Circulation and dispersion in a cancellate coast: The rivers,bays and estuaries of central Maine

The glacially carved central coast of Maine is incised by river systems with interconnecting channels, offshore-trending submarine ridges, and narrow passages between nearshore islands and headlands. The tidal range exceeds 3 m, leading to complex and vigorous circulation patterns with strong flows in narrow channels, near river mouths, and between islands. The spongiform coastal morphology allows enhanced exchange between offshore waters, estuaries and internecine bays, resulting in rapid dispersal of nutrients, larvae and contaminants throughout the region. A fine-grid numerical circulation model has been used to examine the influences of the tides, river flows and winds on the dispersion of lobster larvae and pollutants in the nearshore and riverine environment. This paper describes the model application, presents a few salient features of the circulation patterns, and examines some implications for the coastal environment. For example, under realistic tides and variable southwest summer winds, about 80% of neutral near-surface particles introduced near the offshore islands (a proxy for stage IV lobster larvae from offshore sources) remain within a few km of the islands over a two-week period. On the other hand, a persistent, periodic sea breeze can remove more than two-thirds of the particles from the domain over the same period. Tidal mixing disperses pollutants entering the upper Kennebec River to the offshore and through internecine passages in about one week.     

Velocity potential formulations of highly accurate Boussinesq-type models

The highly accurate Boussinesq-type equations of Madsen et al. (Madsen, P.A., Bingham, H.B., Schäffer, H.A., 2003. Boussinesq-type formulations for fully nonlinear and extremely dispersive water waves: Derivation and analysis. Proc. R. Soc. Lond. A 459, 1075–1104; Madsen, P.A., Fuhrman, D.R., Wang, B., 2006. A Boussinesq-type method for fully nonlinear waves interacting with a rapidly varying bathymetry. Coast. Eng. 53, 487–504); Jamois et al. (Jamois, E., Fuhrman, D.R., Bingham, H.B., Molin, B., 2006. Wave-structure interactions and nonlinear wave processes on the weather side of reflective structures. Coast. Eng. 53, 929–945) are re-derived in a more general framework which establishes the correct relationship between the model in a velocity formulation and a velocity potential formulation. Although most work with this model has used the velocity formulation, the potential formulation is of interest because it reduces the computational effort by approximately a factor of two and facilitates a coupling to other potential flow solvers. A new shoaling enhancement operator is introduced to derive new models (in both formulations) with a velocity profile which is always consistent with the kinematic bottom boundary condition. The true behaviour of the velocity potential formulation with respect to linear shoaling is given for the first time, correcting errors made by Jamois et al. (Jamois, E., Fuhrman, D.R., Bingham, H.B., Molin, B., 2006. Wave-structure interactions and nonlinear wave processes on the weather side of reflective structures. Coast. Eng. 53, 929–945). An exact infinite series solution for the potential is obtained via a Taylor expansion about an arbitrary vertical position z = zˆ. For practical implementation however, the solution is expanded based on a slow variation of zˆ and terms are retained to first-order. With shoaling enhancement, the new models obtain a comparable accuracy in linear shoaling to the original velocity formulation. General consistency relations are also derived which are convenient for verifying that the differential operators satisfy a potential flow and/or conserve mass up to the order of truncation of the model. The performance of the new formulation is validated using computations of linear and nonlinear shoaling problems. The behaviour on a rapidly varying bathymetry is also checked using linear wave reflection from a shelf and Bragg scattering from an undulating bottom. Although the new models perform equally well for Bragg scattering they fail earlier than the existing model for reflection/transmission problems in very deep water.     

