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A combined paleolimnological/genetic analysis of diatoms reveals divergent evolutionary lineages of Staurosira and Staurosirella (Bacillariophyta) in Siberian lake sediments along a latitudinal transect

Diatom diversity in lakes of northwest Yakutia (Siberia) was investigated by microscopic and genetic analysis of surface and cored lake sediments, to evaluate the use of sedimentary DNA for paleolimnological diatom studies and to identify obscure genetic diversity that cannot be detected by microscopic methods. Two short (76 and 73 bp) and one longer (577 bp) fragments of the ribulose 1,5-bisphosphate carboxylase/oxygenase (rbcL) gene, encoding the large subunit of the rbcL, were used as genetic markers. Diverse morphological assemblages of diatoms, dominated by small benthic fragilarioid taxa, were retrieved from the sediments of each lake. These minute fragilarioid taxa were examined by scanning electron microscopy, revealing diverse morphotypes in Staurosira and Staurosirella from the different lakes. Genetic analyses indicated a dominance of haplotypes that were assigned to fragilarioid taxa and less genetic diversity in other diatom taxa. The long rbcL_577 amplicon identified considerable diversification among haplotypes clustering within the Staurosira/Staurosirella genera, revealing 19 different haplotypes whose spatial distribution appears to be primarily related to the latitude of the lakes, which corresponds to a vegetation and climate gradient. Our rbcL markers are valuable tools for tracking differences between diatom lineages that are not visible in their morphologies. These markers revealed putatively high genetic diversity within the Staurosira/Staurosirella species complex, at a finer scale than is possible to resolve by microscopic determination. The rbcL markers may provide additional reliable information on the diversity of barely distinguishable minute benthic fragilarioids. Environmental sequencing may thus allow the tracking of spatial and temporal diversification in Siberian lakes, especially in the context of diatom responses to recent environmental changes, which remains a matter of controversy.     

Transport and Variability of Fecal Bacteria in Carbonate Conglomerate Aquifers

Clastic sedimentary rocks are generally considered non‐karstifiable and thus less vulnerable to pathogen contamination than karst aquifers. However, dissolution phenomena have been observed in clastic carbonate conglomerates of the Subalpine Molasse zone of the northern Alps and other regions of Europe, indicating karstification and high vulnerability, which is currently not considered for source protection zoning. Therefore, a research program was established at the Hochgrat site (Austria/Germany), as a demonstration that karst‐like characteristics, flow behavior, and high vulnerability to microbial contamination are possible in this type of aquifer. The study included geomorphologic mapping, comparative multi‐tracer tests with fluorescent dyes and bacteria‐sized fluorescent microspheres, and analyses of fecal indicator bacteria (FIB) in spring waters during different seasons. Results demonstrate that (1) flow velocities in carbonate conglomerates are similar as in typical karst aquifers, often exceeding 100 m/h; (2) microbial contaminants are rapidly transported toward springs; and (3) the magnitude and seasonal pattern of FIB variability depends on the land use in the spring catchment and its altitude. Different groundwater protection strategies that currently applied are consequently required in regions formed by karstified carbonatic clastic rocks, taking into account their high degree of heterogeneity and vulnerability.     

Accounting for carbon dioxide emissions from international shipping: Burden sharing under different UNFCCC allocation options and regime scenarios

CO₂ emissions from international shipping, which are currently unregulated, are predicted to rise dramatically if no regulations are implemented. International bunker fuel emissions have been excluded from the Kyoto Protocol; the UNFCCC conference in Copenhagen also failed to bring about clear directions on how to proceed with these emissions.     

Interannual variability of deep convection in the Northwestern Mediterranean simulated with a coupled AORCM

A hindcast experiment of the Mediterranean present-day climate is performed using a fully-coupled Atmosphere–Ocean Regional Climate Model (AORCM) for the Mediterranean basin. The new model, called LMDz-NEMO-Med, is composed of LMDz4-regional as atmospheric component and of NEMOMED8 as oceanic component. This AORCM equilibrates freely, without any flux adjustment, neither in fresh water nor in heat. At its atmospheric lateral boundary conditions, it is driven by ERA-40 data from 1958 to 2001, after a spin-up of 40 years in coupled configuration. The model performance is assessed and compared with available observational datasets. The model skill in reproducing mean state and inter-annual variability of main atmospheric and oceanic surface fields is in line with that of state-of-the-art AORCMs. Considering the ocean behaviour, the inter-annual variations of the basin-scale heat content are in very good agreement with the observations. The model results concerning salt content could not be adequately validated. High inter-annual variability of deep convection in the Gulf of Lion is simulated, with 53 % of convective winters, representative of the present climate state. The role of different factors influencing the deep convection and its inter-annual variability is examined, including dynamic and hydrostatic ocean preconditioning and atmospheric surface forcing. A conceptual framework is outlined and validated in linking the occurrence of deep convection to the efficiency of the integrated surface buoyancy fluxes along the winter season to mix the initially stratified averaged water column down to the convective threshold depth. This simple framework (based only on 2 independent variables) is able to explain 60 % (resp. 69 %) of inter-annual variability of the deep water formation rate (resp. maximum mixed layer depth) for the West Mediterranean Deep Water (WMDW) formation process.