Properties of structure and function of cadmium-binding proteins/peptides from Euglena gracilis

Euglena gracilis makes two small Cd-binding proteins/peptides (Cd-BP I and Cd-BP II) in response to exposure to Cd²⁺. These proteins migrate slower than mammalian Cd-metallothionein (Cd-Mt) through Sephadex G-75, but like Cd-Mt also contain Zn and are separated into two species when chromatographed over a DEAE column. Both BPs are much less stable than Cd-Mt under acidic conditions. One source of this instability is that at least Cd-BP II contains acid-labile sulfide co-ordinated to the metals. It has been quantitated in Cd-BP II and shown to have a value of 1·25 ± 0·10 S²⁻/Cd. The reactivity of the Cd-binding sites in ligand substitution and thioldisulfide exchange reactions has been assessed. The reactions of Cd-BP I and II with pyridylazoresorcinol (PAR) were slow and displayed complex kinetic behavior. Similarly, both Cd-BPs react slowly and with complicated kinetics with 5,5′-dithiobis-(2-nitrobenzoate).     

The expression of CYP1A,vitellogenin and zona radiata proteins in Atlantic salmon (Salmo salar) after oral dosing with two commercial PBDE flame retardant mixtures: absence of short-term responses

The short-term effects of the commercial PBDE flame retardant mixtures Penta-BDE and cta-BDE on the expression of cytochrome P450 1A (CYP1A), vitellogenin (Vtg) and zona radiata proteins (Zrp) were investigated in juvenile salmon (Salmo salar). For this purpose, groups of fish were dosed twice (oral intake at days I and 4) with 10 and 50 mg/kg body weight of both commercial mixtures. The fishes were sacrificed at day 7 (n = 5 for each group) and 14 (n = 6 for each group), and blood, liver, fillet, and brain were collected. Blanks and positive controls were also part of the experiment. The expressions of Vtg, Zrp, and CYPIA were measured with several techniques (EROD, ELISA, Western, Northern and Slot Blot). The values in the groups of fish treated with Penta-BDE or Octa-BDE did not significantly differ from the reference group for any of the parameters tested. In contrast, the positive control groups treated with estradiol-17beta for Vtg and Zrp expression, and beta-naphthoflavone for CYP1A expression did show a significant response, indicating the potential sensitivity of the fishes for the parameters measured. Since the results of the chemical analyses showed concentrations of a number of PBDE congeners in liver, fillet, and brain that were about three orders of magnitude above those of fish from the North Sea, it is concluded that the short-term toxicity of both commercial PBDE mixtures for these endpoints was low.     

Evaluation of toxicity in tributaries of the Mersey estuary using the isopod Asellus aquaticus (L.)

Increasing numbers of industrial, agricultural and natural chemicals are present in sewage effluent and are known to elicit toxic effects in laboratory exposures, but little is known of their combined sub-lethal effect in the field. In this study, a combination of esterase activity and ventilation rate assays was performed to determine the neurological and physiological function of the freshwater crustacean Asellus aquaticus (L.) at sites above and below a sewage treatment works (STW). Cholinesterase and carboxylesterase activities were significantly inhibited (n=8, P<0.05) and ventilation rates increased (n=8, P=0.0001) in A. aquaticus at STW sites compared to those from reference sites, indicating a decrease in neurological and physiological function. The ecological relevance of these findings for the population dynamics of the organisms in the field is discussed.     

