Regeneration of sand waves after dredging

Sand waves are large bed waves on the seabed, being a few metres high and lying hundreds of metres apart. In some cases, these sand waves occur in navigation channels. If these sand waves reduce the water depth to an unacceptable level and hinder navigation, they need to be dredged. It has been observed in the Bisanseto Channel in Japan that the sand waves tend to regain their shape after dredging. In this paper, we address modelling of this regeneration of sand waves, aiming to predict this process. For this purpose, we combine a very simple, yet effective, amplitude-evolution model based on the Landau equation, with measurements in the Bisanseto Channel. The model parameters are tuned to the measured data using a genetic algorithm, a stochastic optimization routine. The results are good. The tuned model accurately reproduces the measured growth of the sand waves. The differences between the measured weave heights and the model results are smaller than the measurement noise. Furthermore, the resulting parameters are surprisingly consistent, given the large variations in the sediment characteristics, the water depth and the flow field. This approach was tested on its predictive capacity using a synthetic test case. The model was tuned based on constructed predredging data and the amplitude evolution as measured for over 2 years. After tuning, the predictions were accurate for about 10 years. Thus, it is shown that the approach could be a useful tool in the optimization of dredging strategies in case of dredging of sand waves.     

Effect of free surface and strut on fins attached to a strut

An extensive experimental and computational investigation of the combined and separate effects of free surface and body on the lift characteristics of a pair of fins attached to a strut and fin alone is conducted. The results reveal that the free-surface effect becomes significant when the depth of submergence to chord ratio (H/c) is less than three. The effect of the strut is also realized for shallower depth of submergence of the fins through free-surface deformation leading to a significant change in the incidence angle of the flow to the fins. The numerical results based on the Higher Order Boundary Element Method with the linearized free-surface condition show good agreement with the experimental results for fin (foil) alone even at shallow submergence, but some discrepancies appear for the fin attached to the strut at higher speeds mostly due to the neglect of the nonlinear free-surface effect.     

The influence of salinity on the solubility of Zn and Cd sulphides in the Scheldt estuary

In the estuary of the river Scheldt, where an oxygen gradient exists in addition to the salinity gradient, redox processes will be of major importance for trace metal mobilisation. In this study, the influence of salinity and pH on the redox processes of dissolved Zn and Cd sulphides is investigated together with the effects on the ratio of the dissolved Zn and Cd concentrations. The speciation of these metals is calculated with the chemical equilibrium programme +. Zn sulphides are oxidised at lower oxygen concentrations than Cd sulphides, due to lower stability constants, causing a sudden increase or peak in the dissolved Zn/Cd ratio. The formation of dissolved Cd chloride complexes when oxidation occurs at high salinities (S=15) increases the mobility of Cd, causing a decrease in the Zn/Cd peak of the total dissolved concentrations. The peak is three to four times smaller at S=15 than when oxidation occurs at S=2. The simple model calculations compare very well with field data. The Scheldt estuary is suitable to illustrate these calculations. In the 1970s, the anoxic part of the estuary reached S=15–20, but since the early 1980s it has dropped to S=2–10. Historic data on metals in the estuary from 1978, 1987 and the 1990s were used to compare with the equilibrium calculations. The increase of the dissolved Zn/Cd peak at low salinity as a consequence, of the decreasing anoxic region is confirmed well by the data. The good agreement between model calculations and field data is a proof of the extreme importance of redox processes for the solubility of Zn and Cd sulphides in the estuary.     

