Application of the luciferase cell culture bioassay for the detection of refined petroleum products

A luciferase cell culture-based bioassay, developed to detect 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)-like activity of halo-genated and polycyclic aromatic hydrocarbons, was optimized to detect refined petroleum products and to determine their relative inducing potency. Quality control standards from 32 refined products (gasolines and diesels, jet fuels, lubricating oils, fuel oils and weathered products) and three commercial products were evaluated. Induction equivalents (I-EQs) were determined by direct comparison of the EC50 and EC20 values (based on the median and 20% TCDD maximal response, respectively) from dose-response curves for each product to those obtained with TCDD. Most petroleum products were active in the luciferase bioassay, with those products composed of fractions produced later in the distillation process (i.e. fuel oils) inducing higher levels. Additionally, weathering of products reduced their induction potency. Based on the high I-EQ estimates of many products, biological effects associated with exposure may have been previously underestimated using other diagnostic methods.     

Development of a Continental Volcanic Field: Petrogenesis of Pre-caldera Intermediate and Silicic Rocks and Origin of the Bandelier Magmas, Jemez Mountains (New Mexico, USA)

The Miocene–Quaternary Jemez Mountains volcanic field(JMVF) is the site of the Valles caldera and associated BandelierTuff. Caldera formation was preceded by > 10 Myr of volcanismdominated by intermediate composition rocks (57–70% SiO₂)that contain components derived from the lithospheric mantleand Precambrian crust. Simple mixing between crust-dominatedsilicic melts and mantle-dominated mafic magmas, fractionalcrystallization, and assimilation accompanied by fractionalcrystallization are the principal mechanisms involved in theproduction of these intermediate lavas. A variety of isotopicallydistinct crustal sources were involved in magmatism between13 and 6 Ma, but only one type (or two very similar types) ofcrust between 6 and 2 Ma. This long history constitutes a recordof accommodation of mantle-derived magma in the crust by meltingof country rock. The post-2 Ma Bandelier Tuff and associatedrhyolites were, in contrast, generated by melting of hybridizedcrust in the form of buried, warm intrusive rocks associatedwith pre-6 Ma activity. Major shifts in the location, styleand geochemical character of magmatism in the JMVF occur withina few million years after volcanic maxima and may correspondto pooling of magma at a new location in the crust followingsolidification of earlier magma chambers that acted as trapsfor basaltic replenishment. KEY WORDS: crustal anatexis; fractional crystallization; Jemez Mountain Volcanic Field; Valles Caldera; radiogenic isotopes; trace elements     

Reddening of dune sands—evidence from southeast India

Thin section, SEM, and TEM analyses have indicated that the red ‘teri’ sands of southeast India have formed from weathering in situ of coastal dune sands. The data does not support a detrital origin for the red sands. C¹⁴ dates indicate that dune deposition and weathering, to a maximum depth of 10 m, leading to the formation of a hematite, koalinite and illite rich matrix has taken place rapidly over the past 25,000 years. It is postulated that garnet was a major source of hematite (ferric oxide).     

The magmatic evolution of the Seiland province,and Caledonian plate boundaries in northern Norway

The synorogenic intrusive activity of the eastern part of the Seiland province evolved from tholeiitic basalt low in K and Ti, through high-K calc-alkaline magmas and possible transitional basalt, to alkaline olivine basalt and picrite; finally, highly differentiated alkaline magmas and carbonatites were emplaced. For intrusive rocks with equivalent SiO₂ contents, K₂O, K₂O + Na₂O and K₂O/Na₂O increased with time, and the degree of iron enrichment in basaltic suites dimished. The western part of the province shows no equivalent evolution, tholeiitic magmas being emplaced at the same time as calc-alkaline magmas to the east.The magmatism is believed to have stemmed from a diapiric complex established in the mantle above a Benioff zone dipping to the east beneath the deforming Andean-type margin of the Baltic plate. Tectonic shortening of the continental edge and rearward movement of the underthrust plate relative to the asthenosphere resulted in migration of the plate junction, steepening of the seismic zone, and increasing depth to the magmagenetic region.     

Organic versus inorganic trace metal complexes in sulfidic marine waters—some speculative calculations based on available stability constants

A theoretical model has been developed in order to test the hypothesis that simple organic acids are the chief agents of trace metal solubility in H₂S-rich marine waters. The model utilizes stability constant given by Sillen and Martell (1964, 1971) and assumes that the free cation activity of each metal is controlled by simple solubility products. Typical values of pH, pS and Eh are employed in the calculations. The results indicate that free amino acids and hydrocarboxylic acids probably are not effective but that bisulfide and polysulfide complexes may be the chief agents of trace metal solubility. To the extent that it is present, the effect of dissolved organic matter on trace metal solubility probably resides in highly polymerized substances (e.g. humic acids).     

The Norwegian–Barents–Svalbard (NBS) continental margin: Introducing a natural laboratory of mass wasting, hydrates, and ascent of sediment, pore water, and methane

Side-scan sonar mapping and ground-truthing of the Norwegian–Barents–Svalbard continental margin shed new light on shelf glaciation, mass wasting, hydrates, and features like the Håkon Mosby mud volcano (HMMV), reflecting upward mobility of gas, pore fluids, and sediments. Detailed HMMV examination revealed thermal gradients to 10°/m, bottom-water CH₄ and temperature anomalies, H₂S- and CH₄-based chemosynthetic ecosystems, and subbottom methane hydrate (to 25%). Seismic and chemical data suggest HMMV origins at 2–3?km depth within the 6-km-thick depocenter. The HMMV and mound fields bordering the Bjørnøyrenna slide valley and pockmarks bordering the Storegga slide may all have formed in response to sediment failure.     

