A New Equation Solver for Modeling Turbulent Flow in Coupled Matrix‐Conduit Flow Models

Karst aquifers represent dual flow systems consisting of a highly conductive conduit system embedded in a less permeable rock matrix. Hybrid models iteratively coupling both flow systems generally consume much time, especially because of the nonlinearity of turbulent conduit flow. To reduce calculation times compared to those of existing approaches, a new iterative equation solver for the conduit system is developed based on an approximated Newton–Raphson expression and a Gauß–Seidel or successive over‐relaxation scheme with a single iteration step at the innermost level. It is implemented and tested in the research code CAVE but should be easily adaptable to similar models such as the Conduit Flow Process for MODFLOW‐2005. It substantially reduces the computational effort as demonstrated by steady‐state benchmark scenarios as well as by transient karst genesis simulations. Water balance errors are found to be acceptable in most of the test cases. However, the performance and accuracy may deteriorate under unfavorable conditions such as sudden, strong changes of the flow field at some stages of the karst genesis simulations.     

Environmental impacts of dredging and other sediment disturbances on corals: A review

A review of published literature on the sensitivity of corals to turbidity and sedimentation is presented, with an emphasis on the effects of dredging. The risks and severity of impact from dredging (and other sediment disturbances) on corals are primarily related to the intensity, duration and frequency of exposure to increased turbidity and sedimentation. The sensitivity of a coral reef to dredging impacts and its ability to recover depend on the antecedent ecological conditions of the reef, its resilience and the ambient conditions normally experienced. Effects of sediment stress have so far been investigated in 89 coral species (～10% of all known reef-building corals). Results of these investigations have provided a generic understanding of tolerance levels, response mechanisms, adaptations and threshold levels of corals to the effects of natural and anthropogenic sediment disturbances. Coral polyps undergo stress from high suspended-sediment concentrations and the subsequent effects on light attenuation which affect their algal symbionts. Minimum light requirements of corals range from <1% to as much as 60% of surface irradiance. Reported tolerance limits of coral reef systems for chronic suspended-sediment concentrations range from <10mgL(-1) in pristine offshore reef areas to >100mgL(-1) in marginal nearshore reefs. Some individual coral species can tolerate short-term exposure (days) to suspended-sediment concentrations as high as 1000mgL(-1) while others show mortality after exposure (weeks) to concentrations as low as 30mgL(-1). The duration that corals can survive high turbidities ranges from several days (sensitive species) to at least 5-6weeks (tolerant species). Increased sedimentation can cause smothering and burial of coral polyps, shading, tissue necrosis and population explosions of bacteria in coral mucus. Fine sediments tend to have greater effects on corals than coarse sediments. Turbidity and sedimentation also reduce the recruitment, survival and settlement of coral larvae. Maximum sedimentation rates that can be tolerated by different corals range from <10mgcm(-2)d(-1) to >400mgcm(-2)d(-1). The durations that corals can survive high sedimentation rates range from <24h for sensitive species to a few weeks (>4weeks of high sedimentation or >14days complete burial) for very tolerant species. Hypotheses to explain substantial differences in sensitivity between different coral species include the growth form of coral colonies and the size of the coral polyp or calyx. The validity of these hypotheses was tested on the basis of 77 published studies on the effects of turbidity and sedimentation on 89 coral species. The results of this analysis reveal a significant relationship of coral sensitivity to turbidity and sedimentation with growth form, but not with calyx size. Some of the variation in sensitivities reported in the literature may have been caused by differences in the type and particle size of sediments applied in experiments. The ability of many corals (in varying degrees) to actively reject sediment through polyp inflation, mucus production, ciliary and tentacular action (at considerable energetic cost), as well as intraspecific morphological variation and the mobility of free-living mushroom corals, further contribute to the observed differences. Given the wide range of sensitivity levels among coral species and in baseline water quality conditions among reefs, meaningful criteria to limit the extent and turbidity of dredging plumes and their effects on corals will always require site-specific evaluations, taking into account the species assemblage present at the site and the natural variability of local background turbidity and sedimentation.     

