Genetic structure of the tall sea pen Funiculina quadrangularis in NW Scottish sea lochs

The tall sea pen Funiculina quadrangularis has a patchy distribution around the UK, being found in sheltered waters below 20 m depth on the northwest coast of Scotland and Ireland. The limited distribution and sensitivity to bottom fishing activities make F. quadrangularis vulnerable to reduction in population numbers that may lead to genetic isolation and reduced diversity. Because of this vulnerability and low resilience to physical disturbance, the tall sea pen is recognised as a Species of Principle Importance under the Natural Environment and Rural Communities Act, 2006, UK. ( http://www.legislation.gov.uk/ukpga/2006/16/contents ) and is also on the Biodiversity Action Plan list of Priority Species for the UK. In the Mediterranean it is recognised as a sensitive and essential fish habitat because it forms habitat for several commercially important crustaceans. The aim of this study was to understand the current state of the genetic structure and gene flow of F. quadrangularis in areas of NW Scotland. We developed 10 microsatellite markers and used them to genotype 176 samples from four populations. Overall, our results suggest that there is high genetic diversity and high gene flow between colonies of F. quadrangularis in and among locations in Loch Linnhe and Loch Duich. As a result of the high rates of gene flow, genetic differentiation between sites was low. This may provide resilience to human impacts if distant populations have a high connectivity. However, care must be taken, as small but significant isolation by distance was found between the most geographically distant sites and only a small part of the species range was examined in this study. The genetic tools developed here will provide a foundation for wider studies of this vulnerable species.     

Sea-level, sediment supply and coastal changes: Examples from the coast of Ireland

Sediment supply and pre-existing shoreline morphology are crucial factors in controlling coastal changes due to sea-level rise. Using examples from both southeast and northeast Ireland, it can be shown that sea-level change may trigger a sequence of events which leads to both static and dynamic shoreline equilibrium. Cliff erosion and longshore sediment movement in east Co. Wexford has led to injection of sediment onto the shelf, and the growth, under both wave and tide regimes, of linear offshore shoals. These shoals now control the pattern of shoreline erosion and provide a template for possible stepwise evolution of the coast under any future sea-level rise. In contrast, the nearby coast of south Co. Wexford comprises a series of coarse clastic barriers moving monotonously onshore, via overwash processes. Here the behavior of the barrier is conditioned by the antecedent morphology of both the beach face and stream outlet bedforms. Finally, the rock platform coast of Co. Antrim presents a far more resistant shoreline to incident marine processes, yet even here there is strong evidence of present process control over so-called ‘raised’ platforms and embayments. It is concluded that coastal sediment supply and dynamics, together with coastal morphology and its interaction with waves, present a far more complex variety of sea-level indicators than is normally acknowledged.     

Differential model of the hydrophysical fields' vertical structure in a stratified tidal flow over a shelf

This paper studies the influence of shelf tidal flows on the structure of surface and near-bottom turbulent boundary layers.Translated by Vladimir A. Puchkin.     

Preferential concentration of marine particles in isotropic turbulence

The effect of small-scale turbulence on marine and aquatic particle transport has traditionally been to act as a means for creating homogeneous distributions. However, previous numerical simulations of heavy particle transport in turbulent flows have shown that particles are preferentially concentrated by turbulence and that effects of preferential concentration are most pronounced for particle parameters comparable to the Kolmogorov scales. Therefore, the focus of the present work is examination of the preferential concentration of marine particles. Application of Kolmogorov scaling indicates that effects of preferential concentration may be important for marine particles with diameters of order 1 mm in the upper mixed layer. Numerical simulations of unstratified isotropic turbulence are then used to support the notion that preferential concentration of particles possessing material characteristics representative of those encountered in marine environments can occur. In the simulations, particles of order 1 mm diameter are idealized as rigid spheres with a density ratio of 1.005. Simulation results demonstrate preferential concentration with peak particle number densities ranging from 10 to 60 times the global mean value. Implications of preferential concentration are also discussed, together with the limitations of the approach employed in the present study.     

