Emerging coral diseases: a temperature‐driven process?

In the last few decades there has been a surge in research focusing on coral disease. While climate change, specifically rising sea surface temperature, has been proposed as a major and growing driver of the emergence of marine diseases, to date a solid connection between disease epizootics and elevated sea surface temperature has not been established. However, a wealth of data now exists, compiled from many different perspectives, that may support such a connection. In this work we provide a comprehensive review targeting one coral disease, black band disease, that spans the infection process, pathobiology, and epizootiology, and links specific mechanisms of the disease process to increasing temperatures. This temperature‐driven pattern of infection can be expanded to include similar processes associated with other temperature‐related coral diseases. The conclusions presented here are based upon the results of many studies using a diverse suite of approaches that have been synthesized to argue that the emergence and continuing spread of black band disease is linked to warming sea surface temperatures. In summary, as global ocean temperatures increase seasonally and over decades, the environment shifts to become more favorable for the growth of potentially pathogenic microorganisms endemic to the immediate environment of the reef. The increase in the relative number of potential pathogens in the microbial community produces microenvironments conducive to the growth of other potential pathogens, leading to infection by a polymicrobial consortium. This consortium is easily perturbed by a (seasonal) temperature decrease, but remains associated with the coral host and can be reactivated with a subsequent seasonal increase in temperature, resulting in a cycle of temperature‐dependent disease emergence.     

Dominant amphipods of Posidonia oceanica seagrass meadows display considerable trophic diversity

Gut content examination and trophic markers (fatty acids, stable isotopes of C and N) were combined to delineate the diet of the dominant species of amphipods from Mediterranean Posidonia oceanica seagrass meadows and to highlight trophic diversity among this community. Our results indicate that, although all dominant species heavily relied on macroalgal epiphytes, considerable interspecific dietary differences existed. Carbon stable isotope ratios notably showed that some of the amphipod species favored grazing on epiphytes from leaves or litter fragments (Apherusa chiereghinii, Aora spinicornis, Gammarus aequicauda), while others such as Dexamine spiniventris preferred epiphytes from rhizomes. The remaining amphipods (Caprella acanthifera, Ampithoe helleri and Gammarella fucicola) readily consumed both groups. In addition, SIAR modeling suggested that most species had a mixed diet, and relied on several food items. Fatty acid analysis and gut contents revealed that contributions of microepiphytic diatoms and of benthic and suspended particulate organic matter to the diet of amphipods were anecdotal. None of the examined species seemed to graze on their seagrass host [low 18:2(n‐6) and 18:3(n‐3) fatty acids contents], but Gammarus aequicauda partly relied on seagrass leaf detritus, as demonstrated by the lesser ¹³C‐depletion of their tissues. Overall, our findings suggest that amphipods, because of their importance in the transfer of organic matter from primary producers and detritus to higher rank consumers, are key items in P. oceanica‐associated food webs.     

Validation of AltiKa Matching Pursuit Rain Flag

The major drawback of Ka band, operating frequency of the AltiKa altimeter on board SARAL, is its sensitivity to atmospheric liquid water. Even light rain or heavy clouds can strongly attenuate the signal and distort the signal leading to erroneous geophysical parameters estimates. A good detection of the samples affected by atmospheric liquid water is crucial. As AltiKa operates at a single frequency, a new technique based on the detection by a Matching Pursuit algorithm of short scale variations of the slope of the echo waveform plateau has been developed and implemented prelaunch in the ground segment. As the parameterization of the detection algorithm was defined using Jason-1 data, the parameters were re-estimated during the cal-val phase, during which the algorithm was also updated. The measured sensor signal-to-noise ratio is significantly better than planned, the data loss due to attenuation by rain is significantly smaller than expected (<0.1%). For cycles 2 to 9, the flag detects about 9% of 1Hz data, 5.5% as rainy and 3.5 % as backscatter bloom (or sigma0 bloom). The results of the flagging process are compared to independent rain data from microwave radiometers to evaluate its performances in term of detection and false alarms.     

Calibration and use of continuous heat-type automated seepage meters for submarine groundwater discharge measurements

Submarine groundwater discharge (SGD) assessments were conducted both in the laboratory and at a field site in the northeastern Gulf of Mexico, using a continuous heat-type automated seepage meter (seepmeter). The functioning of the seepmeter is based on measurements of a temperature gradient in the water between downstream and upstream positions in its flow pipe. The device has the potential of providing long-term, high-resolution measurements of SGD. Using a simple inexpensive laboratory set-up, we have shown that connecting an extension cable to the seepmeter has a negligible effect on its measuring capability. Similarly, the observed influence of very low temperature (≤3 °C) on seepmeter measurements can be accounted for by conducting calibrations at such temperatures prior to field deployments. Compared to manual volumetric measurements, calibration experiments showed that at higher water flow rates (>28 cm day⁻¹ or cm³ cm⁻² day⁻¹) an analog flowmeter overestimated flow rates by ≥7%. This was apparently due to flow resistance, turbulence and formation of air bubbles in the seepmeter water flow tubes. Salinity had no significant effect on the performance of the seepmeter. Calibration results from fresh water and sea water showed close agreement at a 95% confidence level significance between the data sets from the two media (R² = 0.98). Comparatively, the seepmeter SGD measurements provided data that are comparable to manually-operated seepage meters, the radon geochemical tracer approach, and an electromagnetic (EM) seepage meter.     

