sequences in this complex, six stratigraphic sections have been measured mainly at the NE and NW Adiyaman city.Radiolarian faunas from these stratigraphic sections reveal that the age of these sequences ranges from middle Carnian to Rhaetian. Based on these data, the depositional age of the complex is older than the previously assigned. Lithological characteristics (widespread Triassic basic volcanic rocks associated with pelagic sediments) and radiolarian contents of these sequences have close similarities with the sequences of the Alakircay Nappe of the Antalya Nappes in western and central Taurides.Based on taxonomic studies, 99 taxa have been determined of which one genus (Adiyamanium) and four species (Monocapnuchosphaera kocaliensis, Paronaella speciosa, Ferresium okuyucui and Adiyamanium crassum) are described as new.     

Transferring the international DRR policy into the local context

The disaster experiences of the past resulted in the need for a new international policy. The paper examines the transfer of the international policy for disaster risk reduction (DRR) into a local context, Turkey and Turkish, where new and old perspectives meet. Analyzed is a corpus consisting of two texts, with the purpose of examining the concepts’ actual use and contexts shaped by different attitudes, based on the three-dimensional framework of critical discourse analysis, translation studies and conceptual history. The concept transfer from international to the local level inevitably involves translation. The texts included “new” DRR terms as a result of the concealed translation attempts to adjust the old and contemporary terminologies. Thus, non-functional terms with blurred meanings arose. The awareness that such processes of transfer are complex would help to overcome this kind of simplistic top-down approaches and to give priority to “communicative labor.” The framework is not presented due to space limitations. It was also observed that the Turkish terminology lacks clear definitions. To affirm this, an in-depth analysis is needed. Terms transferred across contexts may end lacking conceptualizations due to non-functional translation choices. When adopting new social policies, this can be overcome through making effort for communication. This research looks at conceptual struggles related to social issues from a different aspect. The vague terms and inefficiencies in social implementations can be avoided by authorities being aware that discourse, translation and their production are parts of social action.