NPZ Models of Plankton Dynamics: Their Construction, Coupling to Physics, and Application

Nutrient-phytoplankton-zooplankton (NPZ) models have been in use in oceanography for at least three decades, and are still a common research tool. Given the discoveries of the last two decades, particularly concerning the role of bacteria in the plankton, there are questions as to whether NPZ models can still be supported as a useful tool in planktonic research. Here I review the construction of NPZ models, and some of the physical platforms they have been coupled to. I then discuss the applications of NPZ-physical models, and conclude that they still constitute an important and viable research tool, provided that the questions being explored are clearly stated. This revised version was published online in August 2006 with corrections to the Cover Date.     

Algorithm for HF radar vector current measurements

A new algorithm is proposed, called the stream function method (SFM) for producing vector current maps from radial data measured by dual-site high frequency surface wave radar (HFSWR). In SFM, a scalar stream function is constructed under some oceanographic assumptions. The function describes the two-dimensional (2-D) ocean surface water motion and is used to obtain the distribution of vector currents. The performance of SFM is evaluated using simulated radial data, which demonstrates that SFM has advantages over typical vectorial combination methods (VCM) both in error acceptance and robustness, and excels another method based on least-squares fitting (LSF) in recovering the complicated current models. Furthermore, SFM is capable of providing the total currents based on radials from single-site radar. We also test the assumptions of horizontal non-divergence in the simulation. The new algorithm is applied to the field experiment data of Wuhan University’s ocean state measuring and analyzing radar (OSMAR), collected in the coastal East China Sea during April 11–17, 2004. Quantitative comparisons are given between radar results by three current algorithms and in-situ current meter measurements. Preliminary analysis of the vertical current shear is given based on the current meter measurements.     

Tectonic core of a sedimentary drift: a potential ridge propagation feature beneath the Blake Outer Ridge

The Blake Outer Ridge is a 480–kilometer long linear sedimentary drift ridge striking perpendicular to the North American coastline. By modeling free-air gravity anomalies we tested for the presence of a crustal feature that may control the location and orientation of the Blake Outer Ridge. Most of our crustal density models that match observed gravity anomalies require an increase in oceanic crustal thickness of 1–3 km on the southwest side of the Blake Outer Ridge relative to the northeast side. Most of these models also require 1–4 km of crustal thinning in zone 20–30 km southwest of the crest of the Blake Outer Ridge. Although these features are consistent with the structure of oceanic fracture zones, the Blake Outer Ridge is not parallel to adjacent known fracture zones. Magnetic anomalies suggest that the ocean crust beneath this feature formed during a period of mid-ocean ridge reorganization, and that the Blake Outer Ridge may be built upon the bathymetric expression of an oblique extensional feature associated with ridge propagation. It is likely that the orientation of this trough acted as a catalyst for sediment deposition with the start of the Western Boundary Undercurrent in the mid-Oligocene.     

Jellyfish patch formation investigated by aerial photography and drifter experiment

Jellyfish patch formation is investigated by conducting a drifter experiment combined with aerial photography of a sustained patch of the moon jellyfish in Hokezu Bay, Japan. Jellyfish patches are aggregations of individuals that are caused by a combination of swimming (active influence) and advection by currents (passive influence). The drifter experiment involved the injection of 49 drifters around a distinct surface patch of jellyfish within an area of approximately 300 m × 300 m. The drifters’ motion, caused only by the passive influence, was recorded in a series of 38 aerial photographs taken over approximately 1 h. The ambient uniform current field larger than the patch scale was estimated from the movement of the centroid position of drifters, while the distribution of horizontal divergence and relative vorticity around the patch was estimated from the time-derivative in areas of triangles formed by the drifters. The centroid positions of both drifters and patches moved stably toward the bay head at different speeds. The difference vector between the patch and drifter centroids was directed to the sun, and was opposite to the ambient current. The distributions of vorticity and divergence around patches exhibited inhomogeneity within the patch scale, and the drifters in this nonuniform current field aggregated near the convergence area within 1 h. The results suggest that horizontal patch formation is predominantly influenced by passive factors at the surface of Hokezu Bay. Furthermore, the upward swimming against downwelling may make sustained patch in surface layer.     

Biodiversity of meiofauna in the intertidal khe nhan mudflat,can gio mangrove forest,vietnam with special emphasis on free living nematodes

The ecological aspect of meiofaunal communities in Can Gio mangrove forest, Ho Chi Minh city, Vietnam has not been investigated before. The composition, distribution, density and biodiversity of meiofaunal communities were studied along an intertidal transect at the Khe Nhan mudflat. Each time, three replicate samples were collected in four stations along a transect following the water line from low tide level up to the mangrove forest edge. In total, 18 meiofaunal taxa were found with the dominant taxa belonging to Nematoda, Copepoda, Sarcomastigophora and Polychaeta. The densities of meiofauna ranged from 1156 inds/10 cm² to 2082 inds/10 cm². The increase in densities from the mangrove forest edge towards the low water line was significant. Along the mudflat transect, the biodiversity (expressed by different indices) was relatively high at different taxonomic levels but did not vary significantly along the mudflat except for taxa richness. Eighty nematode genera belonging to 24 families with Comesomatidae having the highest abundance 33.8 % were found.Theristus andNeochromadora decreased in densities from the lower water line towards the mangrove forest edge, whileParacomesoma andHopperia are typical and more abundant at the middle of the mudflat.Halalaimus increased from high on the mudflat to the low water line.     

