Viruses as potential regulators of regional brown tide blooms caused by the alga,Aureococcus anophagefferens

Blooms of the brown tide organismAureccoccus anophagefferens have recurred in the coastal bays in New Jersey since 1995 and in the coastal bays of Long Island since 1985. Intracellular viral-like particles (VLPs) were documented during 1999–2000 brown tide blooms in Little Egg Harbor, New Jersey, but it was not determined whether cells were infected during the termination of the bloom. The objective of this study was to determine if VLPs infected and lysed natural populations ofA. anophagefferens in coastal bays of New Jersey and New York in 2002 with the same frequency as in 1999–2000 and especially at the termination of the bloom. Our results confirmed that the highest percentage (37.5%) of VLP-infected cells occurred at the termination of the brown tide bloom in New Jersey in 2002. Intracellular VLPs were present throughout the bloom event. The percentage of visibly infected cells was higher at the beginning of the bloom than during the peak of the bloom. The intracellular VLPs in natural populations ofA. anophagefferens were consistent in size and shape (approximately 140 nm in diameter) and comparable to those in previous studies. Concentrated viral isolates, prepared from waters during brown tide blooms in New York and New Jersey in 2002, infected healthy laboratoryA. anophagefferens cultures in vitro. The viral isolates associated with the highest laboratory viral activity (lysis positive) were concentrated from water samples having the highest viral and bacteria concentrations. The intracellular viruses in these virally infected laboratory cultures ofA. anophagefferens were similar in size and shape to those found in natural populations. The successful isolation of a virus specific toA. anophagefferens from a brown tide bloom in the field, the similarity of ultrastructure of VLPs infecting both natural populations and laboratory infected cultures, and the pattern of VLP infection during bloom activity in combination with the observed high percentage of VLP-infected cells during bloom termination, supports, the hypothesis that viruses may be a major source of mortality for brown tide blooms in regional coastal bays of New Jersey and New York.     

A macroscale analysis of coastal steepening around the coast of England and Wales

Coastal steepening potentially presents an array of management issues in the form of financial implications of sea defence degradation, increased risk posed to the hinterland as wave attenuation is reduced, 'coastal squeeze' and statutory requirements in the light of the Habitats Directive. The extent to which coastal steepening has occurred throughout England and Wales has been investigated through use of a GIS and dataset based on historical Ordnance Survey map information. Data were collected along 1084 selected profile lines, positioned so as to be geomorphologically representative of the coast. Features recorded from each map year included the positions of mean high water (MHW) and mean low water (MLW), the relative movements of which infer changing intertidal gradients. The results presented in this paper are on a subject and scale not previously published. It is revealed that 61% of the coastline studied has experienced a tendency towards steepening. Of the remainder, 33% has flattened, and 6% has experienced no rotational movement. This tendency towards steepening has been the dominant movement on each of the west, south, and east coasts.     

Estimating severity of liquefaction-induced damage near foundation

An empirical procedure for estimating the severity of liquefaction-induced ground damage at or near foundations of existing buildings is established. The procedure is based on an examination of 30 case histories from recent earthquakes. The data for these case histories consist of observations of the damage that resulted from liquefaction, and the subsurface soil conditions as revealed by cone penetration tests. These field observations are used to classify these cases into one of three damaging effect categories, ‘no damage’, ‘minor to moderate damage’, and ‘major damage’. The potential for liquefaction-induced ground failure at each site is calculated and expressed as the probability of ground failure. The relationship between the probability of ground failure and the damage class is established, which allows for the evaluation of the severity of liquefaction-induced ground damage at or near foundations. The procedure presented herein represents a significant attempt to address the issue of liquefaction effect. Caution must be exercised, however, when using the proposed model and procedure for estimating liquefaction damage severity, because they are developed based on limited number of case histories.     

