Molecular markers for identifying a new selected variety of Pacific white shrimp Litopenaeus vannamei

Selective breeding of the Pacific white shrimp Litopenaeus vannamei during the last decade has produced new varieties exhibiting high growth rates and disease resistance.However,the identification of new varieties of shrimps from their phenotypic characters is difficult.This study introduces a new approach for identifying varieties of shrimps using molecular markers of microsatellites and mitochondrial control region sequences.The method was employed to identify a new selected variety,Kehai No.1(KH-1),from three representative stocks(control group):Zhengda;Tongwei;and a stock collected from Fujian Province,which is now cultured in mainland China.By pooled genotyping of KH-1 and the control group,five microsatellites showing differences between KH-1 and the control group were screened out.Individual genotyping data confirmed the results from pooled genotyping.The genotyping data for the five microsatellites were applied to the assignment analysis of the KH-1 group and the control group using the partial Bayesian assignment method in GENECLASS2.By sequencing the mitochondrial control regions of individuals from the KH-1 and control group,four haplotypes were observed in the KH-1 group,whereas14 haplotypes were obtained in the control group.By combining the microsatellite assignment analysis with mitochondrial control region analysis,the average accuracy of identification of individuals in the KH-1group and control group reached 89%.The five selected microsatellite loci and mitochondrial control region sequences were highly polymorphic and could be used to distinguish new selected varieties of L.vannamei from other populations cultured in China.     

Survey of cyanomyovirus abundance in Shantou coastal waters by g20

To understand the genetic diversity and population changes in cyanophages in the coastal waters of Shantou,northeast South China Sea,we used the capsid assembly protein gene g 20 as a marker of the abundance and phylogeny of natural cyanomyovirus communities. The abundance of total viruses,heterotrophic bacteria,and picophytoplankton in the coastal waters was monitored with flow cytometry. Hydrological parameters(NO ˉ 3,NO ˉ 2,NH 3,soluble reactive phosphorus,total dissolved nitrogen,total dissolved phosphorus,dissolved oxygen,chemical oxygen demand,temperature,salinity,and chlorophyll a concentration) and microbial abundance(total viruses,total bacteria,P rochlorococcus,Synechococcus,and eukaryotes) were measured in the upper and lower layers at four sampling sites in the research area. In the direct viral counts,cyanomyoviruses accounted for 1.92% to 10% of the total viral community. A phylogenetic analysis showed that the g 20 sequences in the Shantou coastal waters were very diverse,distributed in eight distinct operational taxonomic units,including the newly formed Cluster W. The g 20 gene copies inferred from real time PCR assay indicated that cyanomyoviruses were correlated significantly with the heterotrophic bacteria numbers and the nitrate and chlorophyll a concentrations. These results suggest that cyanomyoviruses are ubiquitous and are an abundant component of the virioplankton in Shantou coastal waters.     

时空过程网络可视化模拟与分析服务——以溃坝洪水为例

洪水溃坝等复杂灾害现象的时空过程模拟分析,是当前国际地理信息科学热点研究方向之一。随着网络的普及化,公众对GIS时空分析模型的网络实时集成和可视化分析提出了迫切的需求。本文以溃坝洪水为例开展了时空过程网络可视化模拟与分析服务研究,利用Web GL、HTML5、Ajax、Web Service、GPU并行计算等技术手段,通过探讨溃坝洪水时空模型计算优化、网络三维可视化模拟与动态交互分析等关键技术,研发了原型系统并进行应用实验。实验结果表明,本文研究成果有助于实现时空过程信息的网络发布,在线影响分析及动态可视化服务,可为分布式网络环境下溃坝洪水等时空过程信息管理和应急决策提供科学依据和技术支持。     

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Phase evolution of Holocene paleoenvironmental changes in the southern Yellow Sea: Benthic foraminiferal evidence from core C02

Assemblages of benthic foraminifera in a sediment core (C02) near the western margin of the southern Yellow Sea Mud were studied to decipher the phase evolution of Holocene paleoenvironmental changes associated with the Holocene marine transgression. It appears that during the early Holocene (11.2–10.1 kyr BP), the faunal was dominated by low salinity and shallow water species Cribrononion subincertum, Buccella frigida and Ammonia beccarii, reflecting a near coast depositional environment. A rapid increase of the relative abundance of Ammonia compressiuscula between 10.1–9.3 kyr BP indicates that the sea level rose rapidly during that time period. From 9.3–7.7 kyr BP, the benthic foraminiferal assemblage was dominated by high percentage of A. compressiscula, suggesting that the sea level was relatively stable. An obvious transition of benthic foraminifera, from the A. compressiuscula-dominated assemblage to an Ammonia ketienziensis-dominated assemblage, occurred between 7.7–6.2 kyr BP, possibly corresponding to a second sea level rapid rise period in the Yellow Sea during the Holocene. This transition may correspond to the gradually strengthened Yellow Sea warm current (YSWC) and finally is established the modern-type circulation in the Yellow Sea. It may also mark the formation of the Yellow Sea cold bottom water (YSCBW) during that period. Since then, the benthic foraminiferal assemblage based on core C02 was dominated by typical YSCBW species, A. ketienziensis, Astrononion italicum and Hanzawaia nipponica, at 6.2–4 kyr BP. A non-deposition period occurred since ～4 kyr BP, which possibly related to the hydrology changes caused by the East Asia monsoon. The two obvious benthic foraminiferal transitions recorded in core C02 during the early and middle Holocene provide evidence that the Yellow Sea has undergone a two-phase rapid sea level rise during the Holocene marine transgression.     