Continuous Multi‐probe Measurements in Fastflowing Waters Using a Hydrographic Slot

Taking continuous spatiotemporal in situ measurements with multi‐probes in fast‐flowing waters/rivers can be problematic because the sensors may be damaged by high shear forces and flotsam. To protect the multi‐probe and to enable easy access for the maintenance and calibration of the sensors, a special multi‐probe holder fixed in a hydrographic slot was developed. The validation of the probe system revealed a “memory effect” at short time scales (< 10 s) within sharp gradients caused by the overflow container of the multi‐probe rack keeping the sensors submerged in the sample water. Continuously recorded data (conductivity, temperature, pH, oxygen concentration and saturation, as well as in vivo fluorescence of chlorophyll‐a) from a research cruise on board the RV ALBIS along the river Elbe (river km 309) and entering the river Saale are presented. This river stretch upstream of the city of Magdeburg to the mouth of the Saale tributary was found to have a complex physicochemical character, which is attributable to the long mixing process of water from the river Saale and the river Elbe.     

Cracking risk of partially saturated porous media—Part I: Microporoelasticity model

Drying of deformable porous media results in their shrinkage, and it may cause cracking provided that shrinkage deformations are hindered by kinematic constraints. This is the motivation to develop a thermodynamics‐based microporoelasticity model for the assessment of cracking risk in partially saturated porous geomaterials. The study refers to 3D representative volume elements of porous media, including a two‐scale double‐porosity material with a pore network comprising (at the mesoscale) 3D mesocracks in the form of oblate spheroids, and (at the microscale) spherical micropores of different sizes. Surface tensions prevailing in all interfaces between solid, liquid, and gaseous matters are taken into account. To establish a thermodynamics‐based crack propagation criterion for a two‐scale double‐porosity material, the potential energy of the solid is derived, accounting—in particular—for mesocrack geometry changes (main original contribution) and for effective micropore pressures, which depend (due to surface tensions) on the pore radius. Differentiating the potential energy with respect to crack density parameter yields the thermodynamical driving force for crack propagation, which is shown to be governed by an effective macrostrain. It is found that drying‐related stresses in partially saturated mesocracks reduce the cracking risk. The drying‐related effective underpressures in spherical micropores, in turn, result in a tensile eigenstress of the matrix in which the mesocracks are embedded. This way, micropores increase the mesocracking risk. Model application to the assessment of cracking risk during drying of argillite is the topic of the companion paper (Part II). Copyright © 2009 John Wiley & Sons, Ltd.     

Tectono‐sedimentary evolution of lower to middle Miocene half‐graben basins related to an extensional detachment fault (western Crete,Greece)

Crustal extension in the overriding plate at the Aegean subduction zone, related to the rollback of the subducting African slab in the Miocene, resulted in a detachment fault separating high‐pressure/low‐temperature (HP‐LT) metamorphic lower from non‐metamorphic upper tectonic units on Crete. In western Crete, detachment faulting at deeper crustal levels was accompanied by structural disintegration of the hangingwall leading to the formation of half‐graben‐type sedimentary basins filled by alluvial fan and fan‐delta deposits. The coarse‐grained clastic sediments in these half‐grabens are exclusively derived from the non‐metamorphic units atop the detachment fault. Being in direct tectonic contact with HP‐LT metamorphic rocks of the lower tectonic units today, the basins must have formed in the period between c. 20 and 15 Ma, prior to the exposure of the HP‐LT metamorphic rocks at the surface, and juxtaposed with the latter during ongoing deformation.     

Methodology for the combination of sub-daily Earth rotation from GPS and VLBI observations

