Methods Comparison for Microsatellite Marker Development： Different Isolation Methods, Different Yield Efficiency

Microsatellite markers have become one kind of the most important molecular tools used in various researches. A large number of microsatellite markers are required for the whole genome survey in the fields of molecular ecology, quantitative genetics and genomics. Therefore, it is extremely necessary to select several versatile, low-cost, efficient and time- and labor-saving methods to develop a large panel of microsatellite markers. In this study, we used Zhikong scallop (Chlamys farreri) as the target species to compare the efficiency of the five methods derived from three strategies for microsatellite marker development. The results showed that the strategy of constructing small insert genomic DNA library resulted in poor efficiency, while the microsatellite-enriched strategy highly improved the isolation efficiency. Although the mining public database strategy is time- and cost-saving, it is difficult to obtain a large number of microsatellite markers, mainly due to the limited sequence data of non-model species deposited in public databases. Based on the results in this study, we recommend two methods, microsatellite-enriched library construction method and FIASCO-colony hybridization method, for large-scale microsatellite marker development. Both methods were derived from the mi-crosatellite-enriched strategy. The experimental results obtained from Zhikong scallop also provide the reference for microsatellite marker development in other species with large genomes.     

NUFFT-Based Iterative Reconstruction Algorithm for Synthetic Aperture Imaging Radiometers

Synthetic aperture imaging radiometers (SAIRs) are powerful sensors for high-resolution observation of the Earth at low microwave frequencies. However, the future application of this new technology is limited by its large number of element antennas and receiving channels. In order to further reduce the complexity of the whole system, the circular and rotating array configurations have been proposed. Their disadvantages lie primarily in more complicated image reconstruction, because the conventional fast Fourier transform (FFT) method could not be used directly for image reconstruction. This letter introduces an iterative method for the reconstruction of radiometric brightness temperature maps from nonuniform visibility function samples. This method combines the conjugate gradient algorithm with min-max nonuniform FFT approach, which has been shown to provide considerably improved image quality relative to the traditional gridding method. Simulations for SAIRs were performed and showed better image quality in comparison to the traditional frequency interpolation method.     

Pristine or altered: low-Mg calcite shells survived from massive dolomitization? A case study from Miocene carbonates

Low-Mg calcite shells have been widely used to reconstruct the chemistry of ancient seawater. There is always a question: are the shells chemically pristine? This paper presents the isotope and elemental geochemistry of low-Mg calcite bivalve shells in late Miocene platform carbonates, SE Spain. The platform carbonates were extensively dolomitized, and limestone is restricted to older stratal units, and to units mainly in topographically higher and more landward strata. Low-Mg calcite oyster shells were completely dissolved out in the basinward dolomite, but are well preserved in the limestone. These shells appear to retain the original growth microstructures, based on hand samples. Under the microscope, however, dissolution and recrystallization, as well as pristine growth lines are all present. Sr isotopes in these shells range from that of normal Miocene seawater to radiogenic values. δ¹⁸O and δ¹³C values, and Mg, Sr, and Na concentrations in these shells are rather variable. The high end members are consistent with the typical values of modern/late Miocene normal-seawater low-Mg calcite shells, whereas the low end members are close to those of diagenetic calcite cements, which have low δ¹⁸O, δ¹³C, Sr and Na values, and radiogenic Sr. The Nijar shells were altered physically and chemically to different degrees by diagenesis, although these shells are consistent with some “criteria” of unalteration. The isotopic and trace-element data collected in altered and pristine (or less altered) portions coexisting in the same shells are clearly differentiable. Quantitative simulation of covariations of geochemical pairs indicates that solid mixing of unaltered and altered portions by sampling is consistent with the variations in isotopic and elemental data recorded in the Nijar shells. The geological significance of this study is that ancient fabric-retentive calcite shells may have been altered geochemically although they may appear pristine. Calcite shells that underwent intensive diagenesis should be examined rigorously under the microscope, coupled with investigations of multiple geochemical proxies to assess chemical alteration. Only the data of unaltered shells can be used to reconstruct the chemistry of ancient seawater.     

花鲈皮肤溃疡病抗性和敏感群体的RAPD分析

采用随机扩增多态性DNA技术,对花鲈(Lateolabrax japonicus)皮肤溃疡病抗性和敏感两个群体的遗传多样性进行了研究.从100个10 bp随机引物中筛选出25个随机引物,在两个群体中共扩增了326个位点,抗性群体多态住点比率为44.24%,遗传变异度为0.123 7,Shannon多样性值为0.1149,分别比敏感群体高3.87%,5.82%和2.68%,表明花鲈抗病群体比敏感群体具有更丰富的遗传多样性.25条随机引物中,7条引物在两群体中的扩增结果存在差异,其中S11,S15,S4,S414,S416,S9在抗性群体的扩增结果比敏感群体多1个多态住点,S52多2个多态位点.在这8个特异多态位点中,S52-1,S4-1,S414-6,S9-2在敏感群体中全部出现,呈单态性;S15-5,S11-6,S416-6,S52-5只在抗性群体中出现,出现频率分别为38.5%,30.8%,23.1%和23.1%.说明这8个位点在两群体中存在较大的差异.研究表明,花鲈皮肤溃疡病在遗传上是比较复杂的,并不是简单地与某个遗传标记有关,可能与多个遗传因素相关.     

