Measuring tree stem diameters using intensity profiles from ground-based scanning lidar from a fixed viewpoint

This paper presents a method for using the intensity of returns from a scanning light detection and ranging (lidar) system from a single viewing point to identify the location and measure the diameter of tree stems within a forest. Such instruments are being used for rapid forest inventory and to provide consistent supporting information for airborne lidars. The intensity transect across a tree stem is found to be consistent with a simple model parameterised by the range and diameter of the trunk. The stem diameter is calculated by fitting the model to transect data. The angular span of the stem can also be estimated by using a simple threshold where intensity values are tested against the expected intensity for a stem of given diameter. This is useful when data are insufficient to fit the model or the stem is partially obscured. The process of identifying tree positions and trunk diameters is fully automated and is shown to be successful in identifying a high proportion of trees, including some that are partially obscured from view. The range and bearing to trees are in excellent agreement with field data. Trunk angular span and diameter estimations are well correlated with field measurements at the plot scale. The accuracy of diameter estimation is found to decrease with range from the scanning position and is also reduced for stems subtending small angles (less than twice the scanning resolution) to the instrument. A method for adjusting survey results to compensate for trees missed due to obscuration from the scanning point and the use of angle count methods is found to improve basal area estimates and achieve agreement within 4% of field measurements.     

The effects of frequency-dependent quasar variability on the celestial reference frame

We examine the relationship between source position stability and astrophysical properties of radio-loud quasars making up the International Celestial Reference Frame (ICRF2). Understanding this relationship is important for improving quasar selection and analysis strategies, and therefore reference frame stability. We construct flux density time series, known as light curves, for 95 of the most frequently observed ICRF2 quasars at both the 2.3 and 8.4 GHz geodetic very long baseline interferometry (VLBI) observing bands. Because the appearance of new quasar components corresponds to an increase in quasar flux density, these light curves alert us about potential changes in source structure before they appear in VLBI images. We test how source position stability depends on three astrophysical parameters: (1) flux density variability at X band; (2) time lag between flares in S and X bands; (3) spectral index root-mean-square (rms), defined as the variability in the ratio between S and X band flux densities. We find that the time lag between S and X band light curves provides a good indicator of position stability: sources with time lags $<$ 0.06 years are significantly more stable ( $>$ 20 % improvement in weighted rms) than sources with larger time lags. A similar improvement is obtained by observing sources with low $(<$ 0.12) spectral index variability. On the other hand, there is no strong dependence of source position stability on flux density variability in a single frequency band. These findings can be understood by interpreting the time lag between S and X band light curves as a measure of the size of the source structure. Monitoring of source flux density at multiple frequencies therefore appears to provide a useful probe of quasar structure on scales important to geodesy. The observed astrometric position of the brightest quasar component (the core) is known to depend on observing frequency. We show how multi-frequency flux density monitoring may allow the dependence on frequency of the relative core positions along the jet to be elucidated. Knowledge of the position–frequency relation has important implications for current and future geodetic VLBI programs, as well as the alignment between the radio and optical celestial reference frames.     

Paleoflood events recorded by speleothems in caves

Speleothems are usually composed of thin layers of calcite (or aragonite). However, cemented detrital materials interlayered between laminae of speleothemic carbonate have been also observed in many caves. Flowstones comprising discontinuous carbonate layers form due to flowing water films, while flood events introduce fluviokarstic sediments in caves that, on occasion, are recorded as clayey layers inside flowstones and stalagmites. This record provides a potential means of understanding the frequency of palaeofloods using cave records. In this work, we investigate the origin of this type of detrital deposit in El Soplao Cave (Northern Spain). The age of the lowest aragonite layer of a flowstone reveals that the earliest flood period occurred before 500 ka, though most of the flowstone formed between 422 +69/‐43 ka and 400 +66/‐42 ka. This suggests that the cave was periodically affected by palaeoflood events that introduced detrital sediments from the surface as a result of occasional extreme rainfall events, especially at around 400 ka. The mineralogical data enable an evolutionary model for this flowstone to be generated based on the alternation of flood events with laminar flows and carbonate layers precipitation that can be extrapolated to other caves in which detrital sediments inside speleothems have been found. Copyright © 2014 John Wiley & Sons, Ltd.     

Exploring the influence of biofilm on short‐term expansion and contraction of supratidal rock: an example from the Mediterranean

Previous geomorphological investigations using the traversing micro‐erosion meter (TMEM) have identified daily and hourly contractions and expansions of littoral rock on a range of lithologies. While organic influences on these patterns have been inferred, this has rarely been tested in a controlled way. Here, a TMEM was used to measure micro‐scale (<mm) topographic changes on supratidal limestone of the Massif des Calanques, southern France. Four TMEM monitoring sites (each 64 cm²) were set up in total, two in the Calanque de Morgiou and two in the Presqu'ile de Cassis. On both shores one TMEM bolt site was positioned on bare rock and the other on colonized rock. TMEM data were collected and the surface micro‐topography mapped for each site at two‐hourly intervals from early morning to late evening across one day in mid‐summer. Significant relative expansion and contraction was observed between measurement periods at all four sites, regardless of biofilm colonization (P < 0.001 in all instances), and sometimes between adjacent zones on the rock surface (at a scale of centimetres). Rock with and without biofilm behaved broadly similarly, but the magnitude of topographic change varied: average movement from one interval to the next was 0.03 mm on bare sites and 0.06 mm on biofilm‐colonized sites. As expected, patterns of surface change related largely to insolation, with greatest movement occurring in the morning and evening when thermal gradients were steepest. Interestingly, the presence of a biofilm intensified rock expansion, but delayed surface response to microclimatic variability. We largely attribute this effect to biofilm influences on surface albedo, and hypothesize that episodes of contraction and expansion are superimposed onto longer (annual to decadal) episodes of surface movement and downwearing. Short‐term TMEM studies therefore need to be coupled with longer‐term seasonal and annual measurements to improve understanding of rock surface dynamics. Copyright © 2014 John Wiley & Sons, Ltd.     

