Particle Filter-based assimilation algorithms for improved estimation of root-zone soil moisture under dynamic vegetation conditions

In this study, we implement Particle Filter (PF)-based assimilation algorithms to improve root-zone soil moisture (RZSM) estimates from a coupled SVAT-vegetation model during a growing season of sweet corn in North Central Florida. The results from four different PF algorithms were compared with those from the Ensemble Kalman Filter (EnKF) when near-surface soil moisture was assimilated every 3 days using both synthetic and field observations. In the synthetic case, the PF algorithm with the best performance used residual resampling of the states and obtained resampled parameters from a uniform distribution and provided reductions of 76% in root mean square error (RMSE) over the openloop estimates. The EnKF provided the RZSM and parameter estimates that were closer to the truth than the PF with an 84% reduction in RMSE. When field observations were assimilated, the PF algorithm that maintained maximum parameter diversity offered the largest reduction of 16% in root mean square difference (RMSD) over the openloop estimates. Minimal differences were observed in the overall performance of the EnKF and PF using field observations since errors in model physics affected both the filters in a similar manner, with maximum reductions in RMSD compared to the openloop during the mid and reproductive stages.     

Phytoplankton abundance and contributions to suspended particulate matter in the Ohio,Upper Mississippi and Missouri Rivers

Main channel habitats of the Ohio, Missouri, and Upper Mississippi Rivers were surveyed during the summers of 2004, 2005 and 2006 using a probability-based sampling design to characterize inter-annual and inter-river variation in suspended chlorophyll a (CHLa) and related variables. Large (fivefold) differences in CHLa were observed with highest concentrations in the Upper Mississippi (32.3 ± 1.8 μg L⁻¹), intermediate values in the Missouri (19.7 ± 1.1 μg L⁻¹) and lowest concentrations in the Ohio (6.8 ± 0.5 μg L⁻¹). Inter-annual variation was small in comparison to inter-river differences suggesting that basin-specific factors exert greater control over river-wide CHLa than regional-scale processes influencing climate and discharge. The rivers were characterized by variable but generally low light conditions as indicated by depth-averaged underwater irradiance <4 E m⁻² day⁻¹ and high ratios of channel depth to euphotic depth (>3). Despite poor light conditions, regression analyses revealed that TP was the best single predictor of CHLa (R ² = 0.40), though models incorporating both light and TP performed better (R ² = 0.60). Light and nutrient conditions varied widely within rivers and were inversely related, suggesting that riverine phytoplankton may experience shifts in resource limitation during transport. Inferred grazing and sedimentation losses were large yet CHLa concentrations did not decline downriver indicating that growth and loss processes were closely coupled. The contribution by algae to suspended particulate organic matter in these rivers (mean = 41%) was similar to that of lakes (39%) but lower relative to reservoirs (61%).     

On the observational determination of climate sensitivity and its implications

We estimate climate sensitivity from observations, using the deseasonalized fluctuations in sea surface temperatures (SSTs) and the concurrent fluctuations in the top-of-atmosphere (TOA) outgoing radiation from the ERBE (1985–1999) and CERES (2000–2008) satellite instruments. Distinct periods of warming and cooling in the SSTs were used to evaluate feedbacks. An earlier study (Lindzen and Choi, 2009) was subject to significant criticisms. The present paper is an expansion of the earlier paper where the various criticisms are taken into account. The present analysis accounts for the 72 day precession period for the ERBE satellite in a more appropriate manner than in the earlier paper. We develop a method to distinguish noise in the outgoing radiation as well as radiation changes that are forcing SST changes from those radiation changes that constitute feedbacks to changes in SST. We demonstrate that our new method does moderately well in distinguishing positive from negative feedbacks and in quantifying negative feedbacks. In contrast, we show that simple regression methods used by several existing papers generally exaggerate positive feedbacks and even show positive feedbacks when actual feedbacks are negative. We argue that feedbacks are largely concentrated in the tropics, and the tropical feedbacks can be adjusted to account for their impact on the globe as a whole. Indeed, we show that including all CERES data (not just from the tropics) leads to results similar to what are obtained for the tropics alone — though with more noise. We again find that the outgoing radiation resulting from SST fluctuations exceeds the zerofeedback response thus implying negative feedback. In contrast to this, the calculated TOA outgoing radiation fluxes from 11 atmospheric models forced by the observed SST are less than the zerofeedback response, consistent with the positive feedbacks that characterize these models. The results imply that the models are exaggerating climate sensitivity.     

