Phytoplankton diversity in a tropical bay,North Borneo,Malaysia as revealed by light microscopy and Next-Generation Sequencing

Assessments of phytoplankton diversity in Sabah waters, North Borneo, have primarily relied on morphology-based identification, which has inherent biases and can be time-consuming. Next-Generation Sequencing (NGS) technology has been shown to be capable of overcoming several limitations of morphology-based methods. Samples were collected from the Sepanggar Bay over the course of the year 2018 in different monsoon seasons. Morphology-based identification and NGS sequencing of the V8–V9 region of the 18S LSU rDNA were used to investigate the diversity of the phytoplankton community. Microscopy and NGS showed complementary results with more diatom taxa detected by microscopy whereas NGS detected smaller and rarer taxa. The harmful algal genera in the study site comprised of Skeletonema, Margalefidinium, Pyrodinium, Takayama, and Alexandrium as detected by NGS. This study showed that that an integrative approach of both morphological and molecular techniques could provide more comprehensive information about the phytoplankton community as the approach captured quantitative variability as well as the diversity of phytoplankton species.     

Decadal Variability of Subsurface Temperature in the Central North Pacific

Decadal variability of subsurface temperature in the North Pacific has been investigated. Two dominant regions were found; the central subarctic region (CSa) and the north-eastern subtropical region (NESt). In CSa, cooling (warming) of wintertime subsurface temperature corresponds to the large (small) temperature gradient and southward (northward) shift of subsurface temperature front, associated with the increase (decrease) of positive wind stress curl and the southward (northward) shift of curl τ zero line with 2 years delay. It is suggested that the relocation of subtropical-subarctic boundary plays an important role. In NESt, importance of heat flux through the sea surface and heat divergence in the Ekman layer is also discussed. This revised version was published online in July 2006 with corrections to the Cover Date.     

Diamond in metasedimentary crustal rocks from Pohorje,Eastern Alps: a window to deep continental subduction

We report the first finding of diamond and moissanite in metasedimentary crustal rocks of Pohorje Mountains (Slovenia) in the Austroalpine ultrahigh‐pressure (UHP) metamorphic terrane of the Eastern Alps. Microscopic observations and Raman spectroscopy show that diamond occurs in situ as inclusions in garnet, being heterogeneously distributed. Under the optical microscope, diamond‐bearing inclusions are of cuboidal to rounded shape and of pinkish, yellow to brownish colour. The Raman spectra of the investigated diamond show a sharp, first order peak of sp³‐bonded carbon, in most cases centred between 1332 and 1330 cm^?1, with a full width at half maximum between 3 and 5 cm^?1. Several spectra show Raman bands typical for disordered graphitic (sp²‐bonded) carbon. Detailed observations show that diamond occurs either as a monomineralic, single‐crystal inclusion or it is associated with SiC (moissanite), CO₂ and CH₄ in polyphase inclusions_. This rare record of diamond occurring with moissanite as fluid‐inclusion daughter minerals implies the crystallization of diamond and moissanite from a supercritical fluid at reducing conditions. Thermodynamic modelling suggests that diamond‐bearing gneisses attained P–T conditions of ≥3.5 GPa and 800–850 °C, similar to eclogites and garnet peridotites. We argue that diamond formed when carbonaceous sediment underwent UHP metamorphism at mantle depth exceeding 100 km during continental subduction in the Late Cretaceous (c. 95–92 Ma). The finding of diamond confirms UHP metamorphism in the Pohorje Mountains, the most deeply subducted part of Austroalpine units.     

Retardation capacity of altered granitic rock distributed along fractured and faulted zones in the orogenic belt of Japan

There are wide areas of granitic rocks in the Japanese orogenic belt. These granitic bodies inevitably contain fracture and fault systems associated with alteration zones. However, relatively little attention has been given to the possible influence of such widely distributed alteration zones on the migration of radionuclides from any radioactive waste repository that might in future be sited within granitic rock. In particular, the influences of alteration products and micro-fractures, due to chemical sorption and/or physical retardation require further consideration. In order to understand the retardation capacity of the altered deep granitic rocks, detailed geometrical characterization of pores, geochemical analysis, and batch sorption and flow-through experiments have been carried out. Those results show that the altered granite has a large volume of accessible pores, particularly in potassium-feldspar grains, which would influence nuclide retardation more than the accessible porosity in other minerals present, such as biotite. The distribution coefficients, Kd estimated from batch sorption tests and flow-through experiments suggest that altered granite has a high capability to retard the migration of nuclides. The retardation would probably be due to sorption on altered minerals such as sericite and iron hydroxides formed along grain boundaries and in pores created by dissolution, in addition to sorption on primary sorptive minerals. These results provide confidence that even altered and fractured parts of any granitic rock that might be encountered in a site for the disposal of high level radioactive waste may still retard radionuclide migration and thereby help the geosphere to function as a barrier.     

