Carbon and nitrogen utilization in two species of Red Sea corals along a depth gradient: Insights from stable isotope analysis of total organic material and lipids

We examined the utilization of carbon and nitrogen in two common Red Sea coral species (Stylophora pistillata and Favia favus), differing in colony morphology and polyp size, along a depth gradient down to 60 m. We describe the changes in C/N ratios and in the stable isotope composition of carbon and nitrogen of coral’s tissue and algal symbionts. We also measured the carbon isotopic composition of the lipid fraction extracted from both coral tissue and algal symbionts in order to reveal the changes in the carbon source utilized by the host coral for lipid synthesis.The results show that for both species, δ¹³C decreases by 7–8‰ in animal tissue, algal symbionts and in the lipid fractions as depth increases. However, in contrast to previous reports, the difference between δ¹³C values of coral tissue and algal symbionts does not increase with depth. δ¹⁵N values of coral tissue and algal symbionts in both species do not correlate with depth suggesting that the heterotrophic capacity of these corals does not increase with depth. δ¹³C values of tissue lipids were depleted by an average of 3.5‰ compared to δ¹³C of the entire tissue at all depths. δ¹³C values of algal lipids were depleted by an average of 2‰ compared to δ¹³C of the entire zooxanthellae at all depths, indicating high efficiency of carbon recycling between the two symbiotic partners along the entire gradient. The depletion of lipids is attributed to the fractionation mechanism during lipid synthesis. In addition, for both species, δ¹³C values of algal lipids were enriched compared with δ¹³C of tissue lipids. In S. pistillata, the difference between δ¹³C values of tissue lipids and algal lipids increased linearly with depth, indicating a change in the sources of carbon utilized by the coral for lipid synthesis below 20 m from an autotrophic to a heterotrophic source. However, in F. favus, this average difference was 4 times larger compared to shallow S. pistillata and was constant along the entire depth gradient, suggesting that F. favus uses heterotrophically-acquired carbon for lipid synthesis regardless of depth. Overall, F. favus exhibited enriched δ¹³C and δ¹⁵N values compared to S. pistillata along the entire gradient. We attribute these differences to both morphological differences (i.e. colony morphology, tissue thickness and polyp size) between the two species and to a higher heterotrophy/autotrophy ratio in F. favus at all depths. The C/N ratio in S. pistillata tissue decreased with increasing water depth whereas in F. favus it remained constant. This reflects a higher heterotrophic capacity in the large polyped F. favus, at all depths.     

Compound- and enzyme-specific phosphodiester hydrolysis mechanisms revealed by δO of dissolved inorganic phosphate: Implications for marine P cycling

We have studied the oxygen isotope signature of inorganic phosphate (P_i) generated by hydrolysis of nucleic acid phosphodiester (P-diester) compounds by cell-free enzymes (Deoxyribonuclease 1, Phosphodiesterase 1, Alkaline phosphatase) and microbial cultures at natural isotopic abundances. We demonstrate that the diesterase-catalyzed hydrolytic step leads to incorporation of at least one water O into released P_i for a total of two O atoms from water incorporated into P_i released from P-diesters. In the presence of Phosphodiesterase 1, ¹⁶O is preferentially incorporated into nucleotides released from DNA; whereas ¹⁸O is preferentially incorporated into nucleotides released from RNA. A strong consistency between predicted O-isotope regeneration signatures based on results of cell-free enzyme experiments and measured isotopic signatures from independent experiments with E. coli cultures was observed and confirms proposed models for phosphoester hydrolysis. Results from these studies made at natural ¹⁸O abundance levels provide a new tool, enzyme-specific O-isotope fractionation, for investigations of organophosphate metabolism and phosphorus cycling pathways in natural aquatic systems.     

