Simulation of the Askervein flow. Part 2: Large-eddy simulations

Large-eddy simulations of the neutrally stratified flow over the Askervein Hill were performed, to improve the knowledge of the flow obtained from field measurements and numerical simulations with Reynolds averaged Navier-Stokes (RANS) methods. A Lagrangian dynamic subgrid model was used but, to avoid the underdissipative character near the ground, it was merged with a damped Smagorinsky model. Simulations of a flat boundary-layer flow with this subgrid model showed that the turbulent vertical motions and shear stress were better resolved using grids with a stream to spanwise aspect ratio Δx / Δy = 2 than with an aspect ratio Δx / Δy = 1. Regarding the flow over the Askervein Hill, it was found that large-eddy simulations provide an acceptable solution for the mean-velocity field and better predictions of the turbulent kinetic energy in the upstream side of the hill than the model. However, as with the model, grid convergence was not achieved in the lee side and the size of the zone with reversed flow increased with the grid refinement. Nevertheless, the existence of the intermittent separation predicted with unsteady RANS in part one of this work seems unquestionable, due to the deceleration of the flow. In our opinion, a better modelling of the decelerating boundary layer in the lee side is required to improve the results obtained using equilibrium assumptions and achieve grid convergence.     

Taxonomic sufficiency for soft-bottom sublittoral mollusks assemblages in a tropical estuary, Guanabara Bay, Southeast Brazil

Guanabara Bay (GB) is considered to be one of the most polluted environments of the southern Brazilian coastline. This typical estuarine system is impacted by the heavy discharge of both industrial and domestic waste from the Rio de Janeiro metropolitan area. The mollusc community structure and distribution was investigated between 2000 and 2001, using a three month sampling design of 38 stations, according to austral seasons. Species abundance was aggregated into progressively higher taxa matrices (genus, family, order) and were analysed using multivariate techniques. Mollusc distribution in GB varied significantly in space and time and was probably ruled by the organic enrichment effects of hypoxia and altered redox conditions coupled with prevailing patterns of circulation. Within the sectors of GB an increasing gradient in mollusc diversity and occurrence was observed, ranging from the azoic and impoverished stations in the inner sector to a well-structured community in terms of species composition and abundance inhabiting the outer sector. The non-metric multidimensional scaling (nMDS) and cluster analysis showed similar results when species were aggregated into genera and families, while greater difference occurred at coarser taxonomic identification (order). The literature about taxonomic sufficiency has demonstrated that faunal patterns at different taxonomic levels tend to become similar with increased pollution. In Guanabara Bay, an analysis carried out solely at family level is perfectly adequate to describe the ecophysiological stress. Further aggregation to order level changed the perceived patterns of differences. However, a different taxonomic resolution can be chosen depending on the type of ecological patterns investigated.     

Evaluating the fitness for use of spatial data sets to promote quality in ecological assessment and monitoring

This article proposes and illustrates a practical methodological framework to evaluate the fitness for use of spatial data sets for environmental and ecological applications, focusing on user requirements for specified application contexts. The methodology is based on the use of metadata to analyze similarity between the data characteristics and the user’s needs or expectations for several quality indicators. Additionally, the concept of ‘critical factors’ is introduced in this framework, allowing users to define which quality indicators have greater importance given their own requirements or expectations and the specified application contexts. The proposed methodology further allows integrating and interconnecting the spatial data quality (SDQ) evaluation methodology with metadata geoportals in WebGIS platforms, facilitating its operation by users from non-spatial disciplines and with often limited expertise on this subject. Examples of the evaluation of fitness for use for specific application contexts within the project BIO_SOS (‘Biodiversity Multi-SOurce Monitoring System: From Space To Species’ FP7 project) are presented. By providing a prompt and straightforward evaluation tool, the proposed methodology can encourage the implementation of SDQ evaluation routines in ecological assessment and monitoring programs, promoting a more adequate use of geospatial data and ultimately contributing to well-supported policy and management decisions.     

