Tree-mycorrhiza symbiosis accelerate mineral weathering: Evidences from nanometer-scale elemental fluxes at the hypha-mineral interface

In soils, mycorrhiza (microscopic fungal hypha) living in symbiosis with plant roots are the biological interface by which plants obtain, from rocks and organic matter, the nutrients necessary for their growth and maintenance. Despite their central role in soils, the mechanism and kinetics of mineral alteration by mycorrhiza are poorly constrained quantitatively. Here, we report in situ quantification of weathering rates from a mineral substrate, (0 0 1) basal plane of biotite, by a surface-bound hypha of Paxillus involutus, grown in association with the root system of a Scots pine, Pinus sylvestris. Four thin-sections were extracted by focused ion beam (FIB) milling along a single hypha grown over the biotite surface. Depth-profile of Si, O, K, Mg, Fe and Al concentrations were performed at the hypha-biotite interface by scanning transmission electron microscopy-energy dispersive X-ray spectroscopy (STEM-EDX). Large removals of K (50-65%), Mg (55-75%), Fe (80-85%) and Al (75-85%) were observed in the topmost 40 nm of biotite underneath the hypha while Si and O are preserved throughout the depth-profile. A quantitative model of alteration at the hypha-scale was developed based on solid-state diffusion fluxes of elements into the hypha and the break-down/mineralogical re-arrangement of biotite. A strong acidification was also observed with hypha bound to the biotite surface reaching pH < 4.6. When consistently compared with the abiotic biotite dissolution, we conclude that the surface-bound mycorrhiza accelerate the biotite alteration kinetics between pH 3.5 and 5.8 to ∼0.04 μmol biotite m⁻² h⁻¹. Our current work reaffirms that fungal mineral alteration is a process that combines our previously documented bio-mechanical forcing with the μm-scale acidification mediated by surface-bound hypha and a subsequent chemical element removal due to the fungal action. As such, our study presents a first kinetic framework for mycorrhizal alteration at the hypha-scale under close-to-natural experimental conditions.     

A physiographic approach to land use planning

Physiography has been studied in the United States for more than 75 years, but only recently has it been applied to land use planning. Advantages of a physiographic approach are that it 1) focuses on the problems at the proper scale and conserves energy, effort, and time by selecting the critical parameters, 2) stresses geologic structure and process as factors which should control land use, and 3) presents data in a form which the non-geologically trained planner can easily understand. In 1928 Fenneman delineated and described the provinces and sections of the United States. This paper proposes a classification of smaller physiographic units and presents two examples of how they can be used for planning purposes. Below the section, the units used in this paper are the subsection, the land type, and the topographic element. Subsections delineate areas of distinct geologic structure or process whereas land types delineate ranges in the intensity of those processes. Topographic elements delineate units with distinct ranges of slopes or shapes of slopes, such as concave or convex.     

Sedimentology of early Pliocene sandstones in the south-western Taiwan foreland: Implications for basin physiography in the early stages of collision

This work presents sedimentological observations and interpretations on three detailed sections of the Pliocene Yutengping/Ailiaochiao formations, deposited in the early stages of collision in Taiwan. Seven facies associations record paleoenvironments of deposition ranging from nearshore to lower offshore with a strong influence of tidal reworking, even in shelfal sub-tidal environments, and a pro-delta setting characterized by mass-flows. The association of shallow facies of the upper offshore to lower shoreface with pro-delta turbidite facies sourced in the orogen to the east suggests a peculiar setting in which turbidite deposition occurred below wave base but on the shelf, in water depths of probably less than 100 m. This adds to the examples of “shallow turbidites” increasingly commonly found in foreland basins and challenges the classical view of a “deep” early underfilled foreland basin. Time series analysis on tidal rhythmites allow us to identify a yearly signal in the form of periodic changes of sand-supply, energy and bioturbation that suggests a marked seasonality possibly affecting precipitation and sediment delivery as well as temperature. The Taiwan foreland basin may also present a potentially high-resolution record in shallow sediments of the early installation of monsoonal circulation patterns in east Asia. We confirm partly the paleogeography during the early stages of collision in Taiwan: the Chinese margin displayed a pronounced non-cylindrical geometry with a large basement promontory to the west in place of the modern Taiwan mountain range. Collision in Taiwan may have happened at once along the whole length of the modern mountain range, instead of progressively from north to south as classically considered.     

Control‐volume mixed finite element methods

A key ingredient in simulation of flow in porous media is accurate determination of the velocities that drive the flow. Large‐scale irregularities of the geology (faults, fractures, and layers) suggest the use of irregular grids in simulation. This paper presents a control‐volume mixed finite element method that provides a simple, systematic, easily implemented procedure for obtaining accurate velocity approximations on irregular (i.e., distorted logically rectangular) block‐centered quadrilateral grids. The control‐volume formulation of Darcy’s law can be viewed as a discretization into element‐sized “tanks” with imposed pressures at the ends, giving a local discrete Darcy law analogous to the block‐by‐block conservation in the usual mixed discretization of the mass‐conservation equation. Numerical results in two dimensions show second‐order convergence in the velocity, even with discontinuous anisotropic permeability on an irregular grid. The method extends readily to three dimensions.     