Burial and scour around short cylinder under progressive shoaling waves

The results of a laboratory experimental program aimed at better understanding the scour around and burial of heavy cylindrical objects under oscillating flow on a sandy bed are described. This study was motivated by its application to the dynamics of isolated cobbles/mines on a sandy floor under nonlinear progressive waves, such as that occur in shallow coastal waters beyond the wave-breaking region. In the experiments, nonlinear progressive waves were generated in a long wave tank of rectangular cross-section with a bottom slope. Model mines (short cylinders) were placed on the sandy bottom and the temporal evolution of the bed profile and the velocity field in the near field of the object were observed. Experiments were conducted at relatively high Reynolds numbers for a range of flow conditions, which can be characterized by the Keulegan–Carpenter number and Shields parameter. Depending on the values of these parameters, four different scour regimes around the cylinder including periodical burial of cylinder under migrating sand ripples were observed; they were classified as: (i) no scour/burial, (ii) initial scour, (iii) expanded scour, and (iv) periodic burial cases. A scour regime diagram was developed and the demarcation criteria between different regimes were deduced. Semi-empirical formulae that permit estimation of the scour depth with time, the equilibrium maximum scour depth and length, and conditions necessary for the burial of the cylinder as a function of main external parameters are also proposed.     

Upstream dams and downstream clams: growth rates of bivalve mollusks unveil impact of river management on estuarine ecosystems (Colorado River Delta, Mexico)

We studied how the extensive diversion of Colorado River water, induced by dams and agricultural activities of the last 70 years, affected the growth rates of two abundant bivalve mollusk species (Chione cortezi and Chione fluctifraga) in the northern Gulf of California. Shells alive on the delta today (‘Post-dam’ shells) grow 5.8–27.9% faster than shells alive prior to the construction of dams (‘Pre-dam’ shells). This increase in annual shell production is linked to the currently sharply reduced freshwater influx to the Colorado River estuary. Before the upstream river management, lower salinity retarded growth rates in these bivalves. Intra-annual growth rates were 50% lower during spring and early summer, when river flow was at its maximum. Growth rates in Chione today are largely controlled by temperature and nutrients; prior to the construction of dams and the diversion of the Colorado River flow, seasonal changes in salinity played an important role in regulating calcification rates.Our study employs sclerochronological (growth increment analysis) and geochemical techniques to assess the impact of reduced freshwater influx on bivalve growth rates in the Colorado River estuary. A combination of both techniques provides an excellent tool to evaluate the impact of river management in areas where no pre-impact studies were made.     

Bathymetry of the Tonga Trench and Forearc: a map series

Four new bathymetric maps of the Tonga Trench and forearc between 14 °S and 27 °S display the important morphologic and structural features of this dynamic convergent margin. The maps document a number of important geologic features of the margin. Major normal faults and fault lineaments on the Tonga platform can be traced along and across the upper trench slope. Numerous submarine canyons incised in the landward slope of the trench mark the pathways of sediment transport from the platform to mid- and lower-slope basins. Discontinuities in the trench axis and changes in the morphology of the landward slope can be clearly documented and may be associated with the passage and subduction of the Louisville Ridge and other structures on the subducting Pacific Plate. Changes in the morphology of the forearc as convergence changes from normal in the south to highly-oblique in the north are clearly documented. The bathymetric compilations, gridded at 500- and 200-m resolutions and extending along 500 km of the landward trench slope and axis, provide complete coverage of the outer forearc from the latitude of the Louisville Ridge-Tonga Trench collision to the northern terminus of the Tonga Ridge. These maps should serve as a valuable reference for other sea-going programs in the region, particularly the Ocean Drilling Program (ODP) and the National Science Foundation MARGINS initiative.     

Comparisons between the influences of habitat, body size and season on the dietary composition of the sparid Acanthopagrus latus in a large marine embayment

