Development of two novel CYP-antibodies and their use in a PCB exposure experiment with Mytilus edulis

In an attempt to learn more about the cytochrome P450 (CYP) system of mussels, we used protein databases and alignment software to extract highly conserved CYP sequences. From these alignments synthetic peptides were produced and used for rabbit immunisation, which yielded polyclonal antibodies against the CYP families 2 and 4. The antibodies were evaluated with Western Blot and ELISA assays, using digestive gland microsomal samples from the mussel Mytilus edulis. Western Blots revealed immunoreactions for both antibodies. The anti-CYP2 sequence rendered one major immunopositive protein of approximately 49 kDa size, and weak signals for proteins of approximately 41 and 56 kDa size. The anti-CYP4 sequence rendered two major bands of approximately 56 and 59 kDa size, and also a weak immunoreaction with a protein of approximately 43 kDa size. ELISA rendered only weak signals even with a 1:50 dilution of IgG-purified serum. A 10-day exposure to Aroclor 1254 did not appear to affect any of the immunopositive proteins, while total PCBs in soft bodies increased from 14-40 ng/g DW in controls to 373-638 ng/g DW in exposed mussels.     

Seasonal variations of water system distribution and flow patterns in the southern sea area of Hokkaido,Japan

Hydrographic data and composite current velocity data (ADCP and GEK) were used to examine the seasonal variations of upper-ocean flow in the southern sea area of Hokkaido, which includes the “off-Doto” and “Hidaka Bay” areas separated by Cape Erimo. During the heating season (April–September), the outflow of the Tsugaru Warm Current (TWC) from the Tsugaru Strait first extends north-eastward, and then one branch of TWC turns to the west along the shelf slope after it approaches the Hidaka Shelf. The main flow of TWC evolves continuously, extending eastward as far as the area off Cape Erimo. In the late cooling season (January–March), part of the Oyashio enters Hidaka Bay along the shallower part of the shelf slope through the area off Cape Erimo, replacing almost all of the TWC water, and hence the TWC devolves. It is suggested that the bottom-controlled barotropic flow of the Oyashio, which may be caused by the small density difference between the Oyashio and the TWC waters and the southward migration of main front of TWC, permits the Oyashio water to intrude along the Hidaka shelf slope.     

Atmospheric forcing of fine-sand transport on a low-energy inner shelf: south-central Louisiana,USA

Hydrodynamic and sediment transport measurements from instrumentation deployed during a 54-day winter period at two sites on the Louisiana inner shelf are presented. Strong extratropical storms, with wind speeds of 7.8 to 15.1 m s^-1, were the dominant forcing mechanism during the study. These typically caused mean oscillatory flows and shear velocities about 33% higher than fair weather (averaging 12.3 and 3.2 cm s^-1 at the landward site, and 11.4 and 2.7 cm s^-1 at the seaward site, respectively). These responses were coupled with mean near-bottom currents more than twice as strong as during fair weather (10.3 and 7.5 cm s^-1 at the landward and seaward sites, respectively). These flowed in approximately the same direction as the veering wind, causing a net offshore transport of fine sand. Weak storms were responsible for little sediment transport whereas during fair weather, onshore sand transport of approximately 25-75% of the storm values appears to have occurred. This contradicts previous predictions of negligible fair-weather sediment movement on this inner shelf.     

