Fine-scale Microbial Communities Associated with Manganese Nodules in Deep-sea Sediment of the Korea Deep Ocean Study Area in the Northeast Equatorial Pacific

Despite its potential significance for industrial utilization, any activities associated with the mining of manganese (Mn) nodules might have substantial impacts on benthic ecosystems. Because microorganisms respond quickly to changing environmental conditions, a study of microbial communities provides a relevant proxy to assess possible changes in benthic ecosystems associated with mining activities. We investigated fine-scale microbial community composition and diversity inside and on the surface of Mn nodules and in nearby deep-sea sediments in the Korea Deep Ocean Study (KODOS) area located in the Clarion-Clipperton Fracture Zone (CCFZ) of the northeast equatorial Pacific. Although microbial cell density was lower within nodules (3.21 × 10⁶ cells g^-1) than in sediment (2.14 × 10⁸ cells g^-1), nodules provided a unique habitat for microorganisms. Manganese-oxidizing bacteria including Hyphomicrobium and Aurantimonas in Alphaproteobacteria and Marinobacter in Gammaproteobacteria were abundant in nodules, which implied that these bacteria play a significant role in nodule formation. In contrast, Idiomarina in Gammaproteobacteria and Erythrobacter and Sulfitobacter in Alphaproteobacteria were abundant in sediments. Meanwhile, Thaumarchaeota, a phylum that consists of ammonia-oxidizing chemolithoautotrophs, were the predominant archaeal group both in nodules and sediment. Overall, microbial communities in Mn nodules were unique compared to those observed in sediments. Furthermore, the phylogenetic composition of microorganisms in the KODOS area was distinguishable from that in the nodule provinces claimed by China and Germany in the CCFZ and nodule fields in the central South Pacific Gyre, respectively.     

Morphological and genetic comparison of two strains of a Prorocentrum species isolated from Zhejiang coastal water of China and Masan Bay of Korea

In this paper, we examined the detailed morphology of two strains of Prorocentrum isolated from the coastal waters of Zhejiang (Wenling area), China, and Masan Bay of Korea. A taxonomic comparison was made among strains on the basis of morphological and molecular data. The cellular dimensions of the Chinese Wenling strain (LAMB090508) and Korean strain (PDKS0206) were similar and the cells of both strains were of asymmetric and elongated shape. The posterior end of most cells was rounded. Megacytic zones of aged cells were broader with dense tiny knobs. The roundish nucleus was located in the posterior part of the cell. A few irregular shaped chloroplasts were distributed within the cell. The nucleotide similarity of the two strains, determined from the 5.8S rDNA-ITS sequences, was 99.83%. The comparative results of morphology and molecular analysis suggest that both strains isolated from China and Korea were the identical species, Prorocentrum donghaiense Lu.     

Experimental Evaluation of Leaching Effects on the Compressibility of Marine Clay and its Strain Rate Dependency

This study investigated how leaching affects compressibility behavior of marine clay and its strain rate dependency based on laboratory tests using three pairs of specimens. Each pair of specimens consisted of leached and unleached samples with identical geotechnical properties except soil salinity. The behavior characteristics of the leached and unleached specimens were evaluated using several series of constant rate-of-strain (CRS) tests with differing strain rates. The results revealed that the compressibility of leached clay increased as its salinity decreased. However, void ratio, Atterberg limits, and preconsolidation pressure in leached samples were lower than those in unleached clay. The increased compressibility and decreased preconsolidation pressure may be induced from a weakening of the interparticle bonds in the leached soil skeleton. The CRS test results with differing strain rates revealed that higher strain rates corresponded with higher levels of effective stress and higher apparent preconsolidation pressure in both leached and unleached clays.     

TBT toxicity on the marine microalga Nannochloropsis oculata

Commercial antifouling formulations containing TBT are the major source of organotin contamination in coastal waters. In view of the persisting TBT residues (13 ng Sn l⁻¹) in the coastal waters of South Korea, an attempt has been made to evaluate the growth response and biochemical composition of laboratory-cultured Nannochloropsis oculata to TBT toxicity. It is evident that the persisting concentration level of TBT is high enough to cause adverse effect on the microalgal species. The EC₅₀ (24 h) was found to be at 0.89 nM level of TBT for this marine eustigmatophyte N. oculata. Photosynthetic pigment content was significantly affected. At elevated TBT concentrations of 1.0 nM, especially pronounced changes in biochemical composition was found. TBT tolerance of N. oculata and its growth as well as biochemical responses are discussed.     

