A sediment budget for a cultivated floodplain in tropical North Queensland,Australia

Sugarcane is grown on the floodplains of northern Queensland adjacent to the Great Barrier Reef lagoon. Sediment and nutrient loss from these sugarcane areas is considered a potential threat to coastal and marine ecosystems. To enable sugarcane cultivation, farmers have structured the landscape into different elements, comprising fields, water furrows, ‘headlands’ and drains. In order to apply appropriate management of the landscape and reduce export of sediment, it is important to identify which of these elements act as sediment sources or sinks. In this study erosion and deposition rates were measured for the different landscape elements in a subcatchment of the Herbert River and used to create a sediment budget. Despite large uncertainties, the budget shows that the floodplain area is a net source of sediment. Estimated sediment export varies between 2 and 5 t ha^?1 y^?1. The relative importance of the landscape elements as sediment sources could also be determined. Plant cane is identified as the most important sediment source. Water furrows generate most sediment, but are a less important source of exported sediment due to their low connectivity. Headlands and minor drains act as sediment traps. Copyright © 2007 John Wiley & Sons, Ltd.     

Advection in plankton models with variable elemental ratios

As ocean biogeochemical models evolve to permit the elemental composition of plankton populations and dissolved organic matter to vary, each element is normally assigned a separate state variable, which is advected and mixed independently of the others. In a population of cells with varying elemental quotas, the proper currency of the advection operator is subpopulations of similar cells. The spatial gradient in total C, N, or P summed over the spectrum of such subpopulations is identical to that calculated for the population means, so treating the various elements as independent should generally be a valid approximation. However, errors can arise in high-order advection schemes with nonlinear corrector terms, which are not additive across the subpopulations. Some numerical examples indicate that these errors are relatively small [O(10⁻³–10⁻⁴)] but can be as high as O(10⁻²) in certain cases. As grid resolution varies, the error scales approximately to the Courant number.     

0.99999999 confidence ambiguity resolution with GPS and Galileo

In this short contribution it is demonstrated how integer carrier phase cycle ambiguity resolution will perform in near future, when the US GPS gets modernized and the European Galileo becomes operational. The capability of ambiguity resolution is analyzed in the context of precise differential positioning over short, medium and long distances. Starting from dual-frequency operation with GPS at present, particularly augmenting the number of satellites turns out to have beneficial consequences on the capability of correctly resolving the ambiguities. With a 'double' constellation, on short baselines, the confidence of the integer ambiguity solution increases to a level of 0.99999999 or beyond. Electronic Publication     

Use of high spectral resolution remote sensing to determine leaf palatability of eucalypt trees for folivorous marsupials

In this study we assess the feasibility of remotely measuring canopy biochemistry, and thus the potential for conducting large-scale mapping of habitat quality. A number of studies have found nutrient composition of eucalypt foliage to be a major determinant of the distribution of folivorous marsupials. More recently it has been demonstrated that a specific group of secondary plant chemicals, the diformylphloroglucinols (DFPs), are the most important feeding deterrents, and are thus vital determinants of habitat quality. We report on the use of laboratory spectroscopy to attempt to identify one such DFP, sideroxylonal-A, in the foliage of Eucalyptus melliodora, one of the few eucalypt species browsed by folivorous marsupials. Reflectance spectra were obtained for freeze-dried, ground leaves using near infrared spectroscopy (NIRS) and for both oven-dried and fresh whole leaves using a laboratory-based (FieldSpec) spectroradiometer. Modified partial least squares (MPLS) regression was used to develop calibration equations for sideroxylonal-A concentration based on the reflectance spectra transformed as both the first and second difference of absorbance (Log 1/R). The predictive ability of the calibration equations was assessed using the standard error of calibration statistic (SECV). Coefficients of determination (r²) were highest for the ground leaf spectra (0.98), followed by the fresh leaf and dry leaf spectra (0.94 and 0.87, respectively). When applied to independent validation sub-sets, sideroxylonal-A was most accurately predicted from the ground leaf spectra (r² = 0.94), followed by the dry leaf and fresh leaf spectra (0.72 and 0.53, respectively). Two spectral regions, centred on 674 nm and 1394 nm, were found to be highly correlated with sideroxylonal-A concentration for each of the three spectral data sets studied. Results from this study suggest that calibration equations derived from modified partial least squares regression may be used to predict sideroxylonal-A concentration, and hence leaf palatability, of Eucalyptus melliodora trees, thereby indicating that the remote estimation of habitat quality of eucalypt forests for marsupial folivores is feasible.     

