Molecular Identification and Expression Analysis of Carbonic Anhydrase VII in Pufferfish (Takifugu rubripes)

Ocean Science Journal - A carbonic anhydrase VII gene, encoding 277 amino acids, was identified in the intestinal tissue of pufferfish (Takifugu rubripes). The translated protein with an 833-bp...     

Debris flow overflowing flexible barrier: physical process and drag load characteristics

Landslides - The multiple-barrier mitigation strategy in the debris-flow source area is an effective approach to inhibit debris-flow entrainment and scale amplification along the flow path....     

The effect of weathering on optically stimulated luminescence dating

Optically stimulated luminescence (OSL) dating was applied to quartz samples recovered from the gravel sediments of deformed marine terrace at the Suryum site, southeastern Korea, but has yielded stratigraphically inconsistent ages. Micromorphological, chemical, and mineralogical analyses of the gravels indicate the possible influence of chemical weathering on the apparent OSL ages. In the course of weathering after emerging from beach environments, originally permeable gravels underwent infilling by halloysite-rich clays in their voids, export and import of radioactive elements, and loss of mechanical strength with the creation of a porosity within pebbles. Calculation based on the evolution of the weathering profile showed a severe fluctuation of dose rate caused by the change of water content and radioactive element concentrations. Samples recovered from the weathering profile inevitably include quartz grains derived from mechanically weakened pebbles or illuviated from the upper layer, making it difficult to determine the equivalent dose (D_e) values of exclusively depositional quartz sands. Quantitative evaluation of the change of fabric and chemistry of the sediments on the basis of pedologic insight significantly aids in the derivation of OSL ages consistent with geomorphology and other independent age controls.     

A new efficient 3D non-hydrostatic free-surface flow model for simulating water wave motions

A new three-dimensional, non-hydrostatic free surface flow model is presented. For simulating water wave motions over uneven bottoms, the model employs an explicit project method on a Cartesian the staggered gird system to solve the complete three-dimensional Navier–Stokes equations. A bi-conjugated gradient method with a pre-conditioning procedure is used to solve the resulting matrix system. The model is capable of resolving non-hydrostatic pressure by incorporating the integral method of the top-layer pressure treatment, and predicting wave propagation and interaction over irregular bottom by including a partial bottom-cell treatment. Four examples of surface wave propagation are used to demonstrate the capability of the model. Using a small of vertical layers (e.g. 2–3 layers), it is shown that the model could effectively and accurately resolve wave shoaling, non-linearity, dispersion, fission, refraction, and diffraction phenomena.     

Origin of Halogens and Nitrogen in Enstatite Chondrites

The EH and EL enstatite chondrites are the most reduced chondrite groups, having formed in nebular regions where the gas may have had high C/O and/or pH₂/pH₂O ratios. Enstatite chondrites (particularly EH) have higher CI- and Mg-normalized abundances of halogens (especially F and Cl) and nitrogen than ordinary chondrites and most groups of carbonaceous chondrites. Even relative to CI chondrites, EH and EL chondrites are enriched in F. We have found that literature values for the halogen abundance ratios in EH and EL chondrites are strongly correlated with the electronegativities of the individual halogens. We suggest that the most reactive halogens were the most efficient at forming compounds (e.g., halides) that were incorporated into EH-chondrite precursor materials. It seems plausible that, under the more-oxidizing conditions pertaining to the other chondrite groups, a larger fraction of the halogens remained in the gas. Nitrogen may have been incorporated into the enstatite chondrites as simple nitrides that did not condense under the more-oxidizing conditions in the regions where other chondrite groups formed. Literature data show that unequilibrated enstatite chondrites have light bulk N (δ ¹⁵N ≈ −20‰) compared to most ordinary (−5 to +20‰) and carbonaceous (+20 to +190‰) chondrites; this may reflect the contribution in enstatite chondrites of nitride condensates with δ¹⁵ N values close to the proposed nebular mean (~−400‰). In contrast, N in carbonaceous chondrites is mainly contained within ¹⁵N-rich organic matter. The major carrier of N in ordinary chondrites is unknown.     