A singular evolutive extended Kalman filter to assimilate ocean color data in a coupled physical–biochemical model of the North Atlantic ocean

Within the European DIADEM project, a data assimilation system for coupled ocean circulation and marine ecosystem models has been implemented for the North Atlantic and the Nordic Seas. One objective of this project is to demonstrate the relevance of sophisticated methods to assimilate satellite data such as altimetry, surface temperature and ocean color, into realistic ocean models. In this paper, the singular evolutive extended Kalman (SEEK) filter, which is an advanced assimilation scheme where three-dimensional, multivariate error statistics are taken into account, is used to assimilate ocean color data into the biological component of the coupled system. The marine ecosystem model, derived from the FDM model [J. Mar. Res. 48 (1990) 591], includes 11 nitrogen and carbon compartments and describes the synthesis of organic matter in the euphotic zone, its consumption by animals of upper trophic levels, and the recycling of detritic material in the deep ocean. The circulation model coupled to the ecosystem is the Miami isopycnic coordinate ocean model (MICOM), which covers the Atlantic and the Arctic Oceans with an enhanced resolution in the North Atlantic basin. The model is forced with realistic ECMWF ocean/atmosphere fluxes, which permits to resolve the seasonal variability of the circulation and mixed layer properties. In the twin assimimation experiments reported here, the predictions of the coupled model are corrected every 10 days using pseudo-measurements of surface phytoplankton as a substitute to chlorophyll concentrations measured from space. The diagnostics of these experiments indicate that the assimilation is feasible with a reduced-order Kalman filter of small rank (of order 10) as long as a sufficiently good identification of the error structure is available. In addition, the control of non-observed quantities such as zooplankton and nitrate concentrations is made possible, owing to the multivariate nature of the analysis scheme. However, a too severe truncation of the error sub-space downgrades the propagation of surface information below the mixed layer. The reduction of the actual state vector to the surface layers is therefore investigated to improve the estimation process in the perspective of sea-viewing wide field-of-view sensor (SeaWiFS) data assimilation experiments.     

Expression of P-glycoprotein in southeastern oysters, Crassostrea virginica

These studies provide important fundamental information regarding the expression of P-glycoprotein (p-gp) in southeastern oysters (Crassostrea virginica). Using rhodamine transport studies, p-gp activity was detected in newly fertilized embryos. A monoclonal antibody (C219) was used to evaluate p-gp expression in oyster tissues. On the basis of laboratory studies, p-gp expression tended to be higher in gill tissues than mantle tissues, and was generally not related to salinity differences. Seasonal studies were conducted with oysters collected monthly for 1 year from Lighthouse Creek, an unpolluted site. There was a general pattern of higher p-gp expression in the warmer months and lower expression in the colder months. In contrast, total gill protein concentrations decreased during the warmer months and increased during the colder months. These studies indicate that there are seasonal patterns in p-gp expression which may represent an adaptive response to natural stressors associated with summer conditions.     

Wave forces on, and water-surface fluctuations around a vertical cylinder encircled by a perforated square caisson

The wave forces and moments on and the water surface fluctuations around a vertical circular cylinder encircled by a perforated square caisson were experimentally investigated. The porosity of the outer square caisson was varied from 4.24 to 14.58%. The in-line wave forces on the inner vertical cylinder are influenced by changing the porosity of the outer caisson, whereas the variations in the water surface fluctuations are less influenced in this porosity range. The in-line moment on the vertical cylinder is relatively less sensitive when the porosity is increased from 4.24 to 8.75%, but varies substantially when it is increased from 8.75 to 14.58%. The force and moment ratio (i.e. the ratio of the force or moment on the vertical cylinder, when it is encircled by the perforated caisson to the force or moment on the cylinder without any protection around it) reduces with increased wave height, H, and wave length, L, whereas the wave height ratio (ratio of the wave height at a point in the vicinity of the structure to the incident wave height) is less sensitive for the varying H and L. A new non-dimensional parameter, p^1.5 (D/L)/(H/d), is introduced to predict the in-line force and moment on the inner vertical cylinder, where d is local water depth, D is the diameter of the inner cylinder and p is the porosity of the outer caisson in percentage. Simple predictive equations for forces, moments and water surface fluctuations are provided.     

