Experiments on Surface Waves Interacting with Flexible Aquatic Vegetation

Surface wave interaction with aquatic vegetation appears to play a key role in coastal hydro-morpho-dynamics. As an example, the presence of a dense meadow at intermediate water depth is usually associated with a stable and resilient shore. Wave-meadow interactions are investigated here by means of physical modelling, with a focus on wave height distribution and hydrodynamics. The central part of a wave flume is covered by flexible artificial seagrass, composed of polyethylene leaves. This vegetation is tested in both near emergent and submerged conditions. The wave height reduction is evaluated by means of a drag coefficient defined from linear wave theory, which contains all the unknowns of the adopted methodology. The behaviour of such a coefficient is investigated as a function of a wave related Reynolds number. The influence of the flexibility of the leaves is also considered, together with a wave frequency parameter. The results show a complex behaviour with three different trends for near rigid, intermediate or highly flexible leaves. Amplitudes of the orbital velocities are investigated and show a fairly good match with the linear wave theory. On the contrary, the mean velocity along the water column appears to be modified by the seagrass for submerged leaves.     

Free Vibration Analysis of Symmetrically Laminated Composite Plates on Elastic Foundation and Coupled with Stationary Fluid

Free vibration analysis of symmetrically laminated composite plates resting on Pasternak elastic support and coupled with an ideal, incompressible and inviscid fluid is the objective of the present work. The fluid domain is considered to be infinite in the length direction but bounded in the depth and width directions. In order to derive the eigenvalue equation, Rayleigh-Ritz method is applied for the fluid-plate-foundation system. The efficiency of the method is proved by comparison studies with those reported in the open literature. At the end, parametric studies are carried out to examine the impact of different parameters on the natural frequencies.     

Least Square Finite Element Method for Viscous Splitting of Unsteady Incompressible Navier–Stokes Equations

In order to solve unsteady incompressible Navier–Stokes(N–S) equations, a new stabilized finite element method,called the viscous-splitting least square FEM, is proposed. In the model, the N–S equations are split into diffusive and convective parts in each time step. The diffusive part is discretized by the backward difference method in time and discretized by the standard Galerkin method in space. The convective part is a first-order nonlinear equation.After the linearization of the nonlinear part by Newton's method, the convective part is also discretized by the backward difference method in time and discretized by least square scheme in space. C~0-type element can be used for interpolation of the velocity and pressure in the present model. Driven cavity flow and flow past a circular cylinder are conducted to validate the present model. Numerical results agree with previous numerical results, and the model has high accuracy and can be used to simulate problems with complex geometry.     

Penetration Depth of Torpedo Anchor in Two-Layered Cohesive Soil Bed by Free Fall

The penetration depth of torpedo anchor in two-layered soil bed was experimentally investigated. A total of 177 experimental data were obtained in laboratory by varying the undrained shear strength of the two-layered soil and the thickness of the top soil layer. The geometric parameters of the anchor and the soil properties (the liquid limit, plastic limit, specific gravity, undrained shear strength, density, and water content) were measured. Based on the energy analysis and present test data, an empirical formula to predict the penetration depth of torpedo anchor in two-layered soil bed was proposed. The proposed formula was extensively validated by laboratory and field data of previous researchers. The results were in good agreement with those obtained for two-layered and single-layered soil bed. Finally, a sensitivity analysis on the parameters in the formula was performed.     

Molecular expression of opsin gene in growing juvenile mackerel (<Emphasis Type="Italic">Scomber japonicus</Emphasis> Houttuyn)

Fish have developed color vision that is closely adapted to their photic environments, where both spectral sensitivity and the number of visual opsins are influenced. The mackerel used in this study is one of the most important fishery stocks in Korea. The opsin gene of the mackerel juveniles after 20 days in hatching was isolated and characterized based on the molecular study of visual photoreceptor. The full-length mackerel opsin gene was obtained by PCR amplification of genomic DNA, as well as cDNA synthesis. Sequence analysis of the opsin gene showed that it contained a 1,080 bp open reading frame encoding 360 amino acids. Based on Schiff’s base formation (S114, K119), glycosylation (E3, F37) and palmitoylation (S281, 282), the deduced amino acid sequence had a typical rod opsin. The mackerel and Gempylus serpens showed 73.7% DNA homology on opsin gene, which was higher than any other of investigated species. In the analysis of phylogenetic relationship, the genetic placement of the mackerel is closer to that of Scombroidei than Labroidei, with supporting somewhat strong bootstrap value. In the analysis of Northern and RT-PCR, the probed products were observed only in rapidly growing juveniles. These findings indicate that in mackerel opsin mRNA expression can be detected in day-20 hatching larvae. It may play an important role in stimulating growth hormone.     