Dynamic modelling of passive margin salt tectonics: effects of water loading, sediment properties and sedimentation patterns

We investigate the evolution of passive continental margin sedimentary basins that contain salt through two‐dimensional (2D) analytical failure analysis and plane‐strain finite‐element modelling. We expand an earlier analytical failure analysis of a sedimentary basin/salt system at a passive continental margin to include the effects of submarine water loading and pore fluid pressure. Seaward thinning sediments above a weak salt layer produce a pressure gradient that induces Poiseuille flow in the viscous salt. We determine the circumstances under which failure at the head and toe of the frictional–plastic sediment wedge occurs, resulting in translation of the wedge, landward extension and seaward contraction, accompanied by Couette flow in the underlying salt. The effects of water: (i) increase solid and fluid pressures in the sediments; (ii) reduce the head to toe differential pressure in the salt and (iii) act as a buttress to oppose failure and translation of the sediment wedge. The magnitude of the translation velocity upon failure is reduced by the effects of water. The subsequent deformation is investigated using a 2D finite‐element model that includes the effects of the submarine setting and hydrostatic pore pressures. The model quantitatively simulates a 2D approximation of the evolution of natural sedimentary basins on continental margins that are formed above salt. Sediment progradation above a viscous salt layer results in formation of landward extensional basins and listric normal growth faults as well as seaward contraction. At a later stage, an allochthonous salt nappe overthrusts the autochthonous limit of the salt. The nature and distribution of major structures depends on the sediment properties and the sedimentation pattern. Strain weakening of sediment favours landward listric growth faults with formation of asymmetric extensional depocentres. Episodes of low sediment influx, with partial infill of depocentres, produce local pressure gradients in the salt that result in diapirism. Diapirs grow passively during sediment aggradation.     

Geology and Metal Contents of the Ruttan volcanogenic massive sulfide deposit, northern Manitoba, Canada

The Paleoproterozoic Ruttan Cu–Zn volcanogenic massive-sulfide (VMS) deposit is a large, relatively low grade, bimodal-siliciclastic type deposit in the Rusty Lake volcanic belt of northern Manitoba. The deposit contained over 82.8 million tonnes of massive sulfide, of which 55.7 million tonnes were mined from 1973 to 2002. The deposit consists of a series of moderately to steeply dipping, south-facing lenses that extend along strike at the surface for 1.1 km and to a depth of 1.0 km. These lenses occur within a steeply dipping, bimodal volcanic, volcaniclastic and siliciclastic sequence. In the immediate mine area, transitional calc-alkalic to high-silica (tholeiitic), felsic, and intermediate volcanic/volcaniclastic rocks of the Mine Sequence are host to, and intercalated with, the massive-sulfide lenses. Transitional tholeiitic to calc-alkalic basalt and andesite are present in the footwall sequence, approximately 500 m down-section from the ore horizon. The overlying rocks are predominantly fine-grained volcaniclastics and siliciclastics, but include polyfragmental agglomerate that contains mafic bombs and scoriaceous felsic fragments. Syn-depositional felsic and mafic dikes, sills, and apophyses are ubiquitous throughout the Mine Sequence, including the ore lenses, indicating continued, near-vent magmatism, and volcanism during ore formation. Fabrics in altered hostrocks have consistent, down-plunge stretching lineations to the SSE that suggest the deposit has been elongated by a factor of ~1.2–1.5; otherwise, the deposit is remarkably undeformed. Syn- and post-depositional faults in the mine area have relatively minor displacements up to tens of meters. Proximal (within 200 m) footwall rocks exhibit moderate to strong chloritization, characterized by the upper greenschist to lower amphibolite facies assemblages that include cordierite–almandine–andalusite–sillimanite–biotite ± staurolite ± anthophyllite ± talc, and local silicification. The proximal hanging wall rocks are characterized by sericite ± gahnite alteration, which is restricted to within approximately 75 m of the uppermost lenses. Additional gangue minerals are anhydrite and carbonate minerals (siderite, dolomite, ankerite, and calcite), as well as chlorite, sericite, biotite, talc, and quartz. Carbonate (excluding siderite), potassium feldspar, silicification and epidotization are common distal alteration zones in the footwall to the Mine Sequence several kilometers to the northeast. There are three principal groups of massive sulfide lenses; the East lenses, the West lenses, and the Western Anomaly lenses to the far west. In general, Cu is relatively enriched at the stratigraphic base and in the center of the deposit, whereas Zn is enriched upsection and at the outer margins. Some of the Zn-rich ore exhibits primary mineralogical layering. Parts of the West and Western Anomaly lenses show two layers with Cu-rich bases and Zn-rich tops. The massive sulfide is typically 10–40-m thick; one area along the margin of the main lenses is over 130-m thick and may represent deposition adjacent to a syn-depositional fault. The main sulfide phases are pyrite, pyrrhotite, chalcopyrite, sphalerite, and galena, with tetrahedrite as the most abundant trace phase. Gahnite is ubiquitous in the chlorite-rich assemblages adjacent to the ore lenses. The average base, precious and trace metal contents estimated from Cu and Zn concentrates, and from millhead grades and recoveries. Metals easily transported as chloride and bisulfide complexes in hydrothermal fluids including: Pb, Ag, In, Cu, Cd, Au, and Zn are enriched by 1.5–2.5 orders of magnitude in comparison to the bulk continental crust. Other elements such as Sn, Mo, and As are at near-crustal concentrations, whereas Mn, Ga, and Co are significantly depleted in comparison to the crust. Calculated metal concentrations in the average hydrothermal fluid based on the average metal contents are comparable to, or higher than those measured at sediment covered ridge hydrothermal systems, which precipitate much of their metal budget in the subsurface. Average rare earth element contents for the sulfide are light rare earth element enriched (La_N/Yb_N=22) and range from 0.45 to 0.02x chondritic values, with a moderate negative Eu anomaly (Eu*=0.51). Metal and trace element contents in the Ruttan exhalite horizon, and in proximal (within 1–2 km) exhalites along strike from the 0.6 million tonne Dar-2 Cu–Zn deposit 12 km south of Ruttan, have positive Eu anomalies, whereas negative Eu anomalies are present at distance. The positive Eu anomalies reflect high temperature paleoseafloor hydrothermal venting and precipitation of Eu²⁺-enriched clays and possibly carbonates, and indicate proximity to base-metal deposits. Silver and lead are also enriched in the exhalites near the deposits, whereas Mn is enriched at ~1–3 km along strike, but not consistently. Editorial handling: B. Gemmel An erratum to this article is available at .     

