Study of the motions of fishing vessels by a time domain panel method

In this paper, a wide variety of computed motion results is presented for three existing fishing vessels. In order to do that, time domain computations of 3D ship motions are performed with a time domain Green's function. The computational method adopted is based on a previously developed one, whose numerical scheme here is subjected to modifications that increase its robustness and overall efficiency, so that it can be applied to calculate the motions of fishing vessels. The results are then compared with simulations using WAMIT for the zero speed case, and a strip theory method is used to determine the effect of forward speed. Results are presented for head seas, quartering head waves and following waves with three distinct Froude numbers.     

Design and testing of a non-linear power take-off simulator for a bottom-hinged plate wave energy converter

Eddy current brakes provide a versatile way of simulating the power take-off system (PTO) in model testing of small scale wave energy converters (WECs). This type of PTO simulator is based on the principle that a conductive material moving in a magnetic field generates a braking force proportional to its velocity. A bottom-hinged pitching plate WEC model has been designed using an eddy current brake as a PTO simulator. A dedicated electric current source unit was developed to provide a controllable and reliable level of DC current intensity to feed the magnetic field generating coils. Using a real-time data acquisition and control, this unit can be used to impose non-linear damping PTO characteristic curves in several types of WEC models based on eddy current brakes. In the present case, this current source has been used to simulate a constant damping PTO on a small scale pitching WEC model that has been tested in the IST wave flume. Two different cases were considered: one corresponding to a surface piercing plate and another to a fully submerged plate. Experimental results are presented for plate motion and for non-dimensional capture width.     

Regional decoupling between NW Atlantic barnacle recruit and adult density is related to changes in pelagic food supply and benthic disturbance

We investigated the regional variation in barnacle (Semibalanus balanoides) recruit and adult abundance on the NW Atlantic coast. At the end of the recruitment season (June–July), we sampled wave-exposed rocky intertidal sites in two regions on the open Atlantic coast (Maine, AM, and Nova Scotia, AN) and in two regions on the Gulf of St. Lawrence coast (Northumberland Strait, GN, and Cape Breton Island, GC). Recruit density was highest in the southernmost region (AM), followed by GN and, then, by AN and GC. Regional values of nearshore primary productivity (satellite data of chlorophyll-a concentration, a surrogate for phytoplankton abundance) were highest for AM and GN, suggesting that food supply (barnacles are filter feeders) is an important factor determining regional recruitment patterns. Adult barnacle density was regionally decoupled from recruit density. Adults occurred in very low abundances on the Gulf of St. Lawrence coast (GN and GC) and were relatively abundant on the Atlantic coast (AM and AN), although always in much lower abundances than recruits. The low adult densities on the Gulf of St. Lawrence coast seem to result mainly from intense ice scour, as this coast freezes extensively every winter, as opposed to the ice-free Atlantic coast. Ice scour thus appears to override regional recruitment differences in determining adult density. Therefore, our data suggest that both pelagic food supply and benthic disturbance contribute to setting regional patterns in barnacle population structure on the NW Atlantic coast.     

Live (stained) benthic foraminifera from the Rhône prodelta (Gulf of Lion,NW Mediterranean): Environmental controls on a river-dominated shelf

In this paper, we investigate the ecology of live (rose Bengal stained) benthic foraminifera collected at 20 stations ranging from 15 to 100 m depth in the Rhône prodelta (Gulf of Lions, NW Mediterranean). These sites were sampled in September 2006, five months after the Rhône River annual flood. Statistical analyses based on foraminiferal communities (> 150 μm) divide our study area into six main biofacies directly related to environmental conditions. Miliolid species are abundant in the relict prodeltaic lobe which is characterised by sand with low organic matter content. Close to the river mouth, the limited oxygen penetration in the sediment combined with important hydro-sedimentary processes constitute stressful conditions for foraminiferal faunas dominated by opportunistic species (e.g. Leptohalysis scottii). With increasing distance from the river mouth, foraminiferal faunas (e.g. Nonionella turgida, Eggerella scabra) adapted to thrive in sediments enriched in Rhône-derived organic matter under more stable hydro-sedimentary conditions appear. In the distal part of the Rhône River influence, benthic species (e.g. Valvulineria bradyana, Textularia agglutinans) living in fine sediment enriched in both continental and marine organic compounds emerge. At the deepest stations located in the south-eastern part of our study area, benthic foraminiferal faunas (e.g. Bulimina aculeata, Melonis barleeanus, Bigenerina nodosaria) are highly diverse, underlining stable environmental conditions characterised by marine-derived organic matter supplies and relatively deep oxygen penetration depth in the sediment. We also compare foraminiferal faunas sampled in September 2006 with communities sampled in June 2005, one month after the Rhône River annual flood (Mojtahid et al., 2009). This comparison suggests that opportunistic species (e.g. B. aculeata, Cassidulina carinata, V. bradyana) have responded to organic matter inputs related to marine primary production in June 2005.     

