Modeling the impact of microbial activity on redox dynamics in porous media

The present study investigates the interaction between microbial growth and activity and the redox dynamics in natural porous media. The impact the transport regime has on this interaction is also addressed. Expressions for microbial growth are incorporated into a geochemical reaction network linking redox reaction rates to the activity of the microorganisms. A flexible simulation environment, the Biogeochemical Reaction Network Simulator (BRNS) is used for this purpose. Two reactive transport applications relevant to fields of contaminant hydrology and early diagenesis are simulated with the BRNS. Model results are evaluated based on a comparison with comprehensive datasets on the biodegradation of lactate in a sand column experiment and on the distribution of redox-sensitive chemical species in marine sediments of the Skagerrak, Denmark. It is shown that, despite quite different transport regimes, the geomicrobiological model performs equally well in the reproduction of measured chemical species distribution for both applications. This result emphasizes the broad applicability of the proposed approach. Our simulations support that the competitive behavior between various microbial groups is a process controlling the development of redox stratified environments. Furthermore, it is also shown that the transport regime is a key controlling factor for the degree of spatial correlation between microbial biomass distributions and redox reaction rates. Although all our simulations yield a pronounced stratification of the redox processes in the system, the biomass distribution is related to the associated reaction rates only in case of the advection controlled column experiment. In the early diagenetic application, mixing due to bioturbation is the dominant transport process for particulate matter, hence leading to fairly homogeneous distribution of bacterial biomasses which are unrelated to the spatial distribution of redox reaction rates. This homogeneous biomass distribution combined with the 1G carbon degradation model approach might explain why the steady state concentration profiles in such systems can be reproduced by diagenetic models without explicit representation of microbial growth.     

Landscape controls on long‐term runoff in subhumid heterogeneous Boreal Plains catchments

We compared median runoff (R) and precipitation (P) relationships over 25 years from 20 mesoscale (50 to 5,000 km²) catchments on the Boreal Plains, Alberta, Canada, to understand controls on water sink and source dynamics in water‐limited, low‐relief northern environments. Long‐term catchment R and runoff efficiency (RP^?1) were low and varied spatially by over an order of magnitude (3 to 119 mm/year, 1 to 27%). Intercatchment differences were not associated with small variations in climate. The partitioning of P into evapotranspiration (ET) and R instead reflected the interplay between underlying glacial deposit texture, overlying soil‐vegetation land cover, and regional slope. Correlation and principal component analyses results show that peatland‐swamp wetlands were the major source areas of water. The lowest estimates of median annual catchment ET (321 to 395 mm) and greatest R (60 to 119 mm, 13 to 27% of P) were observed in low‐relief, peatland‐swamp dominated catchments, within both fine‐textured clay‐plain and coarse‐textured glacial deposits. In contrast, open‐water wetlands and deciduous‐mixedwood forest land covers acted as water sinks, and less catchment R was observed with increases in proportional coverage of these land covers. In catchments dominated by hummocky moraines, long‐term runoff was restricted to 10 mm/year, or 2% of P. This reflects the poor surface‐drainage networks and slightly greater regional slope of the fine‐textured glacial deposit, coupled with the large soil‐water and depression storage and higher actual ET of associated shallow open‐water marsh wetland and deciduous‐forest land covers. This intercatchment study enhances current conceptual frameworks for predicting water yield in the Boreal Plains based on the sink and source functions of glacial landforms and soil‐vegetation land covers. It offers the capability within this hydro‐geoclimatic region to design reclaimed catchments with desired hydrological functionality and associated tolerances to climate or land‐use changes and inform land management decisions based on effective catchment‐scale conceptual understanding.     

A 2000‐year lipid biomarker record preserved in a stalagmite from north‐west Scotland

Previous studies on lipid biomarkers preserved in Chinese stalagmites have indicated that ratios of low‐molecular‐weight (LMW) to high‐molecular‐weight (HMW) n‐alkanes, n‐alkan‐2‐ones, n‐alkanols and n‐alkanoic acids can be used as an index of vegetation versus microbial organic matter input to the system and, by extension, a marker of climatic changes, with increases in the proportion of LMW compounds coinciding with colder periods. Here we test whether this hypothesis is equally applicable to a different geographical region (north‐west Scotland), by examining a stalagmite record of the past 200 years, and a wider range of lipid markers. We also test the applicability of other lipid proxies in this context, including the use of n‐alkane ratios, to interpret vegetation changes, and unsaturated alkanoic acid ratios as climatic indicators. The results show that lipid proxies preserved in stalagmites, and especially those related to vegetation, are potentially extremely useful in palaeoenvironmental research. Of particular value is the use of C₂₇/C₃₁ n‐alkane ratios as a proxy for vegetation change, clearly indicating variations between herbaceous and arboreal cover. This proxy has now been successfully applied to samples from diverse environments, and can be considered sufficiently robust to be of use in analysing future stalagmite records. It will be of particular value in areas where reliable pollen records are not available, as is often the case with deeper cave deposits. However, the division between LMW and HMW aliphatic compounds is not a clear‐cut case of microbial versus plant activity, with the changes in LMW compounds relating more closely to those in their HMW analogues than in specific bacterial biomarkers. The use of unsaturated alkanoic acid ratios here gives conflicting results, with the observed variation through time depending on the isomer measured. The discrepancies between the findings of this study and previous work are likely to be due to the varying controls on the lipids (original organic matter input, and compound degradation), which in turn will be affected by whether the main climatic limiting factor on the soil is temperature or precipitation. This suggests that lipid proxies preserved in stalagmites must be interpreted with care, particularly in the case of bacterial compounds which may be derived from within the cave or from the soil. However, many of these issues can be resolved by the use of multi‐proxy studies. Copyright © 2011 John Wiley & Sons, Ltd.     

