voboz: an almost-parameter-free halo-finding algorithm

We have developed an algorithm, called voboz (VOronoi BOund Zones), to find haloes in an N -body dark matter simulation; it has as little dependence on free parameters as we can manage. By using the Voronoi diagram, we achieve non-parametric, 'natural' measurements of each particle's density and set of neighbours. We then eliminate much of the ambiguity in merging sets of particles together by identifying every possible density peak, and measuring the probability that each does not arise from Poisson noise. The main halo in a cluster tends to have a high probability, while its subhaloes tend to have lower probabilities. The first parameter in voboz controls the subtlety of particle unbinding, and may be eliminated if one is cavalier with processor time; even if one is not, the results saturate to the parameter-free answer when the parameter is sufficiently small. The only parameter that remains, an outer density cut-off, does not influence whether or not haloes are identified, nor does it have any effect on subhaloes; it only affects the masses returned for supercluster haloes.     

History of climate and forests in tropical Africa during the last 8 million years

There have been major changes in climate and in the composition and distribution of forest during the last 8 Myr. During the last world glacial maximum (peak 18 000 yr B.P.) the climate was dry and cold and forest much reduced and fragmented. The last glacial period as a whole (12000–70000 B.P.) was dry in tropical Africa and so too were most of the other 20 major ice ages which have occurred since 2.43 Myr B.P., in comparison with intervening interglacials. The extent of forest must have oscillated greatly. There has been a general drying in climate since 8 Myr.     

Habitat use by small mammals in coastal marshes of Southwestern Louisiana

A short-term study based on snap-trap capture rates of small mammals in the marsh and levee system in southwestern Louisiana was conducted in the winter-spring period. Marsh rice rats (Oryzomys palustris) dominated marsh habitats and rice rats and fulvous harvest mice (Reithrodontomys fulvescens) were co-dominants on levees. Least shrews (Cryptotis parva) and house mice (Mus musculus) were also taken. Although rice rat capture rate in marshes was twice that from levees, the difference was not significant (p=0.1428). When found on levees, rice rats preferred portions of levees adjacent to marshes and canals (p<0.0001). We found few differences in rice rat capture rates from marsh and levee habitats, although capture rates from fresh marsh and adjacent levees were select levee ridges over the marsh and canal edges (0.1≥p≥0.05). The abundance of harvest mice on levees adjacent to intermediate marshes exceeded all other levee habitats. For reasons as yet unexplained, intermediate marshes and adjacent levees had the highest small mammal abundance and species richness. Conversely, fresh marshes and their adjacent levees had the lowest abundance and variety of small mammals.     

Fluid Borders: Rethinking Historical Geography and Fixed Map Boundaries in Contested Regions

This article introduces a quantitative methodology for analyzing contested map borders. The article applies the new analytical technique to a data set of thirty maps showing Bulgaria in ca. 800 CE, a disputed state and period in medieval historiography with relevance to modern national politics and territorial claims. Based on the data set, we generate a series of new maps that make explicit the fluid medieval boundaries and general disagreement among geographers and historiographers. Our analysis begins with a simple point-in-polygon procedure to create a majority map that depicts the points included within the borders of the Bulgarian polity in sixteen or more of the maps (>50 percent). The majority map is then combined with percentage maps, confidence interval map boundaries, and cluster maps. The confidence interval maps are created via a spatial bootstrapping procedure and measure the uncertainty in the majority map. The cluster maps are developed via a radial basis function and provide insight into the potential affectivity based on the cartographers' countries of origin. The final map reflects the general modern consensus of the borders of the Bulgarian polity around 800 CE. Besides its quantitative contribution to medieval and modern cartographic, historiographical, and political debates, this article has developed a widely applicable methodology for synthesizing map borders and territories in cases of cartographic disagreement.     

Persistence of yessotoxin under light and dark conditions

The change in concentration of the disulfated polyether yessotoxin (YTX) produced by a culture of the marine dinoflagellate Protoceratium reticulatum was measured in laboratory experiments under light and dark conditions. Experimental cultures were inoculated and grew at a growth rate of 0.14 d(-1) until stationary phase was reached, after approximately 21 days. Cultures were maintained in the stationary phase until 31 days after inoculation. Cells of P. reticulatum contained a concentration of approximately 10-15 pg YTX cell(-1) during stationary phase but this was considerably lower (<5 pg cell-1) during the growth phase. Low amounts of 45-hydroxy-YTX were also detected. At day 32, P. reticulatum was killed by cooling to 1 degrees C (confirmed microscopically) and YTX concentrations were measured periodically under light and dark conditions. YTX concentrations decreased rapidly to approximately 10% of the initial concentration within the first 3 days and depleted to near zero within a week in the light treatment. In the dark environment, YTX persisted longer with approximately 10% of the initial YTX concentration still remaining after 18 days.     

