An East-West Comparison of the Transition Zone Coastal Pelagic Nekton of the North Pacific Ocean

During the 1980s and 1990s, scientific research cruises were conducted in both the eastern and western boundary regions of the North Pacific Ocean. The main purpose of these cruises was to examine the abundance and distribution patterns of juvenile salmon in coastal waters. These studies created one of the most extensive databases ever collected on the species composition of coastal Transition Zone epipelagic nekton in the North Pacific Ocean. Catch data from two purse seine and two surface trawl surveys (one each from off northern Japan and eastern Russia and off the West Coast of the U.S.) were examined using multivariate techniques to analyze the community structure of nektonic cephalopods, elasmobranchs, and teleosts in the coastal zone during the summer and autumn months. Juvenile salmonids are generally among the most common species caught, but in terms of overall abundance, other potential competitors with juvenile salmon, such as small squids and clupeoid fishes predominated the catches. Species diversity and dominance varied among areas and gear types. Distinct assemblages were found in each area, but the two regions had closely related species occupying similar ecological positions in each habitat. This revised version was published online in August 2006 with corrections to the Cover Date.     

The Co-occurrence of Methanotrophic and Chemoautotrophic Sulfur-Oxidizing Bacterial Symbionts in a Deep-sea Mussel

Abstract. In April 1990 a new species of mytilid containing bacterial endosymbionts was discovered at a deep-water seep site within Alaminos Canyon in the Gulf of Mexico. Activities of ribulose bisphosphate carboxylase/oxygenase and ATP sulfurylase, as well as the presence of substantial levels of elemental sulfur in the gill tissues indicate the presence of chemoautotrophic sulfur-oxidizing symbionts in the gills. Methanol dehydrogenase activity and the tissue stable carbon isotope ratios indicate the presence of methanotrophic bacteria in the gills of the same animals. Two distinct size classes and morphological types of gram negative bacteria are visible in transmission electron micrographs of the gill tissue, one of which contains the complex internal membranes typical of methanotrophs. Both general types of symbionts have been demonstrated singly in related species of deep-sea mytilids. In this species, however, both types are found in single individuals, often within the same cell vacuole.     

Revisiting the orogenic energy balance in the western Taiwan orogen with weak faults

Orogens at convergent margins must meet the energetic requirements necessary to lift rocks against gravity, allow for frictional sliding along basal detachments and accommodate internal deformation processes. The combination of critical taper and kinematic wedge theories predicts the partitioning between these energy sinks as a function of both fault and crustal strengths. Integrating contemporary estimates of both crustal pore fluid pressures and the coefficient of friction on major faults, we find that work associated with internal deformation processes is the dominant energy sink in the western Taiwan orogenic wedge. These processes consume 54% of the total work budget, while the dissipation rates associated with frictional sliding on the basal detachment and lifting rocks against gravity are lower, requiring only 11% and 35% respectively. These results suggest a mechanical dichotomy in orogenic wedges where the faulting dominates the kinematic deformation budget, but internal distributed deformation processes dominate the energy budget.     

CostMAP: an open-source software package for developing cost surfaces using a multi-scale search kernel

ABSTRACT

Cost surfaces are a crucial aspect of route optimization and least cost path (LCP) calculations and are used in awide range of disciplines including computer science, landscape ecology, and energy-infrastructure modeling. Linear features present akey weakness to traditional routing calculations along cost surfaces because they cannot identify whether moving from acell to its adjacent neighbors constitutes crossing alinear barrier (increased cost) or following acorridor (reduced cost). Following and avoiding linear features can drastically change predicted routes. We introduce an approach to address this adjacency issue using asearch kernel that identifies these critical barriers and corridors. We have built this approach into anew Java-based open-source software package– CostMAP (cost surface multi-layer aggregation program)– which calculates cost surfaces and cost networks using the search kernel. CostMAP allows users to input multiple GIS data layers and to set weights and rules for developing aweighted-cost network. We compare CostMAP performance with traditional cost surface approaches and show significant performance gains– both following corridors and avoiding barriers– by modeling the movement of alarge terrestrial animal– the Baird’s Tapir (Tapirus bairdii)– in amovement ecology framework and by modeling pipeline routing for carbon capture and storage (CCS).     

Survey evaluations to assess marine bioinvasions

Countries need to know what species are present within their waters to effectively manage the issue of non-indigenous marine species. Five survey methods are currently employed to detect introduced marine species: the Hewitt and Martin protocols (66% of effort; 73 ports, 12 countries); Rapid Assessment Surveys (7% of effort; 8 regions, 4 countries); the Bishop Museum protocols (7% of effort; 8 ports, 3 countries); the Chilean aquaculture surveys (1% of effort; numerous regions; 1 country); and Passive Sampling protocols (18% of effort; 20 ports, 2 countries). These methods use either quantitative, qualitative, or a mixture of the two sampling techniques and tend to target locations that are potential inoculation sites (i.e., such as ports, marinas and aquaculture facilities). To date, introduced marine species surveys have been implemented in 19 countries and have detected more than 1185 non-indigenous, 735 cryptogenic and 15,315 native species.     