Observations of the Labrador Sea eddy field

This paper is an observational study of small-scale coherent eddies in the Labrador Sea, a region of dense water formation thought to be of considerable importance to the North Atlantic overturning circulation. Numerical studies of deep convection emphasize coherent eddies as a mechanism for the lateral transport of heat, yet their small size has hindered observational progress. A large part of this paper is therefore devoted to developing new methods for identifying and describing coherent eddies in two observational platforms, current meter moorings and satellite altimetry. Details of the current and water mass structure of individual eddy events, as they are swept past by an advecting flow, can then be extracted from the mooring data. A transition is seen during mid-1997, with long-lived boundary current eddies dominating the central Labrador Sea year-round after this time, and convectively formed eddies similar to those seen in deep convection modeling studies apparent prior to this time. The TOPEX / Poseidon altimeter covers the Labrador Sea with a loose “net” of observations, through which coherent eddies can seem to appear and disappear. By concentrating on locating and describing anomalous events in individual altimeter tracks, a portrait of the spatial and temporal variability of the underlying eddy field can be constructed. The altimeter results reveal an annual “pulsation” of energy and of coherent eddies originating during the late fall at a particular location in the boundary current, pinpointing the time and place of the boundary current-type eddy formation. The interannual variability seen at the mooring is reproduced, but the mooring site is found to be within a localized region of greatly enhanced eddy activity. Notably lacking in both the annual cycle and interannual variability is a clear relationship between the eddies or eddy energy and the intensity of wintertime cooling. These eddy observations, as well as hydrographic evidence, suggest an active role for boundary current dynamics in shaping the energetics and water mass properties of the interior region.     

Particle transport from the West African shelves of Liberia and Sierra Leone to the deep sea: A chemical approach

The chemical and mineralogical composition of suspended particle suites has been used to assess off-shelf transport on the West African shelves of Liberia and Sierra Leone. Using the ratios of Si/Al, Fe/Al, Mg/Al and Mn/Al as tracers, it was possible to detect shelf-derived materials in slope waters. In the majority of cases, these inputs could not have been detected using particle mass or light scattering measurements and could only be measured by using the chemical signatures of the particulate matter. At the time of sampling, the suspensate which had been moved seaward over the slope was detected adjacent to submarine canyons and highly turbid areas on the outer shelf. The chemical and mineralogical composition of the suspensates, and sediments in the adjacent eastern Atlantic basin are similar to those found in the water column seaward of the West African continental shelves and yet distinct from the Sahelian dust which is considered the major source of sedimentary material for the tropical and semi-tropical areas of the deep eastern basin. These findings suggest that materials from this shelf area could be a more important input to the deep sea than was previously realised.     

Basement imaging with Side-Looking Seismics

The multistreamer Side-Looking Seismic system presented in this paper makes a sonograph of uncovered or buried crustal topography, thus revealing the structural fabric of the oceanic basement, even when this is covered with a sedimentary layer. Major elements of the system are an airgun as a sound source, five single-channel parallel streamers and two minicomputers for signal capture and processing.The system is used simultaneously for enhanced single-channel seismic profiling and for side-looking seismics. A vertical section with an improved signal-to-noise ratio and a suppression of side-echoes is produced on a digital seismic recorder. Primary side-looking seismic output in the form of 5 profiles with different angles of incidence is obtained within 10 seconds. This part of the processing can be done in real time.In sediment-covered areas the low frequencies used cause the slanted profiles (the side beams in the primary output) to be side-looking sonar images of buried topography. The projection process yielding final side-looking output corrects for slant range deformation caused by the water column and, if necessary, for deformation caused by refraction within the sedimentary column. The result approaches a conformal map of the structure of the traversed basement. Swath width is mainly determined by water depth and refraction effects in the sediment. In Madeira abyssal plain a swath width of 8000 m was attained in a water depth of 5000 m.Within the swath, oceanic basement structures are recognized in the form of elongate more or less parallel reflectors. They are interpreted as buried spreading topography. The lack of side-echoes within fracture zones combined with typical wall signatures can be used to trace fracture zones. These features are demonstrated for an area in Madeira abyssal plain.     

Petroleum hydrocarbons in sediments of Southampton water estuary

The sediments of Southampton Water were analysed for petroleum hydrocarbons to determine the fate of petrochemical refinery waste in the estuary. Much of the petroleum hydrocarbons appears to be removed by adsorption onto estuarine sediments close to source. Surface sediment concentrations range from 3·1mg/g dry weight near a refinery to 0·5 mg/g dry weight at locations distant from the refinery.The absence of any change with depth in total hydrocarbon concentrations from some sediment cores and the presence of distinct ‘oil’ horizons in others suggests that mixing of sediments in the area is very random. Sedimentation rates in areas where a distinct oil horizon was observed ranged from 1 to 3cm a year.