http://www.sciencedirect.com/science/article/pii/S1674987114000917

Important ecological changes of the Earth(oxidization of the atmosphere and the ocean) increase in nutrient supply due to the break-up of the super continent(Rodinia) and the appearance of multi-cellular organisms(macroscopic algae and metazoan) took place in the Ediacaran period,priming the Cambrian explosion.The strong perturbations in carbon cycles in the ocean are recorded as excursions in carbonate and organic carbon isotope ratio(δ~(13)C_(carb) and δ~(13)C_(org)) from the Ediacaran through early Cambrian periods.The Ediacaran-early Cambrian sediment records of δ~(13)C_(carb) and δ~(13)C_(org),obtained from the drill-core samples in Three Gorges in South China,are compared with the results of numerical simulation of a simple one-zone model of the carbon cycle of the ocean,which has two reservoirs(i.e.,dissolved organic carbon(DOC) and dissolved inorganic carbon(DIC).The fluxes from the reservoirs are assumed to be proportional to the mass of the carbon reservoirs.We constructed a model,referred to here as the Best Fit Model(BFM),which reproduce δ~(13)C_(carb) and δ~(13)C_(org) records in the Ediacaran-early Cambrian period noted above.BFM reveals that the Shuram excursion is related to three major changes in the carbon cycle or the global ecological system of the Earth:(1) an increase in the coefficient of remineralization by a factor of ca.100,possibly corresponding to a change in the dominant metabolism from anaerobic respiration to aerobic respiration,(2) an increase of carbon fractionation index from 25‰ to 33‰,possibly corresponding to the change in the primary producer from rock-living cyanobacteria to free-living macro algae,and(3) an increase in the coefficient of the organic carbon burial by a factor of ca.100,possibly corresponding to the onset of a biological pump driven by the flourishing metazoan and zooplankton.The former two changes took place at the start of the Shuram excursion,while the third occurred at the end of the Shuram excursion.The other two excursions are explained by the tentative decrease in primary production due to cold periods,which correspond to the Gaskiers(ca.580 Ma) and Bikonor(ca.542 Ma) glaciations.     

A numerical study of the r-mode instability of rapidly rotating nascent neutron stars

The first results of numerical analysis of classical r-modes of rapidly rotating compressible stellar models are reported. The full set of linear perturbation equations of rotating stars in Newtonian gravity is solved numerically without the slow rotation approximation. A critical curve of gravitational wave emission induced instability, which restricts the rotational frequencies of hot young neutron stars, is obtained. Taking the standard cooling mechanisms of neutron stars into account, we also show the 'evolutionary curves' along which neutron stars are supposed to evolve as cooling and spinning down proceed. Rotational frequencies of 1.4-M_⊙ stars suffering from this instability decrease to around 100 Hz when the standard cooling mechanism of neutron stars is employed. This result confirms the results of other authors, who adopted the slow rotation approximation.     

Simulations of deep pencil-beam redshift surveys

We create mock pencil-beam redshift surveys from very large cosmological N -body simulations of two cold dark matter (CDM) cosmogonies, an Einstein–de Sitter model ( τ CDM) and a flat model with Ω₀=0.3 and a cosmological constant (ΛCDM). We use these to assess the significance of the apparent periodicity discovered by Broadhurst et al. Simulation particles are tagged as 'galaxies' so as to reproduce observed present-day correlations. They are then identified along the past light-cones of hypothetical observers to create mock catalogues with the geometry and the distance distribution of the Broadhurst et al. data. We produce 1936 (2625) quasi-independent catalogues from our τ CDM (ΛCDM) simulation. A couple of large clumps in a catalogue can produce a high peak at low wavenumbers in the corresponding one-dimensional power spectrum, without any apparent large-scale periodicity in the original redshift histogram. Although the simulated redshift histograms frequently display regularly spaced clumps, the spacing of these clumps varies between catalogues and there is no 'preferred' period over our many realizations. We find only a 0.72 (0.49) per cent chance that the highest peak in the power spectrum of a τ CDM (ΛCDM) catalogue has a peak-to-noise ratio higher than that in the Broadhurst et al. data. None of the simulated catalogues with such high peaks shows coherently spaced clumps with a significance as high as that of the real data. We conclude that in CDM universes, the regularity on a scale of ∼130  h ⁻¹ Mpc observed by Broadhurst et al. has a priori probability well below 10⁻³.     

Primary melt from Sannome-gata volcano,NE Japan arc: constraints on generation conditions of rear-arc magmas

The conditions under which rear-arc magmas are generated were estimated using primary basalts from the Sannome-gata volcano, located in the rear of the NE Japan arc. Scoriae from the volcano occur with abundant crustal and mantle xenoliths, suggesting that the magma ascended rapidly from the upper mantle. The scoriae show significant variations in their whole-rock compositions (7.9–11.1 wt% MgO). High-MgO scoriae (MgO > ~9.5 wt%) have mostly homogeneous ⁸⁷Sr/⁸⁶Sr ratios (0.70318–0.70320), whereas low-MgO scoriae (MgO < ~9 wt%) have higher ⁸⁷Sr/⁸⁶Sr ratios (>0.70327); ratios tend to increase with decreasing MgO content. The high-MgO scoriae are aphyric, containing ~5 vol% olivine microphenocrysts with Mg# [100 × Mg/(Mg + Fe²⁺)] of up to 90. In contrast, the low-MgO scoriae have crustal xenocrysts of plagioclase, alkali feldspar, and quartz, and the mineralogic modes correlate negatively with whole-rock MgO content. On the basis of these observations, it is inferred that the high-MgO scoriae represent primary or near-primary melts, while the low-MgO scoriae underwent considerable interaction with the crust. Using thermodynamic analysis of the observed petrological features of the high-MgO scoriae, the eruption temperature of the magmas was constrained to 1,160–1,220 °C. Given that the source mantle was depleted MORB-source mantle, the primary magma was plausibly generated by ~7 % melting of a garnet-bearing spinel peridotite; taking this into consideration, and considering the constraints of multi-component thermodynamics, we estimated that the primary Sannome-gata magma was generated in the source mantle with 0.5–0.6 wt% H₂O at 1,220–1,230 °C and at ~1.8 GPa, and that the H₂O content of the primary magma was 6–7 wt%. The rear-arc Sannome-gata magma was generated by a lower degree of melting of the mantle at greater depths and lower temperatures than the frontal-arc magma from the Iwate volcano, which was also estimated to be generated by ~15 % melting of the source mantle with 0.6–0.7 wt% H₂O at ~1,250 °C and at ~1.3 GPa.