Sulfur biogeochemical cycling and novel Fe-S mineralization pathways in a tidally re-flooded wetland

Sulfur biogeochemical cycling and associated Fe-S mineralization processes exert a major influence over acidity dynamics, electron flow and contaminant mobility in wetlands, benthic sediments and groundwater systems. While S biogeochemical cycling has been studied intensively in many environmental settings, relatively little direct information exists on S cycling in formerly drained wetlands that have been remediated via tidal re-flooding. This study focuses on a tidal wetland that was drained in the 1970s (causing severe soil and water acidification), and subsequently remediated by controlled re-flooding in 2002. We examine reduction rates and Fe-S mineralization at the tidal fringe, 7 years after the commencement of re-flooding. The initial drainage of the wetland examined here caused in-situ pyrite (FeS₂) oxidation, resulting in the drained soil layers being highly acidic and rich in -bearing Fe(III) minerals, including jarosite (KFe₃(SO₄)₂(OH)₆). Tidal re-flooding has neutralized much of the previous acidity, with the pore-water pH now mostly spanning pH 5-7. The fastest rates of in-situ reduction (up to ∼300 nmol cm⁻³ day⁻¹) occur within the inter-tidal zone in the near-surface soil layers (to ∼60 cm below ground surface). The reduction rates correlate with pore-water dissolved organic C concentrations, thereby suggesting that electron donor supply was the predominant rate determining factor. Elemental S was a major short-term product of reduction, comprising up to 69% of reduced inorganic S in the near-surface soil layers. This enrichment in elemental S can be partly attributed to interactions between biogenic H₂S and jarosite - a process that also contributed to enrichment in pore-water Fe²⁺ (up to 55 mM) and (up to 50 mM). The iron sulfide thiospinel, greigite (Fe₃S₄), was abundant in near-surface soil layers within the inter- to sub-tidal zone where tidal water level fluctuations created oscillatory redox conditions. There was evidence for relatively rapid pyrite re-formation within the re-flooded soil layers. However, the results indicate that pyrite re-formation has occurred mainly in the lower formerly drained soil layers, whereas the accumulation of elemental S and greigite has been confined towards the soil surface. The discovery that pyrite formation was spatially decoupled from that of elemental S and greigite challenges the concept that greigite is an essential precursor required for sedimentary pyrite formation. In fact, the results suggest that greigite and pyrite may represent distinct end-points of divergent Fe-S mineralization pathways. Overall, this study highlights novel aspects of Fe-S mineralization within tidal wetlands that have been drained and re-flooded, in contrast to normal, undisturbed tidal wetlands. As such, the long-term biogeochemical trajectory of drained and acidified wetlands that are remediated by tidal re-flooding cannot be predicted from the well-studied behaviour of normal tidal wetlands.     

The effect of methanogenesis on the geochemistry of low temperature water–Fe0–basalt reactions

Hydrogen gas produced in the subsurface from the hydration of mafic rocks is known to be a major energy source for chemolithotrophic life in extreme environments such as hydrothermal vents. The possibility that in situ anaerobic microorganisms present in the deep subsurface are sustained by low temperature H₂-generating water–rock reactions taking place around them is being investigated. Whether the growth and activity of H₂-utilizing microbes directly influences aqueous geochemistry, rates of mineral dissolution, and the chemical composition of the alteration products is also being quantitatively evaluated.To explore how microorganisms are affected by water–rock reactions, and how their activity may in turn affect reaction progress, laboratory experiments have been conducted to monitor the growth of a methanogenic Archaea in the presence of H_2(g) produced from low temperature water–Fe⁰–basalt reactions. In these systems, the conversion of Fe(II) to Fe(III) and subsequent hydrolysis of water is responsible for the production of H_2(g). To characterize key components of the geochemical system, time series measurements of H₂ and CH₄ gas concentrations, Fe and Si aqueous concentrations, and spatially resolved synchrotron-based analyses of microscale Fe distribution and speciation were conducted. Culture experiments were compared with an abiotic control to document changes in the geochemistry both in the presence and absence of the methanogen.In the control abiotic batch experiment, H₂ was continuously produced, until the headspace became saturated, while in the biotic experiments, microbial consumption of H₂ for methanogenesis draws H₂ down and produces CH₄. Purging the headspace gas reinitiates H₂ and CH₄ production in abiotic and culture experiments, respectively. Mass balance analysis of the amount of CH₄ produced suggests that the total H₂ production in microbial experiments does not exceed the abiotic experiment. Soluble Si concentrations, while buffered to relatively constant values, were higher in culture experiments than the abiotic control.Iron_(aq) concentrations appear to respond to perturbations of H₂ and CH₄ gas concentrations in both culture experiments and the abiotic control. A pulse of Fe preceded the rise in either H₂ or CH₄ production, and as the gas concentrations increased the Fe_(aq) decreased. Iron-bearing mineral assemblages change with increasing reaction time and mineral assemblages vary between culture experiments and the abiotic control. These geochemical trends suggest that there are different reaction paths between the culture experiments and the abiotic control.The hydration of mafic rocks is a common geologic reaction and one that has taken place on Earth for the majority of its history and is postulated to occur on Mars. These reactions are important because of their effect on the rheology and geochemistry of the ocean crust. While most often studied at temperatures of ～250 °C, this work suggests that at lower temperatures microorganisms may have a profound effect on what has long been thought to be solely an abiotic reaction, and may produce diagnostic mineral assemblages that will be preserved in the geological record.     

