The significance of transparent exopolymeric particles in the vertical distribution of bacteria and heterotrophic nanoflagellates in Lake Pavin

The abundance, size distribution, and bacterial colonization of Transparent Exopolymeric Particles (TEP) were examined in two consecutive years during the spring diatom development throughout the water column of the deep meromictic Lake Pavin, France. TEP concentrations ranged from 1.9 to 13.4 × 10⁵ particles l⁻¹ and their distribution and size spectra indicated that these particles are the main factor in governing the transport of diatoms to the deep hypolimnion of the lake. The majority of TEP was colonized by bacteria that constituted 0.4–8.9% of total DAPI-stained bacteria. The intensity of bacterial colonization was strongly related to temperature and decreased with particle size. A more important colonization of small particles in the hypolimnion during thermal stratification suggested that bacterial colonisation also increased with the age of the particle. The abundance of heterotrophic nanoflagellates (HNF) was more significantly related to the density of particles than to the density of total bacteria and the intensity of bacterial colonization of TEP. Our results therefore suggest that TEP are a more important factor for HNF development than attached and free bacteria. We conclude that TEP are involved not only in sedimentation processes but also in the dynamics of bacteria and protozoa in freshwater pelagic environments.     

A discontinuous finite element baroclinic marine model on unstructured prismatic meshes

We describe the time discretization of a three-dimensional baroclinic finite element model for the hydrostatic Boussinesq equations based upon a discontinuous Galerkin finite element method. On one hand, the time marching algorithm is based on an efficient mode splitting. To ensure compatibility between the barotropic and baroclinic modes in the splitting algorithm, we introduce Lagrange multipliers in the discrete formulation. On the other hand, the use of implicit–explicit Runge–Kutta methods enables us to treat stiff linear operators implicitly, while the rest of the nonlinear dynamics is treated explicitly. By way of illustration, the time evolution of the flow over a tall isolated seamount on the sphere is simulated. The seamount height is 90% of the mean sea depth. Vortex shedding and Taylor caps are observed. The simulation compares well with results published by other authors.     

Evaluation of site conditions for the Ankara Basin of Turkey based on seismic site characterization of near-surface geologic materials

Regional site conditions relevant for seismic hazard studies can be derived from various geologic, seismologic, and geotechnical sources. In this study, site conditions are derived for the Ankara Basin in Turkey by merging in-situ seismic measurements of dynamic properties, geologic information, and some geotechnical boring information. Field seismic refraction surveys were performed at 259 sites in the project area to classify and characterize Plio–Pleistocene fluvial deposits and Quaternary alluvial and terrace deposits. The shear-wave velocity profiles of the near-surface geologic units are used to characterize site classes according to the International Building Code [International Code Council, ICC. International Building Code. Structural and fire- and life-safety provisions (seismic, wind, accessibility, egress, occupancy and roof codes), 2006. Whittier, CA.] and the Turkish Seismic Code [Ministry of Public Works and Settlement, 1998. Turkish Seismic Code, Specification for Structures to be Built in Disaster Areas, Ankara, Turkey], and to develop a regional model for the average shear-wave velocity in the top 30 m. The resulting maps of site class indicate that the classification system for the Turkish Seismic Code results in a significant portion of the Ankara Basin being classified as Z4, the softest site class. The International Building Code site classification system results in most of the Ankara Basin being classified as D, stiff soil. These differences are caused by the Turkish Seismic Code incorporating information from only the surface layer, while the International Building Code incorporates information from the top 30 m.     

Parametric analysis of liquid storage tanks base isolated by curved surface sliding bearings

Curved surface sliding bearings, which are usually called as friction pendulum system (FPS) are commonly used for base isolation of liquid storage tanks since the period of the isolation system is independent of the storage level. However the restoring force and the damping at the isolation system are functions of axial load which changes during an earthquake excitation. This change might be in appreciable amounts especially for the tanks with high aspect ratios. The present paper focuses on earthquake performances of both broad and slender tanks base isolated by FPS bearings. The effects of overturning moment and vertical acceleration on axial load variation at the bearings are considered. The efficiency of the isolation system is investigated by analyzing the effects of various parameters such as; (i) isolation period, (ii) tank aspect ratio and (iii) coefficient of friction. The Haroun and Housner's three-degrees-of-freedom lumped mass model was used to solve the governing equations of motion in which convective, impulsive and rigid masses were included. A number of selected ground motions were considered and the results were compared to those of non-isolated cases.As a result, base isolation was found to be effective in reducing the base shear values for both broad and slender tanks without significantly affecting the sloshing displacements of the broad ones. The efficiency was even more pronounced for slender tanks subjected to near fault ground motions for isolation periods above 3 s. This specific value of isolation period also eliminated possible design problems arising from under-estimation of base shear values (up to 40%) due to ignoring the effects of axial load variation in lower isolation periods. Overturning effects should not be ignored especially for tanks with high aspect ratios (S) and being subjected to near fault ground motion.     

