Why Web GIS May Not Be Enough: A Case Study with the Virtual Research Vessel

During several decades of investigation, the East Pacific Rise seafloor-spreading center at 9°-10°N has been explored by marine geologists, geophysicists, chemists, and biologists, and has emerged as one of the best studied sections of the global midocean ridge. It is an example of a region for which there is now a great wealth of observational data, results, and data-driven theoretical studies. However, these have yet to be fully utilized, either by research scientists or educators. While the situation is improving, a large amount of data, results, and related theoretical models still exist either in an inert, noninteractive form (e.g., journal publications) or as unlinked and currently incompatible computer data or algorithms. Presented here is the prototype of a computational environment and toolset, called the Virtual Research Vessel, to improve the situation by providing marine scientists and educators with simultaneous access to data, maps, and numerical models. While infrastructure is desired and needed for ready access to data and the resulting maps via web GIS in order to link disparate data sets (data to data), it is argued that data must also be linked to models for better exploration of new relations between observables, refinement of numerical simulations, and the quantitative evaluation of scientific hypotheses. For widespread data access, web GIS is therefore only a preliminary step rather than a final solution, and the ongoing implementation of the Virtual Research Vessel (scheduled for final completion in 2004-2005) is a case study for the midocean ridge community to test the effectiveness of moving beyond the data-to-data mode towards data-to-models and data-to-interpretation.     

Evaluation of lead movement from the abiotic to biotic at a small-arms firing range

An investigation to characterize the extent and speciation of lead contamination in water, soil, and surrounding biota was conducted at a small-arms firing and skeet range in West Point, New York. Specifically, lead concentrations were examined in sediment, soil, water, plants, fish and invertebrates. There is an elevated concentration of lead in the soil and sediment up to 11,000 g/g and 340 g/g and also evidence of bioconcentration of the lead by the surrounding biota. Earthworms had up to 90% higher concentrations of lead while tadpoles showed 20% higher concentrations compared with their controls. Lead uptake by indigenous plants gave varying results. Two species bioconcentrated lead 20 and 55 times greater than the control plants. These differences were significant (P <0.05 level) when tested by the students t test. Further studies show that the total leachable lead was highest in the invertebrates and vertebrates but not in the plants.     

Using Resin‐Based 3D Printing to Build Geometrically Accurate Proxies of Porous Sedimentary Rocks

Three‐dimensional (3D) printing is capable of transforming intricate digital models into tangible objects, allowing geoscientists to replicate the geometry of 3D pore networks of sedimentary rocks. We provide a refined method for building scalable pore‐network models (“proxies”) using stereolithography 3D printing that can be used in repeated flow experiments (e.g., core flooding, permeametry, porosimetry). Typically, this workflow involves two steps, model design and 3D printing. In this study, we explore how the addition of post‐processing and validation can reduce uncertainty in the 3D‐printed proxy accuracy (difference of proxy geometry from the digital model). Post‐processing is a multi‐step cleaning of porous proxies involving pressurized ethanol flushing and oven drying. Proxies are validated by: (1) helium porosimetry and (2) digital measurements of porosity from thin‐section images of 3D‐printed proxies. 3D printer resolution was determined by measuring the smallest open channel in 3D‐printed “gap test” wafers. This resolution (400 µm) was insufficient to build porosity of Fontainebleau sandstone (～13%) from computed tomography data at the sample's natural scale, so proxies were printed at 15‐, 23‐, and 30‐fold magnifications to validate the workflow. Helium porosities of the 3D‐printed proxies differed from digital calculations by up to 7% points. Results improved after pressurized flushing with ethanol (e.g., porosity difference reduced to ～1% point), though uncertainties remain regarding the nature of sub‐micron “artifact” pores imparted by the 3D printing process. This study shows the benefits of including post‐processing and validation in any workflow to produce porous rock proxies.     

Nature and Estimated Human Toxicity of Polar Metabolite Mixtures in Groundwater Quantified as TPHd/DRO at Biodegrading Fuel Release Sites

Polar metabolites resulting from petroleum biodegradation are measured in groundwater samples as TPHd unless a silica gel cleanup (SGC) is used on the sample extract to isolate hydrocarbons. Even though the metabolites can be the vast majority of the dissolved organics present in groundwater, SGC has been inconsistently applied because of regulatory concern about the nature and toxicity of the metabolites. A two‐step approach was used to identify polar compounds that were measured as TPHd in groundwater extracts at five sites with biodegrading fuel sources. First, gas chromatography with mass spectrometry (GC‐MS) was used to identify and quantify 57 individual target polar metabolites. Only one of these compounds—dodecanoic acid, which has low potential human toxicity—was detected. Second, nontargeted analysis was used to identify as many polar metabolites as possible using both GC‐MS and GC×GC‐MS. The nontargeted analysis revealed that the mixture of polar metabolites identified in groundwater source areas at these five sites is composed of approximately equal average percentages of organic acids, alcohols and ketones, with few phenols and aldehydes. The mixture identified in downgradient areas at these five sites is dominated by acids, with fewer alcohols, far fewer ketones, and very few aldehydes and phenols. A ranking system consistent with systems used by USEPA and the United Nations was developed for evaluating the potential chronic oral toxicity to humans of the different classes of identified polar metabolites. The vast majority of the identified polar metabolites have a “Low” toxicity profile, and the mixture of identified polar metabolites present in groundwater extracts at these five sites is unlikely to present a significant risk to human health.     