Convergence,divergence and vertical velocity at a tidal front in Hiuchi-Nada,Japan

The detailed flow structure around a tical front in Hiuchi-Nada, Japan was observed with the use of ADCP (Acoustic Doppler Current Profiler). The surface convergence region is observed at the transition zone between vertically well mixed area and the stratified area. The surface divergence regions exist next to the surface convergence region. The strong downward current is estimated in the middle layer just below the surface convergence region. The maximum surface convergence and the maximum downward velocity in the middle layer are 1.0×10^–4 s^–1 and 0.12 cm s^–1, respectively.     

Risk of dike failure due to flow slides

Flow slides may affect the stability of dikes. A flow slide is an instability of a submerged slope caused by liquefaction of loose, (medium) fine sand. Whether a flow slide will occur depends on the properties of the sand, which are a function of its density, and the geometry of the slope, as determined by wave and current induced scour and sedimentation. The influence of sand properties and the geometry parameters on the risk of flow slides are discussed. The application of a flow slide prediction method to an example and a risk analysis is briefly discussed.     

Bathymetry of the Tonga Trench and Forearc: a map series

Four new bathymetric maps of the Tonga Trench and forearc between 14 °S and 27 °S display the important morphologic and structural features of this dynamic convergent margin. The maps document a number of important geologic features of the margin. Major normal faults and fault lineaments on the Tonga platform can be traced along and across the upper trench slope. Numerous submarine canyons incised in the landward slope of the trench mark the pathways of sediment transport from the platform to mid- and lower-slope basins. Discontinuities in the trench axis and changes in the morphology of the landward slope can be clearly documented and may be associated with the passage and subduction of the Louisville Ridge and other structures on the subducting Pacific Plate. Changes in the morphology of the forearc as convergence changes from normal in the south to highly-oblique in the north are clearly documented. The bathymetric compilations, gridded at 500- and 200-m resolutions and extending along 500 km of the landward trench slope and axis, provide complete coverage of the outer forearc from the latitude of the Louisville Ridge-Tonga Trench collision to the northern terminus of the Tonga Ridge. These maps should serve as a valuable reference for other sea-going programs in the region, particularly the Ocean Drilling Program (ODP) and the National Science Foundation MARGINS initiative.     

Etiologies, observations and reporting of estuarine finfish lesions.

Lesions in estuarine finfish are associated with a variety of organisms including parasites and bacterial, viral, and fungal infectious agents. In addition, trauma, suboptimal water quality, and other abiotic stress factors may result in the loss of homeostasis. We have observed solitary ulcerative lesions on menhaden sampled from the Chesapeake Bay, Maryland, the Pimlico River, North Carolina, and the St. Johns River, Florida. Histologically, the lesions demonstrated a marked chronic inflammatory infiltrate and granulomas in response to fungal hyphae throughout large areas of exposed necrotic muscle. Gram-negative rod-shaped bacteria were also observed in the lesions, a common finding in ulcers of aquatic organisms. Similar observations in menhaden and other species have been described previously in the literature as ulcerative mycosis, mycotic granulomatosis, red spot disease, and epizootic ulcerative syndrome. Despite the many different known causes of fish lesions, the popular press and the scientific literature have recently emphasized Pfiesteria piscicida and other Pfiesteria-like dinoflagellates (and their bioactive compounds) as the primary causative agent for finfish lesions, particularly mycotic granulomatous ulcers in Atlantic menhaden. While some laboratory data suggest that Pfiesteria may play a role in field-observed lesions, much more cause-and-effect evidence is needed to determine the importance of other risk factors, both alone or and in combination with Pfiesteria. In order to better understand the etiology of lesion initiation and progression in estuarine finfish, accurate assessments of environmental conditions collected on appropriate temporal and spatial scales, and fish morphological indicators consistent with gross and histological pathologic terminology, should be used for reporting fish lesion observations and kills. Further, this outlook will help to avoid bias and may foster a broader perspective for examining the health of estuarine systems in general.