Chemical and textural equilibration of garnet during amphibolite facies metamorphism: The influence of coupled dissolution–reprecipitation

Metamorphic equilibration requires chemical communication between minerals and may be inhibited through sluggish volume diffusion and or slow rates of dissolution in a fluid phase. Relatively slow diffusion and the perceived robust nature of chemical growth zoning may preclude garnet porphyroblasts from readily participating in low‐temperature amphibolite facies metamorphic reactions. Garnet is widely assumed to be a reactant in staurolite‐isograd reactions, and the evidence for this has been assessed in the Late Proterozoic Dalradian pelitic schists of the Scottish Highlands. The 3D imaging of garnet porphyroblasts in staurolite‐bearing schists reveals a good crystal shape and little evidence of marginal dissolution; however, there is also lack of evidence for the involvement of either chlorite or chloritoid in the reaction. Staurolite forms directly adjacent to the garnet, and its nucleation is strongly associated with deformation of the muscovite‐rich fabrics around the porphyroblasts. “Cloudy” fluid inclusion‐rich garnet forms in both marginal and internal parts of the garnet porphyroblast and is linked both to the production of staurolite and to the introduction of abundant quartz inclusions within the garnet. Such cloudy garnet typically has a Mg‐rich, Mn‐poor composition and is interpreted to have formed during a coupled dissolution–reprecipitation process, triggered by a local influx of fluid. All garnet in the muscovite‐bearing schists present in this area is potentially reactive, irrespective of the garnet composition, but very few of the schists contain staurolite. The staurolite‐producing reaction appears to be substantially overstepped during the relatively high‐pressure Barrovian regional metamorphism reflecting the limited permeability of the schists in peak metamorphic conditions. Fluid influx and hence reaction progress appear to be strongly controlled by subtle differences in deformation history. The remaining garnet fails to achieve chemical equilibrium during the reaction creating distinctive patchy compositional zoning. Such zoning in metamorphic garnet created during coupled dissolution–reprecipitation reactions may be difficult to recognize in higher grade pelites due to subsequent diffusive re‐equilibration. Fundamental assumptions about metamorphic processes are questioned by the lack of chemical equilibrium during this reaction and the restricted permeability of the regional metamorphic pelitic schists. In addition, the partial loss of prograde chemical and textural information from the garnet porphyroblasts cautions against their routine use as a reliable monitor of metamorphic history. However, the partial re‐equilibration of the porphyroblasts during coupled dissolution–reprecipitation opens possibilities of mapping reaction progress in garnet as a means of assessing fluid access during peak metamorphic conditions.