Seasonal samples from Shark Bay on the west coast of Australia were used to determine (1) the habitats occupied by the juveniles and adults of Acanthopagrus latus in this large subtropical marine embayment and (2) the extent to which the dietary composition of this sparid is influenced by habitat type, body length and season. Sampling was undertaken in two habitat types in which A. latus was known to be abundant, namely mangrove (Avicennia marina) creeks and nearby rocky areas, the latter comprising sandstone boulders and/or limestone reefs. The mean total length ±95% CLs of A. latus was far lower in mangrove creeks, 126 ± 6.1 mm, than in rocky areas, 313 ± 4.7 mm. As A. latus attains maturity at ca. 245 mm, the juveniles of this species typically occupy mangrove areas and then, with increasing body size, move to nearshore rocky areas, where they become adults. The species composition of the food ingested by juvenile A. latus in mangrove creeks differed markedly from that of large juveniles and adults in rocky areas. Based on analyses of data for both habitat types combined, this difference was far greater than that between size classes and season, which was negligible. There were indications, however, that, overall within each habitat, the dietary composition did change seasonally, although not with body size. Acanthopagrus latus fed predominantly on mangrove material, sesarmid crabs and small gastropods in mangrove habitats, and mainly on Brachidontes ustulatus in rocky areas, where this mytilid bivalve is very abundant. The mangrove material, which contributed nearly 40% of its overall dietary volume in mangrove creeks, consisted mainly of lateral root primordia. This apparently unique food source for a teleost is presumably ingested through subsurface nipping, which would be facilitated by the mouth and dentitional characteristics of sparids. The almost total lack of correspondence in the dietary compositions of fish in the length class that was well represented in both mangrove and rocky areas illustrates the extent to which this sparid is capable of opportunistic feeding behaviour.     

The morphodynamic modelling of tidal sand waves on the shoreface

An artificial sand wave on the Dutch shoreface of the North Sea has been studied in conditions with relatively strong tidal currents in the range of 0.5 to 1 m/s and sediments in the medium sand size range of 0.2 to 0.5 mm. The sand wave is perpendicular to the tidal current and has a maximum height and length of the order of 5 m and 1 km, respectively. The sand wave is dynamically active and shows migration rates of the order of a few metres per year. A numerical morphodynamic model (DELFT3D model) has been used to simulate the morphological behaviour of the sand wave in the North Sea. This model approach is based on the numerical solution of the three-dimensional shallow water equations in combination with a surface wave propagation model (wind waves) and the advection–diffusion equation for the sediment particles with online bed updating after each time step. The model results show that the sand wave grows in the case of dominant bed-load transport (weak tidal currents; relatively coarse sediment; small roughness height; low waves) and that the sand wave decays in the case of dominant suspended transport (strong currents, relatively fine sediment, large roughness height; storm waves).     

A linear Boltzmann equation to model wave scattering in the marginal ice zone

We present a linear Boltzmann equation to model wave scattering in the Marginal Ice Zone (the region of ocean which consists of broken ice floes). The equation is derived by two methods, the first based on Meylan et al. [Meylan, M.H., Squire, V.A., Fox, C., 1997. Towards realism in modeling ocean wave behavior in marginal ice zones. J. Geophys. Res. 102 (C10), 22981–22991] and second based on Masson and LeBlond [Masson, D., LeBlond, P., 1989. Spectral evolution of wind-generated surface gravity waves in a dispersed ice field. J. Fluid Mech. 202, 111–136]. This linear Boltzmann equation, we believe, is more suitable than the equation presented in Masson and LeBlond [Masson, D., LeBlond, P., 1989. Spectral evolution of wind-generated surface gravity waves in a dispersed ice field. J. Fluid Mech. 202, 111–136] because of its simpler form, because it is a differential rather than difference equation and because it does not depend on any assumptions about the ice floe geometry. However, the linear Boltzmann equation presented here is equivalent to the equation in Masson and LeBlond [Masson, D., LeBlond, P., 1989. Spectral evolution of wind-generated surface gravity waves in a dispersed ice field. J. Fluid Mech. 202, 111–136] since it is derived from their equation. Furthermore, the linear Boltzmann equation is also derived independently using the argument in Meylan et al. [Meylan, M.H., Squire, V.A., Fox, C., 1997. Towards realism in modeling ocean wave behavior in marginal ice zones. J. Geophys. Res. 102 (C10), 22981–22991]. We also present details of how the scattering kernel in the linear Boltzmann equation is found from the scattering by an individual ice floe and show how the linear Boltzmann equation can be solved straightforwardly in certain cases.