Electrical resistivity imaging of hydrologic flow through surface coal mine valley fills with comparison to other landforms

Surface coal mining has altered land cover, near‐surface geologic structure, and hydrologic processes of large areas in central Appalachia, USA. These alterations are associated with changes in water quality such as elevated total‐dissolved solids, which is usually measured via its surrogate, specific conductance (SC). The SC of valley fill effluent streams is a function of fill construction methods, materials, and age; yet hydrologic studies that relate these variables to water quality are sparse due to the difficulty of conducting traditional hydrologic studies in mined landscapes. We used electrical resistivity imaging (ERI) to visualize the subsurface geologic structure and hydrologic flow paths within a valley fill. ERI is a noninvasive geophysical technique that maps spatiotemporal changes in resistivity of the subsurface. We paired ERI with artificial rainfall experiments to track infiltrated water as it moved through the valley fill. Results indicate that ERI can be used to identify subsurface geologic structure and track advancing wetting fronts or preferential flow paths. Our results suggest that the upper portion of the fill contains significant fines, whereas the deeper profile is primarily large rocks and void spaces. Water tended to pond on the surface of compacted areas until it reached preferential flow paths, where it appeared to infiltrate quickly down to >15 m depth in 75 min. ERI applications can improve understanding of how fill construction techniques influence subsurface water movement, and in turn may aid in the development of valley fill construction methods to reduce water quality effects.     

Large Eddy Simulation on Interaction Between in-Line and Cross-Flow Oscillation of A Circular Cylinder

This paper discusses numerical results from three-dimensional large eddy simulations of an oscillating cylinder under prescribed movements in uniform flow. Six cases,namely pure in-line,pure cross-flow and two groups of 'Figure of Eight' oscillation patterns are under investigation at Reynolds number Re=24000. The 'Figure of Eight' pattern in each group is with identical shape but opposite orbital directions. The numerical results on hydrodynamic forces,higher order force components,and vortex shedding mode...     

A laboratory study of the turbulent ekman layer

Abstract

Comparing characteristics of a turbulent Ekman boundary layer in a rotating apparatus with atmospheric observations and theories, we find that the similarity relations derived by Kazanski and Monin, and others, scale both laboratory and field data quite well, especially considering that the Coriolis parameter is larger by a factor of 10⁵ in the experiment than it is in the atmosphere. Eddy viscosity models and Deardorff's numerical model predict the properties of both with varying degrees of success. High frequency spectra of velocity fluctuations scale with the Kolmogoroff length and time scales. Both magnitude and direction of the surface shear stress were measured directly, with a heated film stress gauge.     

Assessing quality of volunteer crowdsourcing contributions: lessons from the Cropland Capture game

Volunteered geographic information (VGI) is the assembly of spatial information based on public input. While VGI has proliferated in recent years, assessing the quality of volunteer-contributed data has proven challenging, leading some to question the efficiency of such programs. In this paper, we compare several quality metrics for individual volunteers’ contributions. The data were the product of the ‘Cropland Capture’ game, in which several thousand volunteers assessed 165,000 images for the presence of cropland over the course of 6 months. We compared agreement between volunteer ratings and an image's majority classification with volunteer self-agreement on repeated images and expert evaluations. We also examined the impact of experience and learning on performance. Volunteer self-agreement was nearly always higher than agreement with majority classifications, and much greater than agreement with expert validations although these metrics were all positively correlated. Volunteer quality showed a broad trend toward improvement with experience, but the highest accuracies were achieved by a handful of moderately active contributors, not the most active volunteers. Our results emphasize the importance of a universal set of expert-validated tasks as a gold standard for evaluating VGI quality.     

Integrating Indoor and Outdoor Spaces for Pedestrian Navigation Guidance: A Review

In light of the many improvements within 3D urban modeling and Location‐Based Services, this article provides a timely review of the state‐of‐the‐art on integrating indoor and outdoor spaces in pedestrian navigation guidance aids. With people moving seamlessly between buildings and surrounding areas, navigation guidance tools should extend from merely outdoor or indoor guidance, to provide support in the combined indoor‐outdoor context. This article first examines the challenges and complexities of integrating indoor and outdoor spaces into a single navigation system. Next, by using objective selection criteria, 36 relevant studies were withheld and further reviewed on their specific developments in data model requirements, and algorithmic and context support for integrated IO navigation systems. This review shows that the challenges of dealing with both indoor and outdoor space structures, while taking into account pedestrian's freer use of space, currently complicate the proposition of a unified IO space concept for navigation. However, there are some ongoing developments (e.g. context definitions, algorithmic extensions, increased data availability, growing awareness of pedestrians’ perception during wayfinding) that will help to bring outdoor and indoor spaces closer together in the realm of combined geospatial analysis.