A combination procedure of Earth orientation parameters from Global Positioning System (GPS) and Very Long Baseline Interferometry (VLBI) observations was developed on the basis of homogeneous normal equation systems. The emphasis and purpose of the combination was the determination of sub-daily polar motion (PM) and universal time (UT1) for a long time-span of 13 years. Time series with an hourly resolution and a model for tidal variations of PM and UT1-TAI (dUT1) were estimated. In both cases, 14-day nutation corrections were estimated simultaneously with the ERPs. Due to the combination procedure, it was warranted that the strengths of both techniques were preserved. At the same time, only a minimum of de-correlating or stabilizing constraints were necessary. Hereby, a PM time series was determined, whose precision is mainly dominated by GPS observations. However, this setup benefits from the fact that VLBI delivered nutation and dUT1 estimates at the same time. An even bigger enhancement can be seen for the dUT1 estimation, where the high-frequency variations are provided by GPS, while the long term trend is defined by VLBI. The estimated combined tidal PM and dUT1 model was predominantly determined from the GPS observations. Overall, the combined tidal model for the first time completely comprises the geometrical benefits of VLBI and GPS observations. In terms of root mean squared (RMS) differences, the tidal amplitudes agree with other empirical single-technique tidal models below 4 μas in PM and 0.25 μs in dUT1. The noise floor of the tidal ERP model was investigated in three ways resulting in about 1 μas for diurnal PM and 0.07 μs for diurnal dUT1 while the semi-diurnal components have a slightly better accuracy.     

Climate change and coral reef bleaching: An ecological assessment of long-term impacts,recovery trends and future outlook

Since the early 1980s, episodes of coral reef bleaching and mortality, due primarily to climate-induced ocean warming, have occurred almost annually in one or more of the world's tropical or subtropical seas. Bleaching is episodic, with the most severe events typically accompanying coupled ocean–atmosphere phenomena, such as the El Niño-Southern Oscillation (ENSO), which result in sustained regional elevations of ocean temperature. Using this extended dataset (25+ years), we review the short- and long-term ecological impacts of coral bleaching on reef ecosystems, and quantitatively synthesize recovery data worldwide. Bleaching episodes have resulted in catastrophic loss of coral cover in some locations, and have changed coral community structure in many others, with a potentially critical influence on the maintenance of biodiversity in the marine tropics. Bleaching has also set the stage for other declines in reef health, such as increases in coral diseases, the breakdown of reef framework by bioeroders, and the loss of critical habitat for associated reef fishes and other biota. Secondary ecological effects, such as the concentration of predators on remnant surviving coral populations, have also accelerated the pace of decline in some areas. Although bleaching severity and recovery have been variable across all spatial scales, some reefs have experienced relatively rapid recovery from severe bleaching impacts. There has been a significant overall recovery of coral cover in the Indian Ocean, where many reefs were devastated by a single large bleaching event in 1998. In contrast, coral cover on western Atlantic reefs has generally continued to decline in response to multiple smaller bleaching events and a diverse set of chronic secondary stressors. No clear trends are apparent in the eastern Pacific, the central-southern-western Pacific or the Arabian Gulf, where some reefs are recovering and others are not. The majority of survivors and new recruits on regenerating and recovering coral reefs have originated from broadcast spawning taxa with a potential for asexual growth, relatively long distance dispersal, successful settlement, rapid growth and a capacity for framework construction. Whether or not affected reefs can continue to function as before will depend on: (1) how much coral cover is lost, and which species are locally extirpated; (2) the ability of remnant and recovering coral communities to adapt or acclimatize to higher temperatures and other climatic factors such as reductions in aragonite saturation state; (3) the changing balance between reef accumulation and bioerosion; and (4) our ability to maintain ecosystem resilience by restoring healthy levels of herbivory, macroalgal cover, and coral recruitment. Bleaching disturbances are likely to become a chronic stress in many reef areas in the coming decades, and coral communities, if they cannot recover quickly enough, are likely to be reduced to their most hardy or adaptable constituents. Some degraded reefs may already be approaching this ecological asymptote, although to date there have not been any global extinctions of individual coral species as a result of bleaching events. Since human populations inhabiting tropical coastal areas derive great value from coral reefs, the degradation of these ecosystems as a result of coral bleaching and its associated impacts is of considerable societal, as well as biological concern. Coral reef conservation strategies now recognize climate change as a principal threat, and are engaged in efforts to allocate conservation activity according to geographic-, taxonomic-, and habitat-specific priorities to maximize coral reef survival. Efforts to forecast and monitor bleaching, involving both remote sensed observations and coupled ocean–atmosphere climate models, are also underway. In addition to these efforts, attempts to minimize and mitigate bleaching impacts on reefs are immediately required. If significant reductions in greenhouse gas emissions can be achieved within the next two to three decades, maximizing coral survivorship during this time may be critical to ensuring healthy reefs can recover in the long term.