Genetic differentiation of populations of Greenlandic Arctic fox

Most microsatellites are very polymorphic. This makes them powerful markers for observing genetic differentiation between closely related populations. The population structure of the Greenlandic Arctic fox ( Alopex lagopus ) was studied genetically by analysing six polymorphic microsatellite loci of 75 foxes from four populations in different parts of Greenland. Genotypes were determined at the six loci for most of the individuals. Population differentiation was quantified in three different ways both within the total population and pairwise between all populations. The tests were Fisher's exact test, Rho estimates and Fst estimates, all of which supported a highly significant subdivision of the total population, and they showed significant differentiation in allele frequencies between all pairs of localities. It is concluded that the known long-distance migration of the Greenlandic Arctic fox has not resulted in complete genetic mixing of the populations. Fisher's exact test was also used to estimate levels of genetic differentiation between the two colour morphs: white and blue. No difference was found between allele frequencies of the two color morphs in any of the locations, and it was concluded that the white and blue morphs of the Greenlandic Arctic fox share the same habitat, at least during the mating season.     

Transport and deposition of large woody debris in streams: a flume experiment

Large woody debris (LWD) is an integral component of forested streams of the Pacific Northwest and elsewhere, yet little is known about how far wood is transported and where it is deposited in streams. In this paper, we report the results of flume experiments that examine interactions among hydraulics, channel geometry, transport distance and deposition of floating wood. These experiments were carried out in a 1.22-m-wide×9.14-m-long gravel bed flume using wooden dowels of various sizes as surrogate logs. Channel planforms were either self-formed or created by hand, and ranged from meanders to alternate bars. Floating pieces tended to orient with long axes parallel to flow in the center of the channel. Pieces were deposited where channel depth was less than buoyant depth, typically at the head of mid-channel bars, in shallow zones where flow expanded, and on the outside of bends. We hypothesize that the distance logs travel may be a function of the channel's debris roughness, a dimensionless index incorporating ratios of piece length and diameter to channel width, depth and sinuosity. Travel distance decreased as the ratio of piece length to both channel width and radius of curvature increased, but the relative importance of these variables changed with channel planform. Large pieces can move further than our debris roughness models predict if greater than 50% of the active channel area is deeper than the buoyant depth of the piece, or if momentum is high enough to carry pieces across shallows. Our debris roughness model allows first-order prediction of the amount of wood transport under various channel geometries.     

Dissolved Humic Substances Can Directly Affect Freshwater Organisms

Direct effects of pure humic substance (BS1 FA) on three different aquatic organisms (Ceratophyllum demersum, Dreissena polymorpha, and Chaetogammarus ischnus) were demonstrated in this study. Exposure to environmentally relevant concentrations (0.5 mg/L) of this humic substance led to the activation of the microsomal and soluble glutathione S‐transferase (GST) in Ceratophyllum demersum. Exposure to 3‐chlorobiphenyl showed also an elevation of GST activity, which is due to the proposed detoxication metabolism of these chlorinated biphenyl. Coexposure to a mixture of 3‐chlorobiphenyl and BS1 FA showed a reduction of enzyme elevation, but still significant over an untreated control. The direct impact of humic substances seems not to be restricted to a specific class of organisms.     

A metabolism-based trophic index for comparing the ecological values of shallow-water sediment habitats

We determined fluxes of oxygen and nutrients between water and sediments at 21 sites primarily in Virginia and North Carolina estuaries, over the past 15 yr. These sites represented broad ranges in salinity, tidal amplitude, hydrology, nutrient availability, turbidity, light availability, depth, sediment grain size, and anthropogenic disturbance. In general, we found that heterotrophically dominated sediments had the potential to degrade water quality, whereas photoautotrophy in the sediments ameliorated this impact. We propose a benthic trophic state index as a management tool to make general assessments of the degree to which sediments support ecological processes related to photoautotrophy. The index can be based on simple measurements of metabolic parameters. We also evaluated the relative significance of variability in the index across a number of spatial and temporal scales. Reduced photoautotrophy and/or enhanced heterotrophy tended to be associated with finer-grained, organic-rich sediments. This sediment type was common in oligohaline areas at water depths exceeding 2 m. Temporally, autotrophy declined from winter to spring particularly at sandy sites, while interannual variability was more pronounced for mud sites. *** DIRECT SUPPORT *** A01BY074 00011