Images of the seabed in the Faroe-Shetland Channel from commercial 3D seismic data

A large number of 3D deep seismic surveys in the Faroe-Shetland Channel gives continuous coverage over most of the region. These surveys were designed primarily to image depths in excess of 4 km, use low frequency sources and are recorded at low temporal sample rates. However, commercial 3D data can generate highly detailed images of the seabed due to the high spatial sample rate, typically 12.5 m. This is particularly true in waters below 200 m. Despite geophysical artefacts, the images reveal that there are a number of sedimentary processes at work adjacent to and within this channel. On the West Shetland Shelf, iceberg scouring and moraines reflect the impact of glaciation. On the West Shetland slope there is clear evidence for down-slope processes, such as debris flows, linear erosion channels, basal fans and (one case) slope failure. Along-slope processes are also active as indicated by the presence of sediment waves and contourite mounds. On the floor of the basin, polygonal cracking can be observed. The most spectacular feature appears to be the Judd Deeps, a system of cliffs approximately 200 m high and 40 km across. Traditionally, seabed investigation has been performed using high-resolution surveys. This study shows that deep exploration data can also provide useful images of the seafloor.     

Species, tissue and gender-related organochlorine bioaccumulation in white-sided dolphins, pilot whales and their common prey in the northwest Atlantic

Organochlorine concentrations were measured in white-sided dolphins, pilot whales, and their prey from the Gulf of Maine and used to identify species, tissue, and gender differences, and trophic transfer trends, in bioaccumulation. Polychlorinated biphenyl concentrations ([PCB]) in dolphin blubber (13 +/- 7.1 micrograms/g fresh wt.) were twice those in pilot whales, but pesticide concentrations (20 +/- 13 micrograms/g fresh) were similar between species. 4,4'-DDE, trans-non-achlor, Cl6(153) and Cl6(138) concentrations were highest. Skin tissues had more recalcitrant organochlorines than the internal organs. Male dolphins bioaccumulated higher concentrations of nonmetabolizable PCBs and hexachlorocyclohexane (HCH) isomers, whereas pilot whales had no gender-related differences in bioaccumulation. Pilot whales, mackerel, and herring had proportionately higher concentrations of DDTs, whereas [PCB] were higher in dolphins and squid. Although these odontocetes feed at the same trophic level and store a similar suite of contaminants, dolphins bioaccumulated higher and potentially hazardous 4,4'-DDE and PCB concentrations from food in their more geographically restricted range.     

Sediment movement under unidirectional flows: an assessment of empirical threshold curves

A selection of threshold data sets from previous investigations is used to re-examine, selectively, some of the empirical curves that are most commonly used for the prediction of sediment threshold. Simple analytical formulae are derived describing single line curves for mean threshold values and envelopes for the initial movement of discrete particles and the commencement of mass sediment transport phases of the critical condition.The complexity of factors governing the prevailing conditions at threshold, together with the randomness of events, limits deterministic solutions; however, the curves provide an approach that can be used readily in practical applications. In contrast, the envelope presentation is more of a stochastic approach to the definition of threshold. It recognises that there is no definitive threshold condition under which a particular particle size can be displaced, but rather that a range of threshold values exist.The empirical threshold relationships were derived on the basis of a relatively large amount of data. However, the sources utilised have interpreted the ‘critical condition’ in various ways, implying that the formulae must be treated with caution in applications.     

Numerical modeling of quasi-two-dimensional vortices in the atmosphere over the Black Sea

We consider quasi-two-dimensional rapidly dissipating mesoscale atmospheric vortices generated over the Black Sea near the Crimean and Caucasian coasts. Based on the results of numerical modeling for a characteristic example of the Crimean eddy, we determine its structure and parameters and estimate the rate of decay of kinetic energy and enstrophy. In addition to the large-scale secondary circulation in the vortex, we also consider a small-scale secondary circulation induced by Raleigh-Bénard convection.