Tectonic control over topography and channel sedimentation across the forearc slope of the southern Kurile Trench

A high-resolution seismic survey covering more than 2,000 km² has revealed the processes responsible for the slope morphology and channel sedimentation across the forearc slope-basin of the Kurile Arc–NE Japan Arc collision zone, offshore from Tokachi (Hokkaido, Japan). The dominant slope contours parallel the trench but, in the middle and lower reaches of the southern slope, contours are convex-shaped with an offshore trend. This sector of the slope is traversed diagonally by the Hiroo submarine channel. The offshore-trending convex contours and the channel course have developed through the interplay of tectonic and sedimentary processes, including the development of anticlines, anticline-induced lobe sedimentation and channel avulsion. In its upper reaches, the channel is restricted by a topographic low associated with NNW–SSE-trending anticlines which developed within the upper and middle slope sectors during late Miocene uplift. The uplift timing and trend of these anticlines indicate that they resulted from collision, the channel sedimentology and slope morphology of the middle and lower slopes having been influenced by Pliocene uplift of NE–SW-trending anticlines. The trends of these anticlines parallel those of the Kurile Trench. The Pliocene and early Pleistocene strata of the middle and lower slopes consist of ponded lobe sediments deposited along the palaeo-Hiroo submarine channel on the landward side of the anticlines. As a lobe pile accumulated, the channel thalweg shifted to the north of the stack, allowing the channel to bypass the topographic high formed by the growing stack. Thick levee deposits built up along the channel course during the late Pleistocene and Holocene. These levees, along with the Pliocene and early Pleistocene lobes, are reflected in the present-day sigmoid-shaped, convex offshore-trending contours. Thus, the interplay of subduction- and collision-related anticlines, tectonic-related channel ponding, and avulsion has contributed to the slope morphology of the southern Kurile Trench.     

Bathymetry of Molloy Deep: Fram Strait between Svalbard and Greenland

The sea floor of Fram Strait, the over 2500 m deep passage between the Arctic Ocean and the Norwegian-Greenland Sea, is part of a complex transform zone between the Knipovich mid-oceanic ridge of the Norwegian-Greenland Sea and the Nansen-Gakkel Ridge of the Arctic Ocean. Because linear magnetic anomalies formed by sea-floor spreading have not been found, the precise location of the boundary between the Eurasian and the North American plate is unknown in this region. Systematic surveying of Fram Strait with SEABEAM and high resolution seismic profiling began in 1984 and continued in 1985 and 1987, providing detailed morphology of the Fram Strait sea floor and permitting better definition of its morphotectonics. The 1984 survey presented in this paper provided a complete set of bathymetric data from the southernmost section of the Svalbard Transform, including the Molloy Fracture Zone, connecting the Knipovich Ridge to the Molloy Ridge; and the Molloy Deep, a nodal basin formed at the intersection of the Molloy Transform Fault and the Molloy Ridge. This nodal basin has a revised maximum depth of 5607 m water depth at 79°8.5N and 2°47E.     

Remote estimation of surficial seafloor properties through the application Angular Range Analysis to multibeam sonar data

The variation of the backscatter strength with the angle of incidence is an intrinsic property of the seafloor, which can be used in methods for acoustic seafloor characterization. Although multibeam sonars acquire backscatter over a wide range of incidence angles, the angular information is normally neglected during standard backscatter processing and mosaicking. An approach called Angular Range Analysis has been developed to preserve the backscatter angular information, and use it for remote estimation of seafloor properties. Angular Range Analysis starts with the beam-by-beam time-series of acoustic backscatter provided by the multibeam sonar and then corrects the backscatter for seafloor slope, beam pattern, time varying and angle varying gains, and area of insonification. Subsequently a series of parameters are calculated from the stacking of consecutive time series over a spatial scale that approximates half of the swath width. Based on these calculated parameters and the inversion of an acoustic backscatter model, we estimate the acoustic impedance and the roughness of the insonified area on the seafloor. In the process of this inversion, the behavior of the model parameters is constrained by established inter-property relationships. The approach has been tested using a 300 kHz Simrad EM3000 multibeam sonar in Little Bay, NH. Impedance estimates are compared to in situ measurements of sound speed. The comparison shows a very good correlation, indicating the potential of this approach for robust seafloor characterization.     

