Local remineralization patterns in the mesopelagic zone of the Eastern North Atlantic, off the NW Iberian Peninsula

The short-time-scale variability of the remineralization patterns in the domain of Eastern North Atlantic Central Waters (ENACW) off the NW Iberian Peninsula is studied based on biogeochemical data (oxygen, nutrient salts, total alkalinity, pH, dissolved organic matter and fluorescence of dissolved humic substances) collected weekly between May 2001 and April 2002. The temporal variability of inorganic variables points to an intensification of remineralization during the summer and autumn, with an increase of nutrients, total inorganic carbon and fluorescence and a decrease of oxygen. During the subsequent winter mixing, there is a biogeochemical reset of the system, with lower nutrients, total inorganic carbon and fluorescence and higher oxygen. In contrast to inorganic variables, the levels of dissolved organic matter in the ENACW seem to respond to short-term events probably associated with fast sinking particles, where solubilisation of organic matter prevails over remineralization. Applying a previously published stoichiometric model, we observed a vertical fractionation of organic-matter remineralization. Although there is a preferential remineralization of proteins and P compounds in the entire domain of ENACW, the percentage was higher in the upper ENACW (σ<27.10 kg/m³) than in the lower; the percentage of N and P compounds in the oxidised organic matter was >80% for the upper ENACW and 63% for the lower. Likewise, the redissolution of calcareous structures contributes about 6% and 13% to the carbon regenerated in the upper and lower layers of ENACW, respectively.     

Sources and biogeochemical cycling of particulate selenium in the San Francisco Bay estuary

As part of a study of estuarine selenium cycling, we measured the concentration, chemical form (speciation), and distribution of particulate selenium under various river flow conditions in the North San Francisco Bay (from the Golden Gate to the Sacramento and San Joaquin Rivers). We also conducted laboratory studies on the accumulation of selenium by phytoplankton, the critical first step in the transformation of dissolved to particulate selenium. Total particulate selenium concentration in the North SF Bay was relatively constant between high and low flow periods, ranging spatially from 0.05 to 0.35 nmol l⁻¹ and comprising between 5 and 12% of the total water column selenium inventory. Mean concentrations were generally highest in the Carquinez Strait–Suisun Bay region (salinity 0–17) and lowest in Central Bay. However, selenium content of suspended particles varied with river flow, with higher content during low flow (9.76 ± 4.17 nmol g⁻¹; mean ± sd; n = 67) compared to high flow (7.10 ± 4.24 nmol g⁻¹; n = 39). Speciation analyses showed that most particulate selenium is organic selenide (45 ± 27%), with a smaller proportion (typically <30%) of adsorbed selenite + selenate and a varying proportion (35 ± 28%) of elemental selenium. Based on the amount of elemental selenium in the seston (total suspended material), we calculate that resuspension of estuarine sediments could contribute 29–100% of particulate selenium in the water column. While selenium content of SF Bay seston (>0.4 μm) is relatively unenriched compared to phytoplankton (13.6–155 nmol g⁻¹ dry weight) on a mass basis, when normalized to carbon or nitrogen, seston contains a similar selenium concentration to SF Bay sediments or phytoplankton cultures. SF Bay seston is thus comprised of selenium-rich phytoplankton and phyto-detritus, but also inorganic clay mineral particles that effectively “dilute” total particulate selenium. Selenium concentrations in algal cultures (11 species) exposed to 90 nmol l⁻¹ selenite show relatively large differences in selenium accumulation, with the diatoms, chlorophytes and cryptophytes generally having lower selenium cell content (3.8 ± 2.7 × 10⁻⁹ nmol selenium cell⁻¹) compared to the dinoflagellates (193 ± 73 × 10⁻⁹ nmol selenium cell⁻¹). Because phytoplankton are such a rich (but variable) source of selenium, their dynamics could have a profound effect on the particulate selenium inventory in the North SF Bay.     

Atmospherically-promoted photosynthetic activity in a well-mixed ecosystem: Significance of wet deposition events of nitrogen compounds

Wet atmospheric deposition of dissolved N, P and Si species is studied in well-mixed coastal ecosystem to evaluate its potential to stimulate photosynthetic activities in nutrient-depleted conditions. Our results show that, during spring, seawater is greatly depleted in major nutrients: Dissolved Inorganic Nitrogen (DIN), Dissolved Inorganic Phosphorus (DIP) and Silicic acid (Si), in parallel with an increase of phytoplanktonic biomass. In spring (March–May) and summer (June–September), wet atmospheric deposition is the predominant source (>60%, relative to riverine contribution) for nitrates and ammonium inputs to this N-limited coastal ecosystem. During winter (October–February), riverine inputs of DIN predominate (>80%) and are annually the most important source of DIP (>90%). This situation allows us to calculate the possibility for a significant contribution to primary production in May 2003, from atmospheric deposition (total input for DIN ≈300 kg km⁻² month⁻¹). Based on usual Redfield ratios and assuming that all of the atmospheric-derived N (AD-N) in rainwater is bioavailable for phytoplankton growth, we can estimate new production due to AD-N of 950 mg C m⁻² month⁻¹, during this period of depletion in the water column. During the same episode (May 2003), photosynthetic activity rate, considered as gross primary production, was estimated to approximately 30 300 mg C m⁻² month⁻¹. Calculation indicates that new photosynthetic activity due to wet atmospheric inputs of nitrogen could be up to 3%.     