椒江口潮间带大型底栖动物群落beta多样性分析

于2007年10月在椒江口共布设6条潮间带采样断面,每条断面在中潮带上区、中区、下区和低潮区各设1站位进行大型底栖动物采样。分析了不同采样站位数与大型底栖动物种数的关系,选用Wilson-Shmidabeta多样性测度方法,对以下3种空间环境梯度下大型底栖动物群落beta多样性进行了研究:(1)断面内垂直环境梯度;(2)河流到海洋的环境梯度;(3)河口两岸间的距离梯度。分析了不同采样站位数对群落beta多样性指数的影响,结果显示:(1)随着采样站位数的增加,物种数呈增加趋势但增速渐慢,同时beta多样性指数呈下降趋势;(2)不同的潮区间隔下的be-ta多样性指数均有显著差异;(3)在北岸和南岸,随着断面间距的增加beta多样性指数均呈升高趋势,而且与各断面的沉积物粒度、油类含量呈显著相关;(4)椒江口为喇叭形河口,随着河口两岸断面距离的增加beta多样性指数呈升高趋势。     

一种污水排海的近远区计算与控制方法──以大亚湾水容量计算及污水排海为例

针对点容量计算中混合区限制的要求，采用了动量积分法、经验公式法和有限差分法，分别对污水排放后可能引起的近区、过渡区和远区的污水浓度变化进行了模拟预测，并就一定的限制性条件对容量点近区、高浓度混合区及容量点远区影响范围进行了分析。在大亚湾水容量计算及污水排海规划中的应用表明，该法具有计算机时较省、精度相对较高等优点。     

银纳米杆高温熔化断裂弛豫性能的原子级模拟研究

采用分子动力学模拟方法,研究了不同长度银纳米杆在不同温度弛豫过程中的结构演变过程.结果表明:银纳米杆存在一与杆长相关的临界熔断温度,该临界熔断温度随杆长增加而显著降低.当温度大于熔点而小于临界熔断温度时,体系形成一个高度无序的球形团簇,而温度大于临界熔断温度时,体系则熔断成两个球形团簇.并给出了银纳米杆的产生该熔断现象的机理.     

Matter-wave interference in an axial triple-well optical dipole trap

This paper proposes a scheme of axial triple-well optical dipole trap by employing a simple optical system composed of a circular cosine grating and a lens. Three optical wells separated averagely by ～37 μm were created when illuminating by a YAG laser with power 1 mW. These wells with average trapping depth ～0.5 μK and volume ～74 μm³ are suitable to trap and manipulate an atomic Bose--Einstein condensation (BEC). Due to a controllable grating implemented by a spatial light modulator, an evolution between a triple-well trap and a single-well one is achievable by adjusting the height of potential barrier between adjacent wells. Based on this novel triple-well potentials, the loading and splitting of BEC, as well as the interference between three freely expanding BECs, are also numerically stimulated within the framework of mean-field treatment. By fitting three cosine functions with three Gaussian envelopes to interference fringe, the information of relative phases among three condensates is extracted.     

Improvement in the calculation of anti-Stokes energy transfer and experimental justification based on Er0.01YbxY1 - 0.01 - xVO4 crystal

The improvement on the calculation of anti-Stokes energy transfer rate is studied in the present work. The additional proportion coefficient between Stokes and anti-Stokes light intensities of quantum Raman scattering theory as compared with the classical Raman theory is introduced to successfully describe the anti-Stokes energy transfer. The theoretical formula for the improvement on the calculation of anti-Stokes energy transfer rate is derived for the first time in this study. The correctness of introducing coefficient exp{ΔE / kT} from well-known Raman scatter theory is demonstrated also. Moreover, the experimental lifetime measurement in Er_0.01Yb_xY_{1 - 0.01 - x}VO₄ crystal is performed to justify the validity of our important improvement in the original phonon-assisted energy transfer theory for the first time.     

Distributions and seasonal variations of dissolved carbohydrates in the Jiaozhou Bay,China

Surface seawater samples were collected in the Jiaozhou Bay, a typical semi-closed basin located at the western part of the Shandong Peninsula, China, during four cruises. Concentrations of monosaccharides (MCHO), polysaccharides (PCHO) and total dissolved carbohydrates (TCHO) were measured with the 2,4,6-tripyridyl-s-triazine spectroscopic method. Concentrations of TCHO varied from 10.8 to 276.1 μM C for all samples and the ratios of TCHO to dissolved organic carbon (DOC) ranged from 1.1 to 67.9% with an average of 10.1%. This result indicated that dissolved carbohydrates were an important constituent of DOC in the surface seawater of the Jiaozhou Bay. In all samples, the concentrations of MCHO ranged from 2.9 to 65.9 μM C, comprising 46.1 ± 16.6% of TCHO on average, while PCHO ranged from 0.3 to 210.2 μM C, comprising 53.9 ± 16.6% of TCHO on average. As a major part of dissolved carbohydrates, the concentrations of PCHO were higher than those of MCHO. MCHO and PCHO accumulated in January and July, with minimum average concentration in April. The seasonal variation in the ratios of TCHO to DOC was related to water temperature, with high values in January and low values in July and October. The concentrations of dissolved carbohydrates displayed a decreasing trend from the coastal to the central areas. Negative correlations between concentrations of TCHO and salinity in July suggested that riverine input around the Jiaozhou Bay had an important effect on the concentrations of dissolved carbohydrates in surface seawater. The pattern of distributions of MCHO and PCHO reported in this study added to the global picture of dissolved carbohydrates distribution.