Development of two novel CYP-antibodies and their use in a PCB exposure experiment with Mytilus edulis

In an attempt to learn more about the cytochrome P450 (CYP) system of mussels, we used protein databases and alignment software to extract highly conserved CYP sequences. From these alignments synthetic peptides were produced and used for rabbit immunisation, which yielded polyclonal antibodies against the CYP families 2 and 4. The antibodies were evaluated with Western Blot and ELISA assays, using digestive gland microsomal samples from the mussel Mytilus edulis. Western Blots revealed immunoreactions for both antibodies. The anti-CYP2 sequence rendered one major immunopositive protein of approximately 49 kDa size, and weak signals for proteins of approximately 41 and 56 kDa size. The anti-CYP4 sequence rendered two major bands of approximately 56 and 59 kDa size, and also a weak immunoreaction with a protein of approximately 43 kDa size. ELISA rendered only weak signals even with a 1:50 dilution of IgG-purified serum. A 10-day exposure to Aroclor 1254 did not appear to affect any of the immunopositive proteins, while total PCBs in soft bodies increased from 14-40 ng/g DW in controls to 373-638 ng/g DW in exposed mussels.     

Estimation of Sea Ice Thickness from SARAL/AltiKa in Drifting Orbit Phase

Abstract

Intra and inter-annual variations in the sea ice thickness are highly sensitive indicators of climatic variations undergoing in the earth’s atmosphere and oceans. This paper describes the method of estimating sea ice thickness using radar waveforms data acquired by SARAL/Altika mission during its drifting orbit phase from July 2016 onwards yielding spatially dense data coverage. Based on statistical analysis of return echoes, classification of the surface has been carried out in three different types, viz. floe, lead and mixed. Time delay correction methods were suitably selected and implemented to make corrections in altimetric range measurements and thereby freeboard. By assuming hydrostatic equilibrium, freeboard data were converted into sea ice thickness. Results show that sea ice thickness varies from 4 to 5?m near ice shelves and 1 to 2.5?m in the marginal sea ice regions. Freeboard and sea ice thickness estimates were also validated using NASA’s Operation Ice Bridge (OIB) datasets. Freeboard measurements show very high correlation (0.97) having RMSE of 0.13. Overestimation of approximately 1–2?m observed in the sea ice thickness, which could be attributed to distance between AltiKa footprint and OIB locations. Moreover, sensitivity analysis shows that snow depth and snow density over sea ice play crucial role in the estimation of sea ice thickness.     

Occurrence of Nummulitic coralline limestone from offshore Palar Basin,Bay of Bengal,India

Abstract

Palar basin is located between Pennar and Cauvery sedimentary basins of East coast of India in Bay of Bengal, northeast Indian Ocean. Sea floor drill (Wire-line Autonomous Coring System – WACS) with operational capability of up to 3000?m water depth was developed to collect long cores from deep sea floor for geotechnical and ocean resource assessment studies. During the drilling operation it encountered Nummulitic coralline limestone of Lower Eocene age at 18 meters below the seafloor (mbsf) at 850?m water depth indicating carbonated platform presence for the first time at the study region. Bathymetry contour from Naval Hydrography Chart and General Bathymetric Chart of the Oceans (GEBCO) has revealed the presence of shallow mounds from 50 to 200?m depth closure contour near the sampling site at 850?m water depth which might be a submerged carbonated structure. Since, Nummulites are shallow water dwelling fauna (<20?m depth) but its occurrence at 18 mbsf in 850?m water depth is recorded because of the advancement in technology tool for long core sampling by means of sea floor drill.     

Geopotential topography of deep levels in the Pacific Ocean

After examination of the baroclinic structure below 3000 db, recent data were used to map the geopotential topography at 1000, 1500, and 2000 db (referred to 3000 db) in the Pacific Ocean. In the high-latitude regions and in the western boundary currents, considerable relief is present at 1000 and 1500 db, and the Circumpolar Current is still well-developed at 2000 db. The geostrophic circulation inferred is very similar to the surface circulation in these areas. Neglect of the structure below 1000 db results in appreciable errors in estimates of the transport of these currents; direction of near-surface flow is properly shown, however, and computed speeds are not greatly in error. In the equatorial Pacific and central North Pacific, little relief is present, and the trends are generally unlike the surface flow.     