Vertical distribution and seasonality of peracarid crustaceans associated with intertidal macroalgae

Spatial patterns and seasonal fluctuations of intertidal peracarids from Tarifa Island, Strait of Gibraltar, were studied over a two-year period (December 2005–December 2007). A total of 25,749 individuals were collected, comprising 46 species. Amphipods were best represented in the total number of species (32) and individuals (89% of numerical abundance) followed by isopods (12 species and 11% abundance) and tanaids (2 species and 1%). The highest number of species was registered in intermediate levels (1–1.5 m) dominated by Corallina elongata, although the highest abundances of peracarids were associated to seaweeds of lower levels (0–1 m) such as Gelidium corneum, Osmundea pinnatifida, Valonia utricularis and a turf of Caulacanthus ustulatus. The most abundant peracarids, Hyale stebbingi, H. schmidti, H. perieri, Stenothoe monoculoides, Caprella penantis, C. grandimana, Dynamene edwardsii and Ischyromene lacazei, were present throughout the whole year during 2006 and 2007. The highest peracarid densities were measured in April–August coinciding with the highest development of seaweeds, just before the maximum values of water temperature measured at the end of summer. Multivariate analyses confirmed a clear zonation of algae and associated peracarids in a vertical gradient, which was maintained stable during the two-year study. Several physical and biological factors may regulate such patterns of peracarid abundance and future experimental studies are necessary to explore the importance of factors such as competition, predation or weather conditions.     

Diet of albacore Thunnus alalunga from the waters of Mauritius (western Indian Ocean) inferred from stomach contents and fatty acid analysis

The diet of albacore Thunnus alalunga from their spawning ground in the waters of Mauritius was investigated. The stomach contents of 249 albacore individuals, caught by industrial longliners and artisanal fishers, was analysed, and the dominant prey taxa were selected for lipid and fatty acid (FA) analysis. The FA profiles of prey were compared with those of liver tissue of spawning-capable and post-spawning female albacore, using multivariate analysis. Whereas stomach content analysis identified cephalopods and crustaceans as the dominant prey items in number, FA-profile analysis identified crustaceans and fishes as the most-frequently consumed prey of post-spawning female albacore. In contrast, the FA profiles of spawning-capable albacore and those of prey showed very low similarity. Analysis of the prey suggests that although cephalopods, crustaceans and fishes could all provide albacore with the required lipids and FAs, cephalopod prey seem to be less desirable owing to their lower energy content (i.e. low in total lipid, triacylglycerol, 16:0, 18:0 and 18:1ω9). Instead, the most beneficial food appeared to be locally available fishes, which are more energy-rich and have a higher docosahexaenoic acid/ eicosapentaenoic acid ratio. These results provide new information on the trophic ecology of albacore, promote our understanding of the importance of prey type for successful reproduction of albacore, and highlight the advantages of FA profiling to study diet.     

Properties of structure and function of cadmium-binding proteins/peptides from Euglena gracilis

Euglena gracilis makes two small Cd-binding proteins/peptides (Cd-BP I and Cd-BP II) in response to exposure to Cd²⁺. These proteins migrate slower than mammalian Cd-metallothionein (Cd-Mt) through Sephadex G-75, but like Cd-Mt also contain Zn and are separated into two species when chromatographed over a DEAE column. Both BPs are much less stable than Cd-Mt under acidic conditions. One source of this instability is that at least Cd-BP II contains acid-labile sulfide co-ordinated to the metals. It has been quantitated in Cd-BP II and shown to have a value of 1·25 ± 0·10 S²⁻/Cd. The reactivity of the Cd-binding sites in ligand substitution and thioldisulfide exchange reactions has been assessed. The reactions of Cd-BP I and II with pyridylazoresorcinol (PAR) were slow and displayed complex kinetic behavior. Similarly, both Cd-BPs react slowly and with complicated kinetics with 5,5′-dithiobis-(2-nitrobenzoate).     

Relationships between chlorophyll a, bacteria, ATP, POC and respiration rates in the Changjiang Estuary and the plume

Bacteria abundance, chlorophyll a, ATP and POC concentrations and respiration rates of microorganisms in the Changjiang Estuary and the plume were determined in July 1986. The high values of bacteria abundance occurred in the river mouth in association with suspended matter. It is assumed that bacteria were the major contributor to ATP and the main consumer of dissolved oxygen, and that the relationship between ATP and POC was present in that area. In the dilution zone (salinity; 25-30), instead of bacteria, phytoplankton was the major contributor to ATP and respiration rates, due to diatom bloom. Close relationships between Chi a and ATP, and ATP and POC were observed. Contribution of microbial carbon to POC was also estimated.