Appraising stone column settlement prediction methods using finite element analyses

Numerous approaches exist for the prediction of the settlement improvement offered by the vibro-replacement technique in weak or marginal soil deposits. The majority of the settlement prediction methods are based on the unit cell assumption, with a small number based on plane strain or homogenisation techniques. In this paper, a comprehensive review and assessment of the more popular settlement prediction methods is carried out with a view to establishing which method(s) is/are in best agreement with finite element predictions from a series of PLAXIS 2D axisymmetric analyses on an end-bearing column. The Hardening Soil Model in PLAXIS 2D has been used to model the behaviour of both the granular column material and the treated soft clay soil. This study has shown that purely elastic settlement prediction methods overestimate the settlement improvement for large modular ratios, while the methods based on elastic–plastic theory are in better agreement with finite element predictions at higher modular ratios. In addition, a parameter sensitivity study has been carried out to establish the influence of a range of different design parameters on predictions obtained using a selection of elastic–plastic methods.     

A software solution for point counting. Petrographic thin section analysis as a case study

In the field of geology, as in many other fields, a common problem is the analysis of 2D sections. An example of this is the petrographic study of rock samples, i.e., the quantification of its mineral components and the percentages of each phase present in it. Conventionally, this quantification has been determined by point counting performed on thin sections. Although point counting is very time consuming, it is of common use in several domains including geology, biology, medicine, and materials sciences, among others. Point counting in thin sections is normally conducted through mechanical or electromechanical devices attached to a microscope; such devices are very expensive, offer limited functionality, and are very time consuming. In this contribution, we introduce an interactive visualization application called Rock.AR that reduces the amount of time required to apply this technique and simplify its work flow. It provides visual tools like distortion techniques, overview + detail, and statistics to assist the technique. A comparison between this application and similar tools through users' experiences is provided. We compare the time it takes to complete a session of point counting and the tools' usability.     

Sediment bioavailable organic matter,deposition rates and mixing intensity in the Setúbal–Lisbon canyon and adjacent slope (Western Iberian Margin)

The role of the Setúbal–Lisbon canyon in accumulation and transport of labile organic matter from the coastal sea and ocean surface water towards the deep sea was assessed by investigating the distribution of organic matter of different quality in sedimentary aggregates and surface sediments of the canyon and adjacent slopes. Total hydrolysable amino acids (THAA) and organic carbon (Corg) were measured from aggregates, and contents of Corg, chlorophyll a (chl a), phaeopigments (phaeo), chloroplastic pigment equivalents (CPE) from sediments. As indices of organic matter (OM) quality THAA:Corg, degradation index (DI), chl a:phaeo, chl a:Corg and C:N ratio were determined. Sediment profiles of chl a and the isotope 210 of lead (²¹⁰Pb) were used as tracers in a transport model to estimate deposition rates and background levels of the tracers, and sediment mixing rates (Db). Whereas bulk Corg contents of canyon and slope sediments were practically similar at all depths, higher contents of THAA, chl a and CPE, as well as higher THAA:Corg, DI and chl a:Corg, in aggregates and sediments from the upper reaches of the canyon indicate that labile organic matter accumulates in the upper canyon. This is confirmed by higher chl a and ²¹⁰Pb deposition and Db calculated from the model. Hence, the Setúbal–Lisbon canyon, specially the upper region, acts as a natural trap of organic matter that is transported to the region via lateral transport and vertical settling from primary productivity. Organic matter might be further transported in downward canyon direction via rebound processes. The chl a and ²¹⁰Pb profiles reveal active sediment mixing by physical processes and/or animal reworking.     

The Ambipolar Filamentation in the Warm Ionized Medium

We present the 2-D, two fluid (ions + neutrals) numerical simulations that we are carrying out in order to study the ambipolar filamentation process, in which a magnetized, partially ionized plasma is stirred by turbulence in the ambipolar frequency range. The higher turbulent velocity of the neutrals in the most ionized regions gives rise to a non-linear force driving them out of these regions, and causes the ions and the magnetic flux to condense in the most ionized regions, resulting in a filamentary structure where initial ionization inhomogeneities are amplified. This mechanism might help to explain some features observed in magnetized and partially ionized astrophysical plasmas as the interstellar medium.     

Theoretical solution for drained cylindrical cavity expansion in clays with fabric anisotropy and structure

Acta Geotechnica - This paper presents a novel, exact, semi-analytical solution for the quasi-static drained expansion of a cylindrical cavity in soft soils with fabric anisotropy and structure....