Sedimentary archives of the French Atlantic coast (inner Bay of Vilaine,south Brittany): Depositional history and late Holocene climatic and environmental signals

The late Holocene is of particular interest to our understanding of the evolution of coastal sedimentary systems because this period encompasses warmer and cooler periods, and rising sea level in northern Europe. Based on an approach combining AMS ¹⁴C, sedimentological and rock magnetic analyses on sediment cores complemented with seismic data collected in the macrotidal Bay of Vilaine (south Brittany), we document the depositional history of the inner bay coeval to the mid- to late-Holocene transgression in south Brittany. Correlation between sedimentary archives revealed the main sedimentary infilling phases during the last 6000 years. Four units (U1–U4) are recognized in the coastal sediment wedge of the system, corresponding to the stepwise marine invasion of the bay. We show that (1) marine inundation, due to the steep morphology of the bedrock, is diachronous between distal and proximal records. A time lag of ～1000 years is inferred over a distance of less than 5 km; (2) in the outer areas, the sedimentation has been condensed since 3000 years; (3) proximal estuarine archives offer the best record of sedimentary processes covering the last 2000 years, including the Medieval Warm Period (MWP).Correlations in proximal records in the Bay of Vilaine assess the connection between coastal sedimentary dynamics, climatic conditions and anthropogenic activities during the MWP. We match the preservation of clay deposits to increased river-borne suspended matter transported to the estuary probably as a result of accelerated land-use development (higher soil erosion) in the catchment area between ca. 880 and 1050 AD. Because the preservation of estuarine sedimentary successions is favoured when coastal wave sediment reworking is minimal, it is proposed that the prevailing climatic regime in south Brittany during the MWP likely resembled to that of the preferred negative phase of the North Atlantic Oscillation (NAO). Our data are fairly consistent with other late Holocene records from northern Europe including the Atlantic seaboard. However, they outline the difficulty in interpreting climatic and anthropogenic signatures in coastal sedimentary records where high-resolution chronologies required to unravel their respective influences are still missing.     

Magnetostratigraphic correlation of the Oxfordian–Kimmeridgian boundary

A magnetic polarity pattern for Boreal and Sub-Boreal ammonite zones of the Upper Oxfordian to Lower Kimmeridgian was established and confirmed in four British sections, including the proposed Global Boundary Stratotype Section and Point (GSSP) on the Isle of Skye (Scotland) to define the base of the international Kimmeridgian Stage. A coeval pattern for Sub-Mediterranean ammonite zones was compiled from seven sections in Poland, one German section and multi-section composites from France and Spain. The mean paleopole for the European Craton (excluding Spain) at the Oxfordian–Kimmeridgian boundary is 74.2°N, 181.3°E (Α₉₅ = 3.8°). The common magnetic polarity scale enables inter-correlation of ammonite subzones among these three faunal provinces and to the marine magnetic-anomaly M-Sequence. The proposed GSSP at the base of the Pictonia baylei Zone is near the base of an extended interval dominated by reversed polarity, which is interpreted to be Chron M26r. This GSSP level projects to the lower to middle part of the Epipeltoceras bimammatum Subzone, which is the middle subzone of this E. bimammatum Zone in the Sub-Mediterranean standard zonation. In contrast, the traditional placement of the Oxfordian–Kimmeridgian boundary in that Sub-Mediterranean standard zonation (base of Sutneria platynota Zone) is at the base of Chron M25r, or nearly 1 million years younger.     

Molecular evidence for life in the 3.5 billion year old Warrawoona chert

The biological origin of organic matter in the oldest siliceous sediments (cherts) is still debated. To address this issue, the insoluble organic matter (kerogen) was isolated from a chert of the Warrawoona group. The chemical structure of the kerogen was investigated through a combination of analytical techniques including solid-state ¹³C nuclear magnetic resonance and pyrolysis. Although dominated by aromatic hydrocarbons, the pyrolysate comprises a homologous series of long chain aliphatic hydrocarbons characterized by odd-over-even carbon number predominance. This distribution is only consistent with a biological origin. As kerogen must be contemporaneous of the solidification of the chert, this observation should be regarded as an evidence for the presence of life on Earth, 3.5 By ago.     

Assessment of the influence of horizontal diaphragms on the seismic performance of vernacular buildings

The awareness and preservation of the vernacular heritage and traditional construction techniques and materials is crucial as a key element of cultural identity. However, vernacular architecture located in earthquake prone areas can show a particularly poor seismic performance because of inadequate construction practices resulting from economic restraints and lack of resources. The horizontal diaphragms are one of the key aspects influencing the seismic behavior of buildings because of their major role transmitting the seismic actions to the vertical resisting elements of the structure. This paper presents a numerical parametric study adopted to understand the seismic behavior and resisting mechanisms of vernacular buildings according to the type of horizontal diaphragm considered. Detailed finite element modeling and nonlinear static (pushover) analyses were used to perform the thorough parametric study aimed at the evaluation and quantification of the influence of the type of diaphragm in the seismic behavior of vernacular buildings. The reference models used for this study simulate representative rammed earth and stone masonry vernacular buildings commonly found in the South of Portugal. Therefore, this paper also contributes for a better insight of the structural behavior of vernacular earthen and stone masonry typologies under seismic loading.     

Macrobenthic community for assessment of estuarine health in tropical areas (Northeast, Brazil): Review of macrofauna classification in ecological groups and application of AZTI Marine Biotic Index

The aim of the present study was to investigate the ecological quality of tropical estuaries on the northeastern coast of Brazil using the AMBI. Macrofauna classification based on ecological groups was reviewed using the Indicator Value (IndVal) coefficient. The results indicate that the ecosystems exhibit some level of disturbance. Most sites are situated between slightly-moderately disturbed boundaries due to the higher proportion of Nematoda (assigned here as Ecological Group I) and of Oligochaeta and Tubificidae (both classified as Ecological Group V). The AMBI proved efficient in evaluating environmental status, although the applicability of this index requires adjustments regarding some species in ecological groups. The present study also highlights the merits of the IndVal method for examining the assignments of species/taxa to an ecological group and demonstrates the validity of this coefficient is an assessment tool. Moreover, the complementary use of different methods is recommended for the assessment of ecosystem quality.