Construction of bacterial artificial chromosome libraries for Zhikong Scallop <Emphasis Type="Italic">Chlamys farreri</Emphasis>

Two Large-insert genomic bacterial artificial chromosome （BAC） libraries of Zhikong scallop Chlamys farreri were constructed to promote our genetic and genomic research. High-quality megabase-sized DNA was isolated from the adductor muscle of the scallop and partially digested by BamH I and Mbo I, respectively. The BamH I library consisted of 53 760 clones while the Mbo I library consisted of 7 680clones. Approximately 96 % of the clones in BamH I library contained nuclear DNA inserts in average size of 100 kb, providing a coverage of 5.3 haploid genome equivalents. Similarly, the Mbo I library with an average insert of 145 kb and no insert-empty clones, thus providing a genome coverage of 1.1 haploid genome equivalents.     

鄂尔多斯盆地西部上二叠统石千峰组沉积环境地球化学表征

在沉积学、生物和地球物理测井相标志研究基础上,运用锶钡质量分数比值和锶钡散点图法,锶钙和钍铀比值法、沉积磷酸盐法、碳氧同位素和氧化-还原电位法等地球化学方法,根据微量元素和稳定同位素的特征对鄂尔多斯盆地西部上二叠统石千峰组沉积时的古盐度和氧化还原条件进行了详细分析.结果表明:石千峰组为淡水沉积,属干旱、炎热、氧化的陆相湖泊环境.其结论与石千峰组的棕红、紫红和紫灰色陆源碎屑岩沉积特别与红色沉积层为特征是相一致的.     

福建省地壳形变观测网络建设

介绍了福建省地壳形变观测网络的建设。福建省地壳形变观测网络，以GPS观测技术为主，结合精密水准、精密重力和流动地磁测量，将3者重合到GPS观测基准站上获取观测信息，初步构成一个时空相结合，点线面与长中短兼顾的高精度、高时空分辨率的地壳形变观测网络。该网络可动态监测福建省东南沿海地区地壳运动变化，为地震预测预报提供背景信息，将取得显著的社会效益和经济效益。     

Climate warming-induced upward shift of Moso bamboo population on Tianmu Mountain, China

Although increasing attention has been paid to upward shift of plant species in altitude as a response to global warming, research on this phenomenon at low altitudinal and low latitudinal zones did not receive enough attention. In this study, an investigation was carried out to test the relationship between the upward spread of Moso bamboo (Phyllostachys pubescens) along altitudinal gradient and the increasing air temperature over the past decade within the Tianmu Mountain region, situated in southeastern China. Results showed that the peak elevation of Moso bamboo population establishment rose by an average of 9.8 m (±2.7 m) during the past decade and significant correlation existed with mean annual temperature (P < 0.0001, n = 339) but not with annual precipitation (P = 0.7, n = 339), indicating that the upward shift of Moso bamboo along altitudinal gradients was driven primarily by warming temperatures. This upward shift could potentially reduce biodiversity by altering the species composition of the ecosystem. However, there is also the potential for increased carbon sequestration capacity of local forest systems, which would produce an additional carbon sink to combat rising atmospheric CO₂ concentrations and future global warming.     

Seismogenic Structures of the 2006 ML4.0 Dangan Island Earthquake Offshore Hong Kong

The northern margin of the South China Sea, as a typical extensional continental margin, has relatively strong intraplate seismicity. Compared with the active zones of Nanao Island, Yangjiang, and Heyuan, seismicity in the Pearl River Estuary is relatively low. However, a ML4.0 earthquake in 2006 occurred near Dangan Island(DI) offshore Hong Kong, and this site was adjacent to the source of the historical M5.8 earthquake in 1874. To reveal the seismogenic mechanism of intraplate earthquakes in DI, we systematically analyzed the structural characteristics in the source area of the 2006 DI earthquake using integrated 24-channel seismic profiles, onshore–offshore wide-angle seismic tomography, and natural earthquake parameters. We ascertained the locations of NW-and NE-trending faults in the DI sea and found that the NE-trending DI fault mainly dipped southeast at a high angle and cut through the crust with an obvious low-velocity anomaly. The NW-trending fault dipped southwest with a similar high angle. The 2006 DI earthquake was adjacent to the intersection of the NE-and NW-trending faults, which suggested that the intersection of the two faults with different strikes could provide a favorable condition for the generation and triggering of intraplate earthquakes. Crustal velocity model showed that the high-velocity anomaly was imaged in the west of DI, but a distinct entity with low-velocity anomaly in the upper crust and high-velocity anomaly in the lower crust was found in the south of DI. Both the 1874 and 2006 DI earthquakes occurred along the edge of the distinct entity. Two vertical cross-sections nearly perpendicular to the strikes of the intersecting faults revealed good spatial correlations between the 2006 DI earthquake and the low to high speed transition in the distinct entity. This result indicated that the transitional zone might be a weakly structural body that can store strain energy and release it as a brittle failure, resulting in an earthquake-prone area.