The impact of mesoscale eddies on plankton dynamics in the upper ocean

A coupled QuasiGeostrophic mixed-layer ECOsystem model (QGECO) is used to investigate the impact of the underlying mesoscale eddy field on the spatial and temporal scales of biological production and on overall rates of primary productivity. The model exhibits temporal trends in the biological and physical fields similar to those observed in the North Atlantic; i.e. the mixed layer shallows in spring causing a rapid increase in phytoplankton concentrations and a corresponding decline in nutrient levels. Heterogeneity is produced in the mixed layer through Ekman pumping velocities resulting from the interaction of windstress and surface currents. This variability impacts on biological production in two ways. Firstly, spatial variations in the depth of the mixed layer affect the photosynthetically active radiation (PAR) availability and hence production rates, and secondly, eddy enhanced exchange between the surface water and those at depth bring additional nutrients into the euphotic zone. These processes result in significant spatial and temporal heterogeneity in the ecosystem distributions.Investigation of the spatial heterogeneity of the biological system finds variability to be significantly greater than that of the mixed layer. The relationship between the eddy field and the ecosystem is investigated. The structure and correlation of the biogeochernical fields change with time. The biological fields are found to have a shorter horizontal scale, but whiter spectrum than the underlying eddy field.Overwinter conditions are found to have a profound effect on the variability, size and timing of the following spring bloom event. Variations in the nitrate levels are primarily responsible for the variability in the biological system in the first year. In subsequent years the variation in the overwintering population is found to be dominant.     

A simple shaker table for seismometer calibration

A unique and simple shaker table (shake table or shaking table), designed, constructed, and installed at the Hawaii Institute of Geophysics, has proven to be a valuable aid in testing and calibrating short period seismometers, as well as ocean bottom and ocean sub-bottom seismometer/tilt meter packages. It consists of a platform suspended in a stairwell by a single elastic cord (10 m extended length) driven by GeoSpace HS-10 geophones. Platform motion is monitored by orthogonal reference geophones and tilt meters. The relatively low natural periods of the platform, about 1.9 sec vertical and 6.5 sec horizontal, provide sufficient isolation from local vibrations that calibration can be made near operational amplitudes. Vertical or horizontal driver geophones can be driven by a commercial signal generator or white noise generator, or from magnetic tape output. The table can also be tilted with respect to the drivers to determine tilt tolerances and to calibrate tilt meters. A Hewlett-Packard 3582-A spectrum analyzer, used to analyze both reference and output signals, provides near real-time system cabibration and is an efficient means for investigating parasitic system resonances. The analyzer can also provide a white noise signal source to the driver geophones.Hawaii Institute of Geophysics Contribution 1443.     

Coulometric total carbon dioxide analysis for marine studies: maximizing the performance of an automated gas extraction system and coulometric detector

A global survey of the distribution of dissolved CO₂ taking advantage of sampling opportunities provided by the World Ocean Circulation Experiment: World Hydrographic Program (WOCE-WHP) is being carried out through 1995. Goals include the measurement of oceanic inorganic carbon transport and the development of a data base from which future fossil-fuel CO₂ build-up can be monitored. The analytical method selected for total carbon dioxide (C_T) is gas extraction of acidified seawater with coulometric titration of the acid formed by the resultant carbon dioxide and monoethanolamine. To combine high accuracy and precision (± 1.5 μmol/kg for C_T ≥ 2000 μmol/kg) with a high rate of analysis, we have modified an automated single-parameter system. Following prototype development between 1987 and 1990, an instrument emerged with the acronym Somma standing for single-operator multiparameter metabolic analyzer. Improved functional and operating procedures have integrated electronic calibration, CO₂ gas calibration, and sample analysis with automated pressure, temperature, and conductivity (salinity) sensing into a single convenient transportable package.     

A study of heavy metals in limpets Patella sp. collected along a section of the southeastern turkish mediterranean coast

Limpets collected at three locations along the Turkish Mediterranean coast were analyzed for zinc, copper, cadmium, lead, chromium, nickel, iron, arsenic and strontium. Average metal concentrations in samples taken from busy harbor areas and near sewage outfalls differed little from those collected in primarily agricultural areas. Generally, an inverse relationship of metal concentration with size is seen. The average levels found in these samples are of the same order of magnitude as those in limpets from other regions of the world and thus should serve as a good indication of current background levels in this region.