Understanding the fate of iron in a modern temperate estuary: Leirárvogur,Iceland

Fluvial dissolved Fe concentrations decrease upon mixing with seawater, resulting in the formation of Fe-floccules. However, a clear understanding of the fate of these floccules has yet to be established. Assessing how tidal processes affect the formation of Fe-colloids in the Leirárvogur estuary, SW Iceland, is an important step in understanding the formation and potential deposition of estuarine Fe-rich minerals within this estuarine system. The Leirárvogur estuary drains predominately Fe-rich basalt, increasing the likelihood of detecting changes in Fe-phases. Fluvial waters and local lake waters that drain into the estuary were compared and the effects of seasonal changes were considered, in an attempt to understand how varying end-members and external factors play a role in Fe-rich mineral formation. Aqueous and colloidal Fe concentrations were found to be greater towards the head of the Leirárvogur estuary, suggesting that potential Fe-rich minerals and complexes are forming at sites of fluvial input. Increasing suspended colloidal Fe towards the estuary mouth suggests that Fe-colloids are readily transported seaward.     

Temporal association of arc–continent collision,progressive magma contamination in arc volcanism and formation of gold-rich massive sulphide deposits on Wetar Island (Banda arc)

Whole-rock ⁸⁷Sr/⁸⁶Sr and δ¹⁸O analyses of volcanic rocks and ³He/⁴He analyses of sulphides and sulphates from mineralized rocks on Wetar, Indonesia indicate a variable contribution of assimilated crustal material or sediment sourced from the subducted Australian craton to the south. These new data support the idea of progressive source contamination with precisely dated events showing that Wetar Island hosts the most extreme examples of crustal assimilation in the region. The increased continental contamination occurs during the Pliocene (Zanclian to Piacenzian) during distinct magmatic events between 5 and 4 Ma, and at 2.4 Ma when ⁸⁷Sr/⁸⁶Sr ratios in unaltered lavas, with whole-rock δ¹⁸O values between 5.7 and 9.6‰, increase from 0.707484 to extreme radiogenic values of 0.711656.The earlier of these magmatic events is important in the generation of the hydrothermal systems responsible for the mineralization recorded on Wetar. Samples from this yield radiogenic ³He/⁴He ratios between 0.5 and 1.4 R/R_A, similar to the data from volcanic rocks on nearby Romang. The later magmatic event coincides with the arrival of the Australian Continental Margin at the subduction zone along the Banda arc. Progressive incorporation of continental-sourced components into the source region below the Wetar Island edifice coincides with the formation of gold-rich volcanogenic massive sulphide deposits hosted within the contaminated volcanic pile.     

Comparison of quantitative petrographic, stable isotope and cathodoluminescence data for fingerprinting Czech marbles

Various marbles from both historic quarries and historical artefacts of the Czech Republic were examined in order to make determinations of their provenance. The methodology used was based upon a combination of petrographic image analysis (PIA) of thin sections, stable isotope geochemistry of carbonates, and cathodoluminescence. Multivariate statistical methods (i.e. cluster analysis and discriminant analysis) confirmed the geoscientific relevance of the marble’s different characteristics with a high degree of consistency as well as the enhanced significance of stable C and O isotopes in correlation with the petrographic data. The qualitative cathodoluminescence data provided a useful additional tool to help recognise the fingerprinting of marbles with similar petrographic and/or geochemical characteristics.     

Pravčice Rock Arch (Bohemian Switzerland National Park, Czech Republic) deterioration due to natural and anthropogenic weathering

The dominant factors affecting the development of weathering forms on the Prav?ice Rock Arch (PRA) (Bohemian Switzerland National Park, Czech Republic) are discussed, based on the in situ monitoring of weathering forms, as well as on laboratory studies of materials taken from this site. The in situ monitoring shows the progressive development of distinct weathering forms (delamination of case-hardened rock surfaces, cyclic efflorescence, and granular disintegration of exposed weakly cemented rock mass) in specific portions of the PRA, whose location is controlled by lithology, jointing/local hydrodynamics, and exposure to climatic factors. From the analysis of efflorescence, the dominance of sulphates is evident; particularly of gypsum and alums. However, the synergistic effects of the several salt species (that also include minor nitrates and chlorides) upon the mechanical disintegration of sandstone can be expected.