The dissolution of synthetic Na-boltwoodite in sodium carbonate solutions

Uranyl silicates such as uranophane and Na-boltwoodite appear to control the solubility of uranium in certain contaminated sediments at the US Department of Energy Hanford site [Liu, C., Zachara, J.M., Qafoku, O., McKinley, J.P., Heald, S.M., Wang, Z. 2004. Dissolution of uranyl microprecipitates in subsurface sediments at Hanford Site, USA. Geochim. Cosmochim. Acta68, 4519-4537.]. Consequently, the solubility of synthetic Na-boltwoodite, Na(UO₂)(SiO₃OH) · 1.5H₂O, was determined over a wide range of bicarbonate concentrations, from circumneutral to alkaline pH, that are representative of porewater and groundwater compositions at the Hanford site and calcareous environments generally. Experiments were open to air. Results show that Na-boltwoodite dissolution was nearly congruent and its solubility and dissolution kinetics increased with increasing bicarbonate concentration and pH. A consistent set of solubility constants were determined from circumneutral pH (0 added bicarbonate) to alkaline pH (50 mM added bicarbonate). Average or 5.85 ± 0.0.26; using the Pitzer ion-interaction model or Davies equation, respectively. These values are close to the one determined by [Nguyen, S.N., Silva, R.J., Weed, H.C., Andrews, Jr., J.E., 1992. Standard Gibbs free energies of formation at the temperature 303.15 K of four uranyl silicates: soddyite, uranophane, sodium boltwoodite, and sodium weeksite. J. Chem. Thermodynamics24, 359-376.] under very different conditions (pH 4.5, Ar atmosphere).     

Monte Carlo simulation of mixing in Ca3Fe2Ge3O12–Ca4Ge4O12 garnets and implications for the thermodynamic stability of pyrope–majorite solid solution

Static lattice energy calculations, based on empirical pair potentials, were performed for a large set of structures differing in the arrangement of octahedral cations within the garnet 2 × 2 × 2 supercell. The compositions of these structures varied between Ca₃Fe₂Ge₃O₁₂ and Ca₄Ge₄O₁₂. The energies were cluster expanded using pair and quaternary terms. The derived ordering constants were used to constrain Monte Carlo simulations of temperature-dependent mixing properties in the ranges of 1,073–3,673 K and 0–10 GPa. The free energies of mixing were calculated using the method of thermodynamic integration. The calculations predict a wide miscibility gap between Fe-rich (cubic) and Fe-pure (tetragonal) garnets consistent with recent experimental observations of Iezzi et al. (Phys Chem Miner 32:197–207, 2005). It is shown that the miscibility gap arises due to a very strong cation ordering at the Fe-pure composition, driven by the charge difference between Ca²⁺ and Ge⁴⁺ cations. The structural and thermodynamic analogies between Ca–Ge and Mg–Si systems suggest that a similar miscibility gap should exist between pyrope and Mg–Si-majorite.     

Physical,chemical, and biological conditions associated with the early stages of the Lake Michigan vernal thermal front

An investigation of the thermal front in southeastern Lake Michigan during April 1988 revealed a dynamic physical, chemical, and biological environment. The front was observed approximately 4 km from the coast as a distinct gradient separating cold open-lake waters from warmer nearshore waters. Surface isotherms near the front were generally parallel to one another but skewed with respect to shore. Comparison between April 22 and 29 showed that the surface isothern pattern was modulated by wind stress. The pattern from April 29 showed signs of flow instabilities with horizontal scales of 1 km to 5 km. Surface drifter trajectories provided estimates of horizontal convergence at the fron which varied from 7×10^?6 s^?1 to 20×10^?6 s^?1. Inferred rates of downwelling, which ranged from 9.5 m d^?1 to 20.7 m d^?1, were sufficient to move a water parcel from the surface to the bottom in 2 to 6 d at the front. Convergent circulation was observed on both sampling dates despite contrasts in wind stress. Concentrations of chloride, soluble silica, and chlorophyll, which were always higher inshore, were 5% to 82% larger than offshore mean values. The aquatic environment just inshore of the thermal front was characterized by chlorphyll concentrations which exceeded 5.0 μg 1^?1 while concentrations offshore were between 1.0 μg 1^?1 and 2.0 μg 1^?1. A relatively uniform vertical structure in chlorophyll concentrations in the frontal zone was consistent with the observed convergence and inferred downwelling near the front.