Geochemistry of molybdenum in some stream sediments and waters

Elevated concentrations of Mo are present in both the waters and sediments of Tenmile Creek, downstream from the large Mo deposit at Climax. Colorado. Concentrations of Mo reach a maximum of 10mg/1 in the water and 384μ/g in the (?) 80 mesh fraction of the sediment. The Mo anomaly extends for more than 80 km downstream from Climax, and results from the mining and milling at Climax. Background Mo concentrations in the nearby mountainous area are < 10μg/l (water) and < 5μg/g (sediment). Immediately below three small unmined Mo-rich orebodies elsewhere in Colorado < 3μg/l Mo are present in the waters and 20–30μg/g Mo in the fine fraction of the sediments.The Mo in the sediment of Tenmile Creek is chiefly adsorbed on coatings of amorphous Fe oxyhydroxide. and is similar to its form below two small, unmined Mo deposits. Mining has not changed the character of the chemical processes responsible for Mo dispersion from the Climax site.A modified version of the WATEQF computer program (Plummeret al., 1976) predicts that Tenmile Creek is undersaturated with respect to ferrimolybdite. molybdenite, powellite, and ilsemannite. The Mo in the stream water occurs as the molybdate ion which can be adsorbed on amorphous Fe oxyhydroxides. These predictions are supported by the absence of Mo minerals in the sediment of Tenmile Creek.     

Near-infrared spectra of the leading and trailing hemispheres of Enceladus

We present individual spectra 0.8-2.5 μm of the leading and trailing hemispheres of Enceladus obtained with the CorMASS spectrograph on the 1.8 m Vatican Advanced Technology Telescope (VATT) at the Mount Graham International Observatory. While the absorption bands of water ice dominate the spectrum of both hemispheres, most of these bands are stronger on the leading hemisphere than the trailing hemisphere. In addition, longward of 1 μm, the continuum slope is greater on the leading hemisphere than the trailing hemisphere. These differences could be produced by the presence of particles on the trailing side that are smaller and/or microstructurally more complex than those on the leading side, consistent with the preferential erosion or structural degradation of regolith particle grains on the trailing side by magnetospheric sweeping. We also explore compositional differences between the two hemispheres by applying Hapke spectrophotometric mixture models to the spectra whose components include water ice and ammonia hydrate (1% NH₃⋅H₂O). We find that spectral models which include as much as 25% by weight ammonia hydrate intimately mixed with water ice and covering 80% of the illuminated area of the satellite fit the observed spectrum of both the leading and trailing hemispheres. Areal (checkerboard) mixing models of ammonia hydrate and water ice fit the leading hemisphere with 15% of the surface comprised of ammonia hydrate and the trailing hemisphere with 10% ammonia hydrate. Therefore, while these spectral data do not contain an unambiguous detection of ammonia hydrate on Enceladus, our spectral models do not preclude the presence of a modest amount of 1% NH₃⋅H₂O on both hemispheres. We examine spectral differences and similarities between both hemispheres and the tenuous E ring within which Enceladus orbits. The spectral resolution (R=λ/Δλ) of these CorMASS data (R∼300) is comparable to but nevertheless higher than that of the Visual-Infrared Mapping Spectrometer (VIMS) (R=225) onboard the Cassini spacecraft.     

Organochlorine contaminants in sea turtles from the Eastern Pacific

We measured organochlorine residues in three species of sea turtles from the Baja California peninsula, Mexico. Seventeen of 21 organochlorine pesticides analyzed were detected, with heptachlor epoxide and gamma-hexachlorocyclohexane the most prevalent (14 (40%) and 11 (31%) of the 35 tissue samples, respectively). PCBs were detected in all but one of the 9 turtles studied, with congener 18 the most commonly detected (8 (23%) of the samples). The dioxin-like congeners 118 and 180 were detected in 4 (11%) and 3 (9%) of the samples, respectively. Percent contribution of congeners was negatively correlated to their octanol-water partition coefficients, with kidney and muscle containing more lower-chlorinated congeners than liver or adipose samples. Levels of organochlorines detected in the present study were low, potentially attributable to the feeding habits of the predominant species collected in this study (herbivorous) and/or the samples obtained in an unindustrialized region.