Three‐dimensional simulation of tsunami run‐up around conical island

At the circular Babi Island in the Flores tsunami (1992) and pear shaped island in the Okushiri event (1993), unexpectedly large tsunami run‐up heights in the lee of conic islands were observed. The flume and basin physical model studies were conducted in the Coastal Hydraulic Laboratory, Engineering Research and Development Center, U.S. Army Corps of Engineers to provide a better understanding of the physical phenomena and verify numerical models used in predicting tsunami wave run‐up on beaches, islands, and vertical walls. Reasonably accurate comparison of run‐up height of solitary waves on a circular island has been obtained between laboratory experimental results and two‐dimensional computation model results. In this study we apply three‐dimensional RANS model to simulate wave run‐up on conical island. In the run‐up computation we obtain that 3D calculations are in very good comparison with laboratory and 2D numerical results. A close examination of the three‐dimensional velocity distribution around conical island to compare with depth‐integrated model is performed. It is shown that the velocity distribution along the vertical coordinate is not uniform: and velocity field is weaker in the bottom layer and higher on the sea surface. The maximum difference (about 40%) appears at the time when solitary wave reached the circular island.     

Structural changes in macrozoobenthic communities due to summer hypoxia in Gamak Bay,Korea

The purpose of this study was to examine the structural changes that macrozoobenthic communities underwent as a result of the annual summer hypoxia at the northern part of Gamak Bay, Korea. During this study period, summer hypoxia occurred at the northern part of Gamak Bay in July. Under hypoxic conditions, both the number of species and population density decreased rapidly. Species diversity also manifested lower values during this hypoxic period. Faunal composition changed seasonally with Capitella capitata dominant at the hypoxic sites in spring but disappearing in summer. The health condition of the benthic faunal community assessed by the composition of functional groups within community also changed due to the summer hypoxia from a slightly polluted condition to a highly polluted condition. From these results it has been shown that the recent macrozoobenthic community structure in Gamak Bay has returned to a state similar to what it was before dredging works commenced.     

Ecological significance of alkaline phosphatase activity and phosphatase-hydrolyzed phosphorus in the northern part of Gamak Bay, Korea

We investigated the ecological significance of alkaline phsophatase (APase) and alkaline phosphatase-hydrolyzable phosphorus (APHP) in the northern part of Gamak Bay, Korea. APase activity was detectable throughout the year, and dissolved inorganic phosphorus (DIP) concentration and APase activity are highly correlated and can be regarded as an indicator of DIP-limiting conditions. Also, a strong linear positive correlation between APase activity and Chl a concentration indicated that the major part of APase activity may have been induced by phytoplanktons. The APHP proportion in dissolved organic phosphorus (DOP) was above ca. 30% from winter to spring and below ca. 15% from summer to autumn due to freshwater discharge and uptake by phytoplankton. APHP may play an important role in species competition in coastal area such as northern part of Gamak Bay where DIP is limiting. Thus, APase induction by phytoplanktons may be ecologically significant, allowing dominance by these organisms under DIP-limiting conditions.     

Geochemical processes controlling arsenic mobility in groundwater: A case study of arsenic mobilization and natural attenuation

The behavior of As in the subsurface environment was examined along a transect of groundwater monitoring wells at a Superfund site, where enhanced reductive dechlorination (ERD) is being used for the remediation of groundwater contaminated with chlorinated solvents. The transect was installed parallel to the groundwater flow direction through the treatment area. The ERD technology involves the injection of organic C (OC) to stimulate in situ microbial dechlorination processes. A secondary effect of the ERD treatment at this site, however, is the mobilization of As, as well as Fe and Mn. The concentrations of these elements are low in groundwater collected upgradient of the ERD treatment area, indicating that, in the absence of the injected OC, the As that occurs naturally in the sediment is relatively immobile. Batch experiments conducted using sediments from the site inoculated with an Fe(III)- and As(V)-reducing bacterium and amended with lactate resulted in mobilization of As, Fe and Mn, suggesting that As mobilization in the field is due to microbial processes.     

Optimal seismic retrofit model for steel moment resisting frames with brittle connections

Based on performance-based seismic engineering, this paper proposes an optimal seismic retrofit model for steel moment resisting frames (SMRFs) to generate a retrofit scheme at minimal cost. To satisfy the acceptance criteria for the Basic Safety Objective (BSO) specified in FEMA 356, the minimum number of upgraded connections and their locations in an SMRF with brittle connections are determined by evolutionary computation. The performance of the proposed optimal retrofitting model is evaluated on the basis of the energy dissipation capacities, peak roof drift ratios, and maximum interstory drift ratios of structures before and after retrofitting. In addition, a retrofit efficiency index, which is defined as the ratio of the increment in seismic performance to the required retrofitting cost, is proposed to examine the efficiencies of the retrofit schemes derived from the model. The optimal seismic retrofit model is applied to the SAC benchmark examples for threestory and nine-story SMRFs with brittle connections. Using the retrofit efficiency index proposed in this study, the optimal retrofit schemes obtained from the model are found to be efficient for both examples in terms of energy dissipation capacity, roof drift ratio, and maximum inter-story drift ratio.