Storm surge induced flux through multiple tidal passes of Lake Pontchartrain estuary during Hurricanes Gustav and Ike

In September 2008, Hurricanes Gustav and Ike generated major storm surges which impacted the Lake Pontchartrain estuary in Louisiana. This paper presents analyses of in situ measurements acquired during these storm events. The main data used in the analyses were from three bottom mounted moorings equipped with conductivity, temperature, and depth sensors, acoustic Doppler current profilers (ADCPs), and a semi-permanent laterally mounted horizontal acoustic Doppler profiler (ADP). These moorings were deployed in the three major tidal channels that connect Lake Pontchartrain with the coastal ocean. A process similar to tidal straining was observed: the vertical shear of the horizontal velocity was negligible during the inundation stage, but a shear of 0.8 m/s over a less than 5 m water column was recorded during the receding stage, 2–3 times the normal tidal oscillations. The surge reached its peak in the Industrial Canal 1.4–2.1 h before those in the other two channels. The inward flux of water lasted for a shorter time period than that of the outward flux. The inward flux was also observed to have much smaller magnitude than the outward flux (∼960–1200 vs. 2100–3100 million m³). The imbalance was believed to have been caused by the additional water into Lake Pontchartrain through some small rivers and inundation over the land plus rainfall from the hurricanes. The flux through the Industrial Canal was 8–12%, while the flux through the other two tidal passes ranged between 17% and 70% of the total, but mostly split roughly half-half of the remaining (∼88–92% of the total).     

Local and landscape effects on spatial patterns of mangrove forest during wetter and drier periods: Moreton Bay,Southeast Queensland,Australia

Land use/cover and mangrove spatial changes were assessed for ten sites and their sub-catchments in Southeast Queensland, Australia. Two time periods were involved: 1972–1990, a period of relatively high rainfall, and 1990–2004, which was significantly drier. Aerial photographs and Landsat satellite imagery were used to map the inter-tidal wetlands and classify the land use/cover in the sub-catchments. A Maximum Likelihood Classification was used to map three types of land cover: agriculture, built-up and plantation forest. Mangroves (mainly Avicennia marina) were the focus as they have been recorded over recent decades encroaching into salt marsh. The Mangrove-Salt marsh Interface (MSI) Index was developed to quantify the relative opportunity for mangroves to expand into salt marshes, based on the shared boundary between them. The index showed a consistent relationship with mangrove expansion and change. To address problems of high dimensionality and multi-collinearity of predictor variables, a Partial Least Squares Regression (PLSR) model was used. A key finding of this research was that the contribution of environmental variables to spatial changes in the mangroves was altered following a reduction in rainfall. For example, agriculture had more influence on mangrove expansion and change during the wet period than during the dry period.     

Guiding ecological principles for marine spatial planning

The declining health of marine ecosystems around the world is evidence that current piecemeal governance is inadequate to successfully support healthy coastal and ocean ecosystems and sustain human uses of the ocean. One proposed solution to this problem is ecosystem-based marine spatial planning (MSP), which is a process that informs the spatial distribution of activities in the ocean so that existing and emerging uses can be maintained, use conflicts reduced, and ecosystem health and services protected and sustained for future generations. Because a key goal of ecosystem-based MSP is to maintain the delivery of ecosystem services that humans want and need, it must be based on ecological principles that articulate the scientifically recognized attributes of healthy, functioning ecosystems. These principles should be incorporated into a decision-making framework with clearly defined targets for these ecological attributes. This paper identifies ecological principles for MSP based on a synthesis of previously suggested and/or operationalized principles, along with recommendations generated by a group of twenty ecologists and marine scientists with diverse backgrounds and perspectives on MSP. The proposed four main ecological principles to guide MSP—maintaining or restoring: native species diversity, habitat diversity and heterogeneity, key species, and connectivity—and two additional guidelines, the need to account for context and uncertainty, must be explicitly taken into account in the planning process. When applied in concert with social, economic, and governance principles, these ecological principles can inform the designation and siting of ocean uses and the management of activities in the ocean to maintain or restore healthy ecosystems, allow delivery of marine ecosystem services, and ensure sustainable economic and social benefits.