Detection of deep water benthic macroalgae using image-based classification techniques on multibeam backscatter at Cashes Ledge,Gulf of Maine,USA

Benthic macroalgae form an important part of temperate marine ecosystems, exhibiting a complex three-dimensional character which represents a vital foraging and spawning ground for many juvenile fish species. In this research, image-based techniques for classification of multibeam backscatter are explored for the detection of benthic macroalgae at Cashes Ledge in the Gulf of Maine, USA. Two classifications were performed using QTC-Multiview, differentiated by application of a threshold filter, and macroalgal signatures were independently extracted from the raw sonar datagrams in Matlab. All classifications were validated by comparison with video ground-truth data. The unfiltered classification shows a high degree of complexity in the shallowest areas within the study site; the filtered demonstrates markedly less variation by depth. The unfiltered classification shows a positive agreement with the video ground-truth data; 82.6% of observations recording Laminaria sp., 39.1% of Agarum cribrosum and 100.0% (n = 3) of mixed macroalgae occur within the same acoustically distinct group of classes. These are discrete from the 8.1% recorded agreement with absences and nulls (>40 m) of macrophytes (n = 32) from a total of 86 ground-truth locations. The results of the water column data extraction (WCDE) show similar success, accurately predicting 78.3% of Laminaria sp. and 30.4% of A. cribrosum observations.     

Seasonal variability in somatic and reproductive investment of the bivalve Scrobicularia plana (da Costa, 1778) along a latitudinal gradient

Monthly investment in soma and gonads in the bivalve Scrobicularia plana is described for three populations along its distributional range: Minho estuary, Portugal; Westerschelde estuary, The Netherlands and Buvika estuary, Norway. Seasonal cycles in body mass (BMI), somatic mass (SMI) and gonadal mass (GMI) indices were observed for all populations. In Portugal, BMI and SMI peaked in mid-autumn, while in The Netherlands both indices were at their highest in mid-spring. Norway showed a different pattern with two distinct peaks: one in mid-autumn and a second peak in spring. GMI reached maximum values in July in Portugal and Netherlands and in June in Norway. Overall, mean BMI and SMI were lower in Portugal while mean GMI was lower in Norway. The spawning period lasted the whole summer in Portugal, but was shorter (only two months) in The Netherlands and Norway. The reproductive investment in The Netherlands was significantly higher than in Portugal and Norway, with the lowest values being observed in Norway. Differences in annual cycles between populations were attributed to environmental factors, namely temperature and food availability. Temperature seems important in shaping the reproductive pattern with more northern populations showing shorter reproductive periods starting later in the year, and a lower reproductive output. In addition, winter water temperatures can explain the lower mean body and somatic mass values observed in Portugal. Food availability influenced the physiological performance of the species with peaks in somatic mass coinciding with phytoplankton blooms. This relation between physiological performance and environmental factors influences S. plana distribution, densities and even survival, with natural consequences on its commercial importance.     

Differences in the neighborhood: Structural variations in the carapace of shore crabs Carcinus maenas (Decapoda: Portunidae)

The present study compared the carapace structure of Carcinus maenas in two nearby sites (2 km apart) within Minho estuary, submitted to different physicochemical and ecological conditions (water temperature, pH, crabs’ density and sex ratio). The carapace structure of the carapace and chelae of the crabs presented significant differences between sampling sites (t-test; p < 0.01). The SIMPER analysis revealed that the Weight/CW and Thickness/CW ratios explained all the dissimilarities found among sites. Overall, the male carapace was proportionally thicker at station 2 (t-test; p < 0.01), while the female carapace was proportionally thicker at station 1 (t-test; p < 0.001). A thicker carapace can be advantageous when competing for food or a sexual partner. We hypothetized that, since at station 2, the density of individuals was twice higher than at station 1, it is likely that agonistic encounters are more frequent, thus favouring a thicker carapace.     