Currents and sediment transport in the Mississippi Canyon and effects of Hurricane Georges

The temporal variability in currents, temperature, and particulate matter concentration were measured in the Mississippi Canyon axis where the thalweg was 300 m deep from May–July and August–November 1998 using current meters, thermographs, a light-scattering sensor, and sediment traps. Canyon sediments were sampled by coring and observed using an ROV video camera. Currents in the upper Mississippi Canyon generally oscillated up/down canyon with diurnal periodicity and were bottom-intensified. Mean current speed at 3.5 mab was approximately 8 cm s^?1 during both deployments, reaching maximum speeds of over 50 cm s^?1 under normal conditions. Based on current velocities, critical bed shear stress for resuspension of canyon-floor sediments was exceeded about 30% of the time during both deployments. In late September, Hurricane Georges passed 150 km NE of the study site, significantly intensifying current velocities, bed shear stress, resuspension, trap fluxes and temperature fluctuations. As the hurricane passed, maximum current speed reached 68 cm^?s and temperature decreased ～7 °C in less than two hours. Critical bed shear stress for sediment resuspension was exceeded approximately 50% of the time during the five days of hurricane influence. Further evidence for sediment resuspension was the five-fold (and perhaps 70–130 fold) increase in trap fluxes and compositional similarities between canyon surface sediment and material collected by traps.     

Representation of tropical subseasonal variability of precipitation in global reanalyses

Tropical subseasonal variability of precipitation from five global reanalyses (RAs) is evaluated against Global Precipitation Climatology Project (GPCP) and Tropical Rainfall Measuring Mission (TRMM) observations. The RAs include the three generations of global RAs from the National Center for Environmental Prediction (NCEP), and two other RAs from the European Centre for Medium-Range Weather Forecasts (ECMWF) and the National Aeronautics and Space Administration/Goddard Space Flight Center (NASA/GSFC). The analysis includes comparisons of the seasonal means and subseasonal variances of precipitation, and probability densities of rain intensity in selected areas. In addition, the space–time power spectrum was computed to examine the tropical Madden-Julian Oscillation (MJO) and convectively coupled equatorial waves (CCEWs). The modern RAs show significant improvement in their representation of the mean state and subseasonal variability of precipitation when compared to the two older NCEP RAs: patterns of the seasonal mean state and the amplitude of subseasonal variability are more realistic in the modern RAs. However, the probability density of rain intensity in the modern RAs show discrepancies from observations that are similar to what the old RAs have. The modern RAs show higher coherence of CCEWs with observed variability and more realistic eastward propagation of the MJO precipitation. The modern RAs, however, exhibit common systematic deficiencies including: (1) variability of the CCEWs that tends to be either too weak or too strong, (2) limited coherence with observations for waves other than the MJO, and (3) a systematic phase lead or lag for the higher-frequency waves.     

Cloud computing and virtualization within the regional climate model and evaluation system

The Regional Climate Model Evaluation System (RCMES) facilitates the rapid, flexible inclusion of NASA observations into climate model evaluations. RCMES provides two fundamental components. A database (RCMED) is a scalable point-oriented cloud database used to elastically store remote sensing observations and to make them available using a space time query interface. The analysis toolkit (RCMET) is a Python-based toolkit that can be delivered as a cloud virtual machine, or as an installer package deployed using Python Buildout to users in order to allow for temporal and spatial regridding, metrics calculation (RMSE, bias, PDFs, etc.) and end-user visualization. RCMET is available to users in an “offline”, lone scientist mode based on a virtual machine dynamically constructed with model outputs and observations to evaluate; or on an institution’s computational cluster seated close to the observations and model outputs. We have leveraged RCMES within the content of the Coordinated Regional Downscaling Experiment (CORDEX) project, working with the University of Cape Town and other institutions to compare the model output to NASA remote sensing data; in addition we are also working with the North American Regional Climate Change Assessment Program (NARCCAP). In this paper we explain the contribution of cloud computing to RCMES’s specifically describing studies of various cloud databases we evaluated for RCMED, and virtualization toolkits for RCMET, and their potential strengths in delivering user-created dynamic regional climate model evaluation virtual machines for our users.     

Chemistry of the heavily urbanized Bagmati River system in Kathmandu Valley, Nepal: export of organic matter, nutrients, major ions, silica, and metals

Water quality in less-developed countries is often subject to substantial degradation, but is rarely studied in a systematic way. The concentration and flux of major ions, carbon, nitrogen, silicon, and trace metals in the heavily urbanized Bagmati River within Kathmandu Valley, Nepal, are reported. The concentrations of all chemical species increased with distance downstream with the exceptions of protons and nitrate, and showed strong relationships with population density adjacent to the river. Total dissolved nitrogen (TDN), dominated by NH₄, was found in high concentrations along the Bagmati drainage system. The export of dissolved organic carbon (DOC) and TDN were 23 and 33 tons km^?2 year^?1, respectively, at the outlet point of the Kathmandu Valley, much higher than in relatively undeveloped watersheds. The cationic and silica fluxes were 106 and 18 tons km^?2 year^?1 at the outlet of the Bagmati within Kathmandu Valley, and 36 and 32 tons km^?2 year^?1 from the relatively pristine headwater area. The difference between headwaters and the urban site suggests that the apparent weathering flux is three times higher than the actual weathering rate in the heavily urbanized Bagmati basin. Fluxes of cations and silica are above the world average, as well as fluxes from densely populated North American and European watersheds. End-member composition of anthropogenic sources like sewage or agricultural runoff is needed to understand the drivers of this high rate of apparent weathering.