Tsunami generation,propagation, and run-up with a high-order Boussinesq model

In this work we extend a high-order Boussinesq-type (finite difference) model, capable of simulating waves out to wavenumber times depth kh < 25, to include a moving sea-bed, for the simulation of earthquake- and landslide-induced tsunamis. The extension is straight forward, requiring only an additional term within the kinematic bottom condition. As first test cases we simulate linear and nonlinear surface waves generated from both positive and negative impulsive bottom movements. The computed results compare well against earlier theoretical, numerical, and experimental values. Additionally, we show that the long-time (fully nonlinear) evolution of waves resulting from an upthrusted bottom can eventually result in true solitary waves, consistent with theoretical predictions. It is stressed, however, that the nonlinearity used far exceeds that typical of geophysical tsunamis in the open ocean. The Boussinesq-type model is then used to simulate numerous tsunami-type events generated from submerged landslides, in both one and two horizontal dimensions. The results again compare well against previous experiments and/or numerical simulations. The new extension compliments recently developed run-up capabilities within this approach, and as demonstrated, the model can therefore treat tsunami events from their initial generation, through their later propagation, and final run-up phases. The developed model is shown to maintain reasonable computational efficiency, and is therefore attractive for the simulation of such events, especially in cases where dispersion is important.     

Vertical habitat partitioning by large calanoid copepods in the oceanic subarctic Pacific during Spring

The copepods Neocalanus plumchrus, N. flemingeri, N. cristatus, and Eucalanus bungii dominate the net zooplankton throughout the subarctic Pacific Ocean. All four species have an extensive seasonal ontogenetic vertical migration, completing most or all of their feeding and somatic growth in spring and early summer. We used stratified tows with MOCNESS and BIONESS instrumented net systems to resolve their upper ocean vertical distributions in May and June of 1984, 1987 and 1988. In each year the feeding copepodite stages of all four species were concentrated above the permanent halocline (roughly from 0 to 150m). However, the four species showed strong vertical species zonation and segregation within this layer. We consistently found a near-surface pair (N. plumchrus and N. flemingeri) and a subsurface pair (N. cristatus and E. bungii). The boundary between these groups shifts vertically, but was sharply defined and was very often coincident with a weak and transient thermocline marking the base of the layer actively mixed by surface wind and wave energy. Diel vertical migration was very limited during our sampling periods.The data suggest that the vertical distribution patterns of the copepods could be set by responses to the local intensity of turbulent mixing in the watercolumn. N. plumchrus and N. flemingeri occupied a stratum characterized by strong turbulence. N. cristatus and E. bungii occupied a stratum that was a local minimum in turbulence profiles. The depth of the boundary between the species pairs was deeper when winds and surface energy inputs were strong. The vertical partition pattern may also be determined by a difference in feeding strategy between the species pairs. N. plumchrus and N. flemingeri may feed on the enhanced protozoan population of the mixed layer, while N. cristatus and E. bungii feed on particle aggregates settling from above.     

Stress-induced apoptosis in sea urchin embryogenesis

We find that early sea urchin embryos have the capability to induce programmed cell death, or apoptosis, in response to chemical and physical stress. Strongylocentrotus purpuratus embryos (fertilized, 4 cell, 16 cell, 64 cell, and early blastula) were exposed to known cytotoxins, in order to determine when apoptosis occurs naturally and in response to stress. Using cell permeability as an indicator of early stage apoptosis, caspase activation as a mid-stage indicator, and DNA fragmentation as a late stage indicator, we find that during the cleavage stage of embryogenesis apoptosis is almost completely absent. However, a statistically significant (p<0.001) rise in apoptosis in stressed embryos is evident around 24 h after fertilization, during the early blastula stage and shortly after hatching. Before this stage, exposed embryos show no statistically significant increases in apoptosis in comparison to the controls. This pattern of apoptosis in development is similar to that seen in lower vertebrate models in which stress-induced apoptosis occurs only around the mid-blastula transition. We conclude that apoptosis may be used to rid embryos of aberrant or damaged cells in early development, but this response is stage-dependant. Repair, rather than apoptosis, may be utilized during earlier stages, or alternatively, embryos exposed to such stressors may continue development with damaged cells and perhaps damaged DNA. Our continued studies will focus on these alternative hypotheses.     