Climate change in Turkey for the last half century

Climate change and its urban-induced bias in selected Turkish cities is studied with a quality controlled temperature and precipitation data of Turkish stations in the period of 1950–2004. These stations are classified into two groups according to their populations; S1, including rural and suburban stations and S2, including large urban stations. Moving average signals, 365-day, and their digital low pass filtered versions are produced to eliminate the short term fluctuations and examine the possible trends or anomalies in climate data. Furthermore, ‘relative difference’ signals are introduced and applied to temperature and precipitation series to observe the actual local changes in the climate data independent from large-scale effects. Mann–Kendall test statistics are calculated for maximum, minimum, mean temperature and precipitation series and plotted on maps to determine any spatial trend patterns. Signal analysis show a cool period extending from early 1960s till 1993, generally with the lowest temperature values on 1992–1993 owing to the eruption of Mount Pinatubo. A last decade significant warming trend is observed in both of the series, S1 and S2, leading to 2000–2002 temperatures to be recorded as maximums in record history. The variability of urban precipitation series is generally larger than the rural ones, suggesting that urban stations can experience more frequent and severe droughts and floods. Though not significant, an increase in the urban precipitation compared to the rural one is also found. Spatial analysis resulted in significant warming in southern and southeastern parts of the country. Particularly, minimum temperature series show significant warming in almost all of the regions indicating the effect of urbanization. Significant decreases of precipitation amounts in the western parts of Turkey, such as Aegean and Trachea regions, are found. On the other hand, some Turkish northern stations show increases in precipitation of which some are significant.     

A dissection of the surface temperature biases in the Community Earth System Model

Based upon the climate feedback-responses analysis method, a quantitative attribution analysis is conducted for the annual-mean surface temperature biases in the Community Earth System Model version 1 (CESM1). Surface temperature biases are decomposed into partial temperature biases associated with model biases in albedo, water vapor, cloud, sensible/latent heat flux, surface dynamics, and atmospheric dynamics. A globally-averaged cold bias of ?1.22 K in CESM1 is largely attributable to albedo bias that accounts for approximately ?0.80 K. Over land, albedo bias contributes ?1.20 K to the averaged cold bias of ?1.45 K. The cold bias over ocean, on the other hand, results from multiple factors including albedo, cloud, oceanic dynamics, and atmospheric dynamics. Bias in the model representation of oceanic dynamics is the primary cause of cold (warm) biases in the Northern (Southern) Hemisphere oceans while surface latent heat flux over oceans always acts to compensate for the overall temperature biases. Albedo bias resulted from the model’s simulation of snow cover and sea ice is the main contributor to temperature biases over high-latitude lands and the Arctic and Antarctic region. Longwave effect of water vapor is responsible for an overall warm (cold) bias in the subtropics (tropics) due to an overestimate (underestimate) of specific humidity in the region. Cloud forcing of temperature biases exhibits large regional variations and the model bias in the simulated ocean mixed layer depth is a key contributor to the partial sea surface temperature biases associated with oceanic dynamics. On a global scale, biases in the model representation of radiative processes account more for surface temperature biases compared to non-radiative, dynamical processes.     

Molecular expression of opsin gene in growing juvenile mackerel (<Emphasis Type="Italic">Scomber japonicus</Emphasis> Houttuyn)

Fish have developed color vision that is closely adapted to their photic environments, where both spectral sensitivity and the number of visual opsins are influenced. The mackerel used in this study is one of the most important fishery stocks in Korea. The opsin gene of the mackerel juveniles after 20 days in hatching was isolated and characterized based on the molecular study of visual photoreceptor. The full-length mackerel opsin gene was obtained by PCR amplification of genomic DNA, as well as cDNA synthesis. Sequence analysis of the opsin gene showed that it contained a 1,080 bp open reading frame encoding 360 amino acids. Based on Schiff’s base formation (S114, K119), glycosylation (E3, F37) and palmitoylation (S281, 282), the deduced amino acid sequence had a typical rod opsin. The mackerel and Gempylus serpens showed 73.7% DNA homology on opsin gene, which was higher than any other of investigated species. In the analysis of phylogenetic relationship, the genetic placement of the mackerel is closer to that of Scombroidei than Labroidei, with supporting somewhat strong bootstrap value. In the analysis of Northern and RT-PCR, the probed products were observed only in rapidly growing juveniles. These findings indicate that in mackerel opsin mRNA expression can be detected in day-20 hatching larvae. It may play an important role in stimulating growth hormone.     

Yeosu dinosaur track sites of Korea: The youngest dinosaur track records in Asia

Eighty two dinosaur trackways were newly discovered in Upper Cretaceous lacustrine deposits on islands in the vicinity of Yeosu, Korea. Most dinosaur tracks occur in marginal lake deposits with polygonal desiccation cracks. The dinosaur tracks at the Yeosu site include 65 ornithopod trackways, 16 theropod trackways and one sauropod trackway. The prevalence of ornithopod tracks and the limited occurrence of sauropod tracks at the Yeosu site evidently reflect decreased sauropod diversity in the Upper Cretaceous. All ornithopod trackways represent bipeds, and most of the ornithopod tracks are similar to Caririchnium from other sites of the Korean peninsula. All fossil wood specimens collected in the study area represent conifers (three species of cupressaceous and two species of taxodiaceous conifers, and a new species) except for one, which is a discotyledon. It is thus inferred that the southwestern part of the Korean Peninsula was primarily covered with mesic forests with taxodiaceous trees during the Late Cretaceous. The K–Ar age of the Yeosu tracksite is determined as 81–65 Ma (Camapnian to Maastrichtian). It indicates that the Yeosu track site contains the last records of dinosaurs living in Asia. Consequently, semi-arid palaeoclimatic conditions, together with a large lake as a persistent water source and rich vegetation of gymnosperm trees as food, resulted in the preservation of abundant dinosaur tracks in the Upper Cretaceous on the Korean Peninsula.