Hydraulic Conductivity from Nuclear Magnetic Resonance Logs in Sediments with Elevated Magnetic Susceptibilities

This study examined the application of slim-hole nuclear magnetic resonance (NMR) tools to estimate hydraulic conductivity (K_NMR) in an unconsolidated aquifer that contains a range of grain sizes (silt to gravel) and high and variable magnetic susceptibilities (MS) (10⁻⁴ to 10⁻² SI). A K calibration dataset was acquired at 1-m intervals in three fully screened wells, and compared to K_NMR estimates using the Schlumberger-Doll research (SDR) equation with published empirical constants developed from previous studies in unconsolidated sediments. While K_NMR using published constants was within an order of magnitude of K, the agreement, overprediction, or underprediction of K_NMR varied with the MS distribution in each well. An examination of the effects of MS on NMR data and site-specific empirical constants indicated that the exponent on T_2ML (n-value in the SDR equation, representing the diffusion regime) was found to have the greatest influence on K_NMR estimation accuracy, while NMR porosity did not improve the prediction of K. K_NMR was further improved by integrating an MS log into the NMR analyses. A first approach detrended T_2ML for the effects of MS prior to calculating K_NMR, and a second approach introduced an MS term into the SDR equation. Both were found to produce similar refinements of K_NMR in intervals of elevated MS. This study found that low frequency NMR logging with short echo times shows promise for sites with moderate to elevated MS levels, and recommends a workflow that examines parameter relationships and integrates MS logs into the estimation of K_NMR.     

PBDEs, methoxylated PBDEs and HBCDs in Japanese common squid (Todarodes pacificus) from Korean offshore waters

Little information is available on the levels of brominated compounds found in biota from the Korean Peninsula. In this study, Japanese common squids (Todarodes pacificus) were analyzed for 38 polybrominated diphenyl ethers, two methoxylated polybrominated diphenyl ethers and three stereoisomers of hexabromocyclododecane (α, β, and γ-HBCD) from the east and western coasts of the Korean Peninsula. Among 38 PBDEs, 10 PBDEs were detected and their total concentrations ranged from 21 to 292 ng/g lipid wt with a mean concentration of 108 ng/g lipid wt, while two MeO-BDEs and three isomers of HBCDs were detected in all samples. BDE47 showed the highest residual level, followed by BDE99, 154, 153, 28/33. Concentrations of PBDEs and MeO-BDEs were not significantly different between the both sides of the Korean Peninsula; however, HBCD concentrations were higher levels in the East/Japan Sea than the Yellow Sea, indicating that HBCD sources possibly exist in Japan.     

Polycyclic aromatic hydrocarbons in commercial fish and lobsters from the coastal waters of Madagascar following an oil spill in August 2009

Concentrations of polycyclic aromatic hydrocarbons were determined in species of commercial fish and lobsters following an oil-spill just off the protected Madagascan coastline. Samples were collected along the coastline within and outside the affected area. Summed PAH concentrations ranged from 1.9 μg kg⁻¹ to 63 μg kg⁻¹ wet weight, but with no higher molecular weight PAHs (>202 Da) being detected. All concentrations of benzo[a]pyrene, benz[a]anthracene and dibenz[a,h]anthracene were <0.1 μg kg⁻¹ wet weight, well within the EU and UK set limits for the protection of human health. Additionally, samples were calculated as the benzo[a]pyrene toxic equivalency quotient (TEQ) and found to be well below the level of concern in relation to health of human consumers. Evaluation of the biota PAH data indicated the origin of PAH was predominantly petrogenic with >80% arising from oil sources. Profile studies indicate a low-level multisource petrogenic contamination probably representing a pre-spill background for the area.     

Historical development of the saltmarsh at Wells,Maine

Comparisons of maps and aerial photographs dating from the late 1700s to the present document the recent development of an 8 km² saltmarsh that is situated behind a barrier spit in southern Maine. Tidal channels that were relatively narrow in 1794 became wider by 1872. The reduction of marsh bordering tidal channels is interpreted as evidence that marsh accretion could not keep pace with rising sea-level. This suggests that the rate of sea-level rise had increased, although a change in discharge or sediment load caused by extensive settlement and land clearance may also have been involved. Meander patterns of the tidal streams changed considerably throughout the time period covered by the maps, demonstrating that the streams of this marsh are more dynamic than some others that have been widely reported in the literature. These differences in stream dynamics are probably related to the differences in sedimentological structure of the marshes. Between 1872 and 1956 the barrier spit eroded on its inside (shoreward) edge, probably in response to the construction of riprapping and houses along the spit, and the subsequent reduction of overwash and aeolian transport of sediment. Modification of the tidal inlet and adjacent marsh during the 1960s, including jetty construction, dredging, and filling of portions of the marsh surface, affected the marsh only locally. One tidal stream has been migrating rapidly apparently in response to compaction of peat by dredge spoils and consequent local disruption of the marsh hydrology. Except for this migration, erosion of the marsh edge occurred immediately after the inlet modifications; planimetric changes in the marsh and its streams have been minor since then.