Using existing scientific capacity to set targets for ecosystem-based management: A Puget Sound case study

Human actions have altered the structure and function of coastal ecosystems worldwide. In many locations, the overall portfolio of goods, cultural amenities, and supporting services provided by the marine environment has deteriorated. Ecosystem-based management (EBM) offers significant promise for addressing these issues because it is a comprehensive and integrated approach designed to reconcile conflicts and trade-offs among users of marine resources. A key step in the implementation of EBM is the establishment of target reference levels, or desired states, for indicators that reflect the status of the ecosystem. This paper reviews five approaches, borrowed from a variety of disciplines, to establish target reference levels for EBM. The approaches include the use of existing reference levels, reference directions, and reference levels based on nonlinear functional relationships, baselines, or social norms. Each approach is particularly suitable for EBM because it can be used alone or in combination with others to contextualize status for a diverse suite of ecosystem goals influenced by a wide variety of human activities. Perhaps most importantly, these approaches offer a prospectus for moving forward with EBM by using readily available information, motivating existing scientific capacity, and addressing trade-offs implicit to the setting of targets. This last point is articulated via examples of how each type of reference level might be applied in Puget Sound, WA, USA, where the efforts of scientists, managers, and policy makers have aligned recently in the interest of EBM implementation.     

Impact of mega-scale sand extraction on tidal dynamics in semi-enclosed basins: An idealized model study with application to the Southern North Sea

Long-term considerations of repeated and increasing sand extraction on the Netherlands Continental Shelf (North Sea) may lead to the creation of a mega-scale extraction trench in front of the Dutch coast (length hundreds of km, width over 10 km, depth several m). We investigate the impact of such a huge topographic intervention on tidal dynamics, which is a key aspect in hydrodynamics, and indirectly also affecting morphodynamics and ecology.     

Characterization of dissolved organic matter across the Subtropical Convergence off the South Island,New Zealand

Dissolved organic matter (DOM) was investigated along a gradient across the Subtropical Convergence (STC) off the South Island, New Zealand. Ultrahigh resolution electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS), excitation emission matrix fluorescence (EEM) spectroscopy, and molecular lignin analysis techniques were used to study this DOM. The analysis revealed a group of compounds found only in the coastal DOM samples, which were also characterized by an elevated terrestrial DOM fluorescence pattern and elevated lignin content if compared to the offshore samples. This group exhibited a high degree of carbon unsaturation, as evident from high double bond equivalence minus oxygen values (DBE-O > 9) and maximum fluorescence intensity. Sulfur-containing molecular formulae for summer DOM samples were much more abundant across the entire transect of the STC compared to winter and exhibited distinctly different hydrogen:carbon and oxygen:carbon elemental ratios, suggesting a possible correlation between biological activity and sulfur compounds. The molecular formulae common to all STC samples were compared with those calculated for DOM extracted from freshwater collected from a stream discharging into Doubtful Sound (West Coast, New Zealand). ESI-FT-ICR-MS measurements undertaken in negative electrospray ionization (ESI?) mode indicated that 30% of the molecular formulae were present in both types of DOM, while in positive ESI mode (ESI+) over 90% of the formulae were present in all samples. Hence, a significant portion of the molecular formulae assigned to the solid-phase extractable DOM pool (SPE-DOM) appear to be identical in oceanic and freshwater samples.     

Corrections to ocean surface forcing in the California Current System using 4D variational data assimilation

The option for surface forcing correction, recently developed in the 4D-variational (4DVAR) data assimilation systems of the Regional Ocean Model System (ROMS), is presented. Assimilation of remotely-sensed (satellite sea surface height anomaly and sea surface temperature) and in situ (from mechanical and expendable bathythermographs, Argo floats and CTD profiles) oceanic observations has been applied in a realistic, high resolution configuration of the California Current System (CCS) to sequentially correct model initial conditions and surface forcing, using the Incremental Strong constraint version of ROMS-4DVAR (ROMS-IS4DVAR). Results from both twin and real data experiments are presented where it is demonstrated that ROMS-IS4DVAR always reduces the difference between the model and the observations that are assimilated. However, without corrections to the surface forcing, the assimilation of surface data can degrade the temperature structure at depth. When using surface forcing adjustment in ROMS-IS4DVAR the system does not degrade the temperature structure at depth, because differences between the model and surface observations can be reduced through corrections to surface forcing rather than to temperature at depth. However, corrections to surface forcing can generate abnormal spatial and temporal variability in the structure of the wind stress or surface heat flux fields if not properly constrained. This behavior can be partially controlled via the choice of decorrelation length scales that are assumed for the forcing errors. Abnormal forcing corrections may also arise due to the effects of model error which are not accounted for in IS4DVAR. In particular, data assimilation tends to weaken the alongshore wind stress in an attempt to reduce the rate of coastal upwelling, which seems to be too strong due to other sources of error. However, corrections to wind stress and surface heat flux improve systematically the ocean state analyses. Trends in the correction of surface heat fluxes indicate that, given the ocean model used and its potential limitations, the heat flux data from the Coupled Ocean–Atmosphere Mesoscale Prediction System (COAMPS) used to impose surface conditions in the model are generally too low except in spring-summer, in the upwelling region, where they are too high. Comparisons with independent data provide confidence in the resulting forecast ocean circulation on timescales ～14 days, with less than 1.5 °C, 0.3 psu, and 9 cm RMS error in temperature, salinity and sea surface height anomaly, respectively, compared to observations.