Reference and current Trophic Level Index of New Zealand lakes: benchmarks to inform lake management and assessment

ABSTRACT

Knowledge of trophic status is fundamental to understanding the condition and function of lake ecosystems. We developed regression models to predict chlorophyll a concentrations (chl a) in New Zealand lakes for reference and current states, based on an existing dataset of total nitrogen (TN) and total phosphorus (TP) concentrations for 1031 lakes. Models were then developed to predict Secchi depth based on chl a and a sediment resuspension term applicable to shallow lakes. Estimates of all four Trophic Level Index (TLI) variables (chl a, TN, TP and Secchi depth) were analysed to estimate reference and current state TLI for the nationally representative sample of 1031 lakes. There was a trend of eutrophication between reference and current states, with systematic differences among lake geomorphic types. Mean chl a increased 3.5-fold (2.42?mg?m^?3 vs. 8.32?mg?m^?3) and mean Secchi depth decreased (indicating lower clarity) by approximately one-third (9.62?m vs. 6.48?m) between reference and current states. On average, TLI increased by 0.67, with the TLI increase >1 in approximately one-third (31%) of lakes. This study informs the status of lake ecosystems in NZ and provides benchmarks to guide management and assessment.     

Climate change adaptation,social capital,and the performance of polycentric governance institutions

Climatic Change - How do patterns of interactions among policy actors shape their ability to contribute to climate change adaptation decision-making processes in fragmented regional governance...     

Galileo in-situ dust measurements in Jupiter’s gossamer rings

Galileo was the first artificial satellite to orbit Jupiter. During its late orbital mission the spacecraft made two passages through the giant planet’s gossamer ring system. The impact-ionization dust detector on board successfully recorded dust impacts during both ring passages and provided the first in-situ measurements from a dusty planetary ring. During the first passage—on 5 November 2002 while Galileo was approaching Jupiter—dust measurements were collected until a spacecraft anomaly at 2.33R_J (Jupiter radii) just 16 min after a close flyby of Amalthea put the spacecraft into a safing mode. The second ring passage on 21 September 2003 provided ring dust measurements down to about 2.5R_J and the Galileo spacecraft was destroyed shortly thereafter in a planned impact with Jupiter. In all, a few thousand dust impacts were counted with the instrument accumulators during both ring passages, but only a total of 110 complete data sets of dust impacts were transmitted to Earth. Detected particle sizes range from about 0.2 to 5 μm, extending the known size distribution by an order of magnitude towards smaller particles than previously derived from optical imaging [Showalter, M.R., de Pater, I., Verbanac, G., Hamilton, D.P., Burns, J.A., 2008. Icarus 195, 361-377; de Pater, I., Showalter, M.R., Macintosh, B., 2008. Icarus 195, 348-360]. The grain size distribution increases towards smaller particles and shows an excess of these tiny motes in the Amalthea gossamer ring compared to the Thebe ring. The size distribution for the Amalthea ring derived from our in-situ measurements for the small grains agrees very well with the one obtained from images for large grains. Our analysis shows that particles contributing most to the optical cross-section are about 5 μm in radius, in agreement with imaging results. The measurements indicate a large drop in particle flux immediately interior to Thebe’s orbit and some detected particles seem to be on highly-tilted orbits with inclinations up to 20°. Finally, the faint Thebe ring extension was detected out to at least 5R_J, indicating that grains attain higher eccentricities than previously thought. The drop interior to Thebe, the excess of submicron grains at Amalthea, and the faint ring extension indicate that grain dynamics is strongly influenced by electromagnetic forces. These findings can all be explained by a shadow resonance as detailed by Hamilton and Krüger [Hamilton, D.P., Krüger, H., 2008. Nature 453, 72-75].     

Proterozoic mafic magmatism in Siberian craton: An overview and implications for paleocontinental reconstruction

We present a summary of late Paleoproterozoic to Neoproterozoic mafic magmatism in the Siberian craton, including recently published U–Pb and ⁴⁰Ar–³⁹Ar dates. These new precise ages suggest that at least some of the previously published K–Ar ages of Siberian mafic bodies should be ignored. The time–space geochronological chart, or the ‘barcode’ of mafic magmatic events shows significant differences between northern and southern Siberia. Both are characterized by ∼1900–1700 Ma magmatic events, but then there was an almost 1 Ga mafic magmatic ‘pause’ in south Siberia until ∼800 Ma. Meanwhile there are indications of multiple mafic magmatic events in North Siberia (Anabar shield and Olenek uplift) between ∼1600 and 1000 Ma. A series of magmatic events probably related to the breakup of Rodinia occurred in southern Siberia after ∼800 Ma. So far, there are no indications of late Neoproterozoic mafic magmatism in North Siberia. Ca. 1000–950 Ma mafic sills were reported from Meso- to Neo-Proterozoic sedimentary successions in the Sette-Daban area on the east side of the Siberian craton, but their tectonic setting is debated. Recent Ar–Ar dates of ∼1750 Ma for NW-trending dykes in the Aldan and Anabar shields, together with similar-age NNE-trending Baikal uplift dykes in south-eastern Siberia suggest the existence of a giant radial dyke swarm possibly related to a mantle plume centred in the Vilyui River area.