Bioaccumulation and enantiomeric profiling of organochlorine pesticides and persistent organic pollutants in the killer whale (Orcinus orca) from British and Irish waters

Concentrations and enantiomeric profiles for a range of organochlorine compounds are reported in blubber samples from a number of individual killer whales (Orcinus orca) from British and Irish waters. Elevated contaminant levels and enriched isotopic ratios were determined in one individual whale sampled in the Scottish Western Isles compared to the others suggesting marine mammal based dietary influences. The potential application of isotopic ratios to model contaminant uptake, enantioselective enrichment and accumulation is demonstrated. Data are presented which provide information on enantioselective enrichment factors (EFs) for o,p'-DDT, alpha-HCH and toxaphene congeners CHB26 and CHB 50. This dataset further improves the current database on reported levels of a number of contaminants and provides additional background information on potential metabolic processes in killer whales from British and Irish waters.     

Tree-ring based hydroclimate reconstruction over northern Vietnam from Fokienia hodginsii: eighteenth century mega-drought and tropical Pacific influence

We present here the first statistically calibrated and verified tree-ring reconstruction of climate from continental Southeast Asia. The reconstructed variable is March–May (MAM) Palmer Drought Severity Index (PDSI) based on ring widths from 22 trees (42 radial cores) of rare and long-lived conifer, Fokienia hodginsii (Po Mu as locally called) from northern Vietnam. This is the first published tree ring chronology from Vietnam as well as the first for this species. Spanning 535 years, this is the longest cross-dated tree-ring series yet produced from continental Southeast Asia. Response analysis revealed that the annual growth of Fokienia at this site was mostly governed by soil moisture in the pre-monsoon season. The reconstruction passed the calibration-verification tests commonly used in dendroclimatology, and revealed two prominent periods of drought in the mid-eighteenth and late-nineteenth centuries. The former lasted nearly 30 years and was concurrent with a similar drought over northwestern Thailand inferred from teak rings, suggesting a “mega-drought” extending across Indochina in the eighteenth century. Both of our reconstructed droughts are consistent with the periods of warm sea surface temperature (SST) anomalies in the tropical Pacific. Spatial correlation analyses with global SST indicated that ENSO-like anomalies might play a role in modulating droughts over the region, with El Niño (warm) phases resulting in reduced rainfall. However, significant correlation was also seen with SST over the Indian Ocean and the north Pacific, suggesting that ENSO is not the only factor affecting the climate of the area. Spectral analyses revealed significant peaks in the range of 53.9–78.8 years as well as in the ENSO-variability range of 2.0 to 3.2 years.     

Adenine oxidation by pyrite-generated hydroxyl radicals

Cellular exposure to particulate matter with concomitant formation of reactive oxygen species (ROS) and oxidization of biomolecules may lead to negative health outcomes. Evaluating the particle-induced formation of ROS and the oxidation products from reaction of ROS with biomolecules is useful for gaining a mechanistic understanding of particle-induced oxidative stress. Aqueous suspensions of pyrite particles have been shown to form hydroxyl radicals and degrade nucleic acids. Reactions between pyrite-induced hydroxyl radicals and nucleic acid bases, however, remain to be determined. Here, we compared the oxidation of adenine by Fenton-generated (i.e., ferrous iron and hydrogen peroxide) hydroxyl radicals to adenine oxidation by hydroxyl radicals generated in pyrite aqueous suspensions. Results show that adenine oxidizes in the presence of pyrite (without the addition of hydrogen peroxide) and that the rate of oxidation is dependent on the pyrite loading. Adenine oxidation was prevented by addition of either catalase or ethanol to the pyrite/adenine suspensions, which implies that hydrogen peroxide and hydroxyl radicals are causing the adenine oxidation. The adenine oxidation products, 8-oxoadenine and 2-hydroxyadenine, were the same whether hydroxyl radicals were generated by Fenton or pyrite-initiated reactions. Although nucleic acid bases are unlikely to be directly exposed to pyrite particles, the formation of ROS in the vicinity of cells may lead to oxidative stress.     

Radiocarbon deglaciation chronology of the Thunder Bay,Ontario area and implications for ice sheet retreat patterns

The sensitivity of ice sheets to climate change influences the return of meltwater to the oceans. Here we track the Laurentide Ice Sheet along a ～400 km long transect spanning about 6000 yr of retreat during the major climate oscillations of the lateglacial. Thunder Bay, Ontario is near a major topographic drainage divide, thus terrestrial ablation processes are the primary forcers of ice margin recession in the study area. During deglaciation three major moraine sets were produced, and have been assigned minimum ages of 13.9 ± 0.2, 12.3 ± 0.2–12.1 ± 0.1, and 11.2 ± 0.2 cal ka BP from south to north. These define a slow retreat (～10–50 m/a) prior to major climate oscillations which was then followed by a factor of ～2 increase during the Bölling–Alleröd, and an additional increase during the early Holocene. When compared to retreat rates in other terrestrial settings of the ice sheet, nearly identical patterns emerge. However this becomes problematic because a key control on retreat rates is the surface slope of the ice sheet and this should vary considerably over areas of so-called hard and soft beds. Further these ice margin reconstructions would not allow meltwater sourced in the Hudson Basin to drain into the Atlantic basin until after Younger Dryas time.