Late Quaternary history of contourite drifts and variations in Labrador Current flow,Flemish Pass,offshore eastern Canada

Contourite drifts of alternating sand and mud, shaped by the Labrador Current, formed during the late Quaternary in Flemish Pass seaward of the Grand Banks of Newfoundland, Canada. The drifts preserve a record of Labrador Current flow variations through the last glacial maximum. A high-resolution seismic profile and a transect of four cores were collected across Beothuk drift on the southeast side of Flemish Pass. Downcore and lateral trends in grain size and sedimentation rate provide evidence that, between 16 and 13 ka, sediment was partitioned across Beothuk drift and the adjacent Flemish Pass floor by a strong current flow but, from 29 to 16 ka, sedimentation was more of a blanketing style, represented by draped reflections interpreted as being due to a weaker current. The data poorly resolve the low sedimentation rates since 13 ka, but the modern Labrador Current in Flemish Pass is the strongest it has been in at least the past 29 ka. Pre-29 ka current flow is interpreted based on reflection architecture in seismic profiles. A prominent drift on the southwestern side of Flemish Pass formed above a mid-Miocene erosion surface, but was buried by a mass-transport deposit after the penultimate glacial maximum and after drift deposition switched to eastern Flemish Pass. These findings illustrate the temporal complexity of drift sedimentation and provide the first detailed proxy for Labrador Current flow since the last glacial maximum.     

Observed storminess patterns and trends in the circum-Arctic coastal regime

Storm event statistics for the open-water season (June–October) were extracted from the terrestrial-based observational record throughout the circumpolar coastal regime over the period 1950–2000. The Barents/Norwegian and Kara regions exhibited an active spring/quiet summer signature typical of the mid-latitudes. The Kara and Laptev Sea regions had a strong June peak possibly associated with early sea ice breakup. The Chukchi sector exhibited large storm power values (defined as speed²*duration). Storm counts declined from 1950 to 1970, shifted rapidly from 1970 to 1974 to a level of greater mean activity and greater inter-annual variability, and declined after 1988.     

Bioenhancement of cadmium transfer along a multi-level food chain

Previous studies have shown that metal partitioned to a subcellular compartment containing trophically available metal (TAM) is readily available to predators and may be enhanced by increased binding of metal to heat-stable proteins (HSP - e.g., metallothioneins). The aim of the current investigation was to determine the influence of TAM on the trophic transfer of Cd along an experimental, three-level food chain: Artemia franciscana (brine shrimp)-->Palaemonetes pugio (grass shrimp)-->Fundulus heteroclitus (mummichog). P. pugio were fed for 7 days on A. franciscana exposed to Cd in solution (including (109)Cd as radiotracer) and subjected to subcellular fractionation or fed to F. heteroclitus. An HSP-driven increase in the percentage of Cd associated with TAM (TAM-Cd%) in A. franciscana exposed to 1 muM Cd resulted in a bioenhancement (i.e., a greater than linear increase with respect to A. franciscana exposure) of Cd trophic transfer to P. pugio. Increased dietary Cd exposure did not affect TAM-Cd% in P. pugio nor trophic transfer to F. heteroclitus.     

Annual Cycle of Zooplankton Biomass, Abundance and Species Composition in the Neritic Area of the Balearic Sea, Western Mediterranean

Abstract. Seasonal changes in zooplankton biomass, abundance and species composition were studied at a neritic station in the Balearic Sea between April 1993 and May 1994. Sampling was carried out every 10 days in a zone influenced by the main current circulating through the Mallorca channel. Three main peaks of zooplankton biomass and abundance were observed: (1) at the beginning of summer when the thermocline developed, (2) in autumn when the thermocline broke down, and (3) in early spring. The smaller zooplankton fraction (100–250 μm) comprised on average 32 % of the total biomass and 73 % of total abundance. Copepods were the predominant group (64 % of the total abundance) with Clausocalanus, Oithona and Paracalanus being the most abundant genera. Paracalanus parvus, Clausocalanus furcatus, Acartia clausi, Oithona plumifera, Temora stylifera, Centropages typicus and Oncaea mediterranea were found to be the most important species in the area. Other abundant groups were cladocerans (15 %) and meroplankton larvae (12 %), both of which were particularly numerous during the stratified period. The copepod community was characterized by the above‐cited perennial species, which were abundant during the cycle studied. However, the influence of the hydrological conditions of the Balearic Sea, such as the Atlantic water influx and the physical structure of the water column (stratification and mixing), promoted the observed variability in zooplankton as well as the appearance of characteristic species during the annual cycle.