4D seismic time-lapse monitoring of an active cold vent,northern Cascadia margin

Two single-channel seismic (SCS) data sets collected in 2000 and 2005 were used for a four-dimensional (4D) time-lapse analysis of an active cold vent (Bullseye Vent). The data set acquired in 2000 serves as a reference in the applied processing sequence. The 4D processing sequence utilizes time- and phase-matching, gain adjustments and shaping filters to transform the 2005 data set so that it is most comparable to the conditions under which the 2000 data were acquired. The cold vent is characterized by seismic blanking, which is a result of the presence of gas hydrate in the subsurface either within coarser-grained turbidite sands or in fractures, as well as free gas trapped in these fracture systems. The area of blanking was defined using the seismic attributes instantaneous amplitude and similarity. Several areas were identified where blanking was reduced in 2005 relative to 2000. But most of the centre of Bullseye Vent and the area around it were seen to be characterized by intensified blanking in 2005. Tracing these areas of intensified blanking through the three-dimensional (3D) seismic volume defined several apparent new flow pathways that were not seen in the 2000 data, which are interpreted as newly generated fractures/faults for upward fluid migration. Intensified blanking is interpreted as a result of new formation of gas hydrate in the subsurface along new fracture pathways. Areas with reduced blanking may be zones where formerly plugged fractures that had trapped some free gas may have been opened and free gas was liberated.     

Phytoplankton biomass and size fractions in surface waters of the Australian sector of the southern ocean

We collected surface water along the 142nd E meridian from Tasmania to Antarctica in December 1999. We measured temperature, salinity and total chlorophyll a; additionally, we collected suspended particle size fractions and used fluorometric analysis to determine the quantity of chlorophyll a in each of four cell size classes: picoplankton (<3 μm), two nanoplankton fractions (3–10 μm and 10–20 μm) and microplankton (> 20 μm). Changes in temperature and salinity show that we crossed 6 water masses separated by 5 fronts. We found low abundance (<0.2 mg m⁻³) of chlorophyll in all size classes, with the exception of higher values near the continent (0.2 to 0.4 mg m⁻³). Lowest chlorophyll values (<0.1 mg m⁻³) were found in the Polar Frontal Zone (51° to 54°S). Microplankton made up the largest portion of total chlorophyll throughout most of the region. We conclude that biomass of all phytoplankton fractions, especially pico-and nanoplankton, was constrained by limiting factors, most probably iron, throughout the region and that ecosystem dynamics within a zone are not circumpolar but are regionalized within sectors.     

Quaternary evolution of the Gulf of İzmit (NW Turkey): a sedimentary basin under control of the North Anatolian Fault Zone

The Quaternary evolution of the Gulf of İzmit, situated on the tectonically active North Anatolian Fault Zone (NAFZ), was investigated using seismic reflection, paleontologic, and sediment textural data. On the basis of seismic stratigraphic and sedimentologic-paleontologic interpretations, four depositional units were distinguished within the Plio-Quaternary sequence of the Gulf of İzmit. According to these data, Plio-Quaternary deposits supplied from the northern terrestrial area started to accumulate during a progradational phase, in a south-facing half-graben. A coarse-grained sedimentary unit prograding into the gulf from the south since 200 ka b.p. indicates a dramatic variation in the evolution of the gulf, with the initiation of a new strike-slip fault of the NAFZ and a corresponding uplift of the Armutlu Peninsula in the south of the gulf. During the evolution of this fault from a wide shear zone consisting of right-stepped strike-slip faults and pull-apart basins to a localized principal fault zone, sediments were deposited under the influence of northerly prograding terrestrial and shallow-marine conditions due to relative sea-level fluctuations in the Marmara Sea. During this period, the Gulf of İzmit was invaded mainly by Mediterranean and partly by Black Sea waters. In the latest glacial period, shallow areas in the gulf became subaerially exposed, whereas the central and western sub-basins of the gulf turned into lakes. The present evolution of the Gulf of İzmit is controlled by the after effects of the new rupture of the NAFZ and the estuarine nature of the gulf environment.