Variations in turbulent energy dissipation and water column stratification at the entrance of a tidally energetic strait

We observed tidal currents, turbulent energy dissipation and water column stratification at the entrance of a narrow strait (Neko Seto) in the Seto Inland Sea, Japan, using a free-falling turbulent microstructure profiler (TurboMAP) and acoustic Doppler current profiler (ADCP). The variation in turbulent energy dissipation at the entrance of the strait was not at quarter-diurnal frequency but at semi-diurnal frequency; turbulent energy dissipation was enhanced during the ebb tide, although it was moderate during the flood tide. This result is consistent with the results of Takasugi (1993), which showed the asymmetry of tidal energy loss during a semidiurnal tidal cycle using control volume analysis. It is suggested that significant turbulent energy dissipation is generated in the strait, which influences the properties of water outside the strait when tidal currents flow out from the strait.     

Vertical double silicate maxima in the sea-ice reduction region of the western Arctic Ocean: Implications for an enhanced biological pump due to sea-ice reduction

The R/V Mirai conducted hydrographic surveys in the western Arctic Ocean during summer 2004 (Mirai04) over wide east-west ranges from Alaska to eastern Siberia, where sea-ice cover has been greatly reduced in recent summers. The obtained data reveal differences in silicate profiles between shelf slope areas east and west of the Chukchi Plateau, the ridge that divides the Canada Basin into the Alaskan and east Siberian sides. East of the plateau, a single silicate maximum was found in a layer of Pacific-origin winter water, as examined in many previous studies. In contrast, west of the plateau, we found vertical double silicate maxima, which are reported for the first time in this study. The shallower silicate maximum corresponded to an N** minimum, signaling denitrification at the shelf bottom. This suggests that the shallower silicate maximum was caused by the spreading of shelf water. In contrast, the deeper silicate maximum corresponded to an oxygen minimum and a maximum silicate/phosphate ratio (Si/P), suggesting that this deeper maximum resulted from the decomposition of opal-shelled organisms. We also compared a silicate profile from Mirai04 to aprofile from the Arctic Ocean Section 94 (AOS94) expedition of 1994, a heavy ice year. The results suggest that sea-ice loss has enhanced biological activities, likely resulting in the appearance of the deeper silicate maximum.     

Infaunal burrow ventilation and pore-water transport in muddy sediments

The ventilation of burrows by tube-dwelling benthos is understood to be important in determining rates of exchange of solutes between the sediment and overlying water. However, few models have attempted to link the burrow ventilation behavior of tube-dwelling organisms with their geochemical consequences. The classic cylinder model of bioirrigation in muddy sediments (Aller, R.C., 1980. Quantifying solute distributions in the bioturbated zone of marine sediments by defining an average microenvironment. Geochimica et Cosmochimica Acta 44, 1955–1965) links pore-water processes and burrow sizes and distributions in the sediment by assuming that burrows are fully flushed. The equivalence between the cylinder model and the more commonly used one-dimensional non-local exchange model depends upon this assumption. However, this assumption has seldom been tested in the field. We have extended the cylinder model of bioirrigation to include burrow ventilation activities of organisms. Burrow ventilation is modeled as a simple non-local exchange of burrow water with overlying water. Model simulations indicate that burrow ventilation has a large effect on vertical profiles and fluxes of solute tracers. We collected data on burrow geometry in the field by CT-scanning freshly collected sediment cores. At the same study sites, we measured activity profiles of ²²²Rn, a naturally occurring radionuclide tracer of pore-water transport. With model geometry independently constrained, we tested the model by comparing our model-predicted profiles with measured profiles. Our results demonstrate that burrows in the field are not fully flushed. Our estimated burrow ventilation rates compare favorably with previous laboratory measurements. The inclusion of realistic burrow ventilation in this pore-water transport model strongly affects modeled solute profiles and fluxes. We demonstrate how model parameters can be determined from field samples and present a model that more realistically simulates pore-water transport processes in muddy sediments.     

Plankton distribution and vertical flux of biogenic matter during high summer stratification in the Krka estuary (Eastern Adriatic)

The aim of this study was to investigate phytoplankton abundance, composition and vertical export in the highly stratified Krka estuary, Croatia. The estuary is stratified throughout the year, and an interface between fresh- and brackish water plays an important role in production and degradation of biogenic matter. Vertical export of particulate organic carbon (POC), phytoplankton carbon (PPC) and faecal pellet carbon (FPC) was studied by deploying sediment traps in the middle and lower reach of the estuary and in the adjacent coastal zone. Zooplankton faecal pellet (FP) production experiments were conducted to provide additional information on the potential contribution of FP to the total carbon flux. High suspended concentrations of POC, chlorophyll a and phytoplankton was found in the lower reaches of the Krka estuary, adjacent to a source of anthropogenic eutrophication. The fraction of organic detritus to the total POC flux was 61–69% inside the estuary but only 7% at the marine station. This indicates that the primary producers in the surface layer of the Krka estuary are decomposed in and below the interface and then settle as detritus to the bottom. Low sedimentation rates in the coastal zone outside the estuary revealed that the eutrophication does not spread out of the estuary. Mesozooplankton played a modest role in vertical flux regulation, due to their low abundance and dominance of smaller forms as well as low faecal pellet production rates. It is concluded that processes taking place at the freshwater-seawater interface are of major importance for the vertical carbon flux in the investigated area.