Babbling brook to thunderous torrent: Using sound to monitor river stage

The passive, ambient sound above the water from a river has previously untapped potential for determining flow characteristics such as stage. Measuring sub-aerial sound could provide a new, efficient way to continuously monitor river stage, without the need for in-stream infrastructure. Previous published work has suggested that there might be a relationship between sound and river stage, but the analysis has been restricted to a narrow range of flow conditions and river morphologies. We present a method to determine site suitability and the process of how to record and analyse sound. Data collected along a 500 m length of the River Washburn during July 2019 is used to determine what makes a site suitable for sound monitoring. We found that sound is controlled by roughness elements in the channel, such as a boulder or weir, which influences the sound produced. On the basis of these findings, we collect audio recordings from six sites around the northeast of England, covering a range of flow conditions and different roughness elements, since 2019. We use data from those sites collected during storms Ciara and Dennis to produce a relationship between this sound and river stage. Our analysis has shown a positive relationship between an R² of 0.73 and 0.99 in all rivers, but requires careful site selection and data processing to achieve the best results. We introduce a filter that is capable of isolating a river's sound from other environmental sound. Future work in examining the role of these roughness elements is required to understand the full extent of this technique. By demonstrating that sound can operate as a hydrometric tool, we suggest that sound monitoring could be used to provide cost-effective monitoring devices, either to detect relative change in a river or, after more research, a reliable stage measurement.     

In‐Situ Sonication for Enhanced Recovery of Aquifer Microbial Communities

Sampling methods for characterization of microbial communities in aquifers should target both suspended and attached microorganisms (biofilms). We investigated the effectiveness and reproducibility of low‐frequency (200 Hz) sonication pulses on improving extraction efficiency and quality of microorganisms from a petroleum‐contaminated aquifer in Studen (Switzerland). Sonication pulses at different power levels (0.65, 0.9, and 1.1 kW) were applied to three different groundwater monitoring wells. Groundwater samples extracted after each pulse were compared with background groundwater samples for cell and adenosine tri‐phosphate concentration. Turbidity values were obtained to assess the release of sediment fines and associated microorganisms. The bacterial community in extracted groundwater samples was analyzed by terminal‐restriction‐fragment‐length polymorphism and compared with communities obtained from background groundwater samples and from sediment cores. Sonication enhanced the extraction efficiency up to 13‐fold, with most of the biomass being associated with the sediment fines extracted with groundwater. Consecutive pulses at constant power were decreasingly effective, while pulses with higher power yielded the best results both in terms of extraction efficiency and quality. Our results indicate that low‐frequency sonication may be a viable and cost‐effective tool to improve the extraction of microorganisms from aquifers, taking advantage of existing groundwater monitoring wells.     

Tidal exposure or microhabitats: what determines sandy‐beach nematode zonation? a case study of a macrotidal ridge‐and‐runnel sandy beach in Belgium

Lately, across‐shore zonation has been found to be more important in structuring the nematode community of a tropical macrotidal sandy beach than microhabitat heterogeneity. To evaluate whether this zonation pattern applies to a temperate beach, a macrotidal ridge‐and‐runnels sandy beach in the North Sea was studied. We investigated whether a similar zonation occurs in sandbar and runnel microhabitats, and whether the runnels harbour a different community from the subtidal. Our results indicate that nematode communities from runnel and sandbar habitats are significantly different. In addition, horizontal zonation patterns for nematode communities differ between both habitats. Nematode assemblages from sandbars are divided to lower, middle and upper beach while upper and middle runnels cluster together. The subtidal and upper runnels showed dissimilar nematode assemblages, although runnels showed the same dominant species (Daptonema normandicum), which increases its abundance towards the upper runnels. This study illustrates the importance of microhabitat heterogeneity, which resulted in different zonation patterns across the sandy beach examined. The divergent zonation between sandbars and runnels in the macrotidal temperate sandy beach, compared with the pattern observed for a subtropical sandy beach with similar morphodynamics, indicates that generalizations about nematode distribution patterns should be made with caution.     

Copper in the sediment and sea surface microlayer near a fallowed, open-net fish farm

Sediment and sea surface microlayer samples near an open-net salmon farm in Nova Scotia, were analysed for copper. Copper is a constituent of the feed and is an active ingredient of anti-foulants. The salmon farm was placed in fallow after 15years of production. Sampling was pursued over 27months. Elevated copper concentrations in the sediments indicated the farm site as a source. Bubble flotation due to gas-emitting sediments from eutrophication is a likely process for accumulating copper in the sea surface microlayer at enriched concentrations. Elevated and enriched concentrations in the sea surface microlayer over distance from the farm site led, as a result of wind-drift, to an enlarged farm footprint. The levels of copper in both sediments and sea surface microlayer exceeded guidelines for protection of marine life. Over the 27months period, copper levels persisted in the sediments and decreased gradually in the sea surface microlayer.