Estuarine modification of nutrient and sediment exports to the Great Barrier Reef Marine Park from the Daintree and Annan River catchments

Nutrient and suspended sediment concentrations were measured in the dry season and during the rising and falling stages of flood events in the Annan and Daintree rivers to estimate catchment exports. These flood events were also sampled along the salinity gradient in the estuary and nearshore shelf to quantify the modification of terrestrial sediment and nutrient loads as they pass through estuaries into the Great Barrier Reef lagoon. In the Daintree River TSS concentrations were found to increase between the catchment and the estuary plume. The source of TSS may have been scour of the estuarine channel or from land use in the catchment of the lower estuary. In the dry season nitrogen enters the Annan and Daintree estuaries predominantly in the form of PON and DON in roughly equal proportions. Nitrogen exports to the GBR are mostly in the form of DON. In the wet season the majority of nitrogen enters the estuaries as DON and leaves as PON. Nitrogen removal in the estuaries and plumes appears to be biologically mediated once suspended sediment concentrations decrease to a point where phytoplankton growth is not light limited. In the dry season phosphorus enters and leaves the estuaries primarily in organic form. PIP is the dominant form of phosphorus in river water, but leaves the estuary more evenly distributed between all forms. These estuarine processes result in less nitrogen and phosphorus being delivered to the GBR lagoon than is exported from the catchment. The differences between these estuaries highlights the need for further work to explore modifications in estuaries that drain into the Great Barrier Reef lagoon.     

Water quality in the Great Barrier Reef region: responses of mangrove, seagrass and macroalgal communities

Marine plants colonise several interconnected ecosystems in the Great Barrier Reef region including tidal wetlands, seagrass meadows and coral reefs. Water quality in some coastal areas is declining from human activities. Losses of mangrove and other tidal wetland communities are mostly the result of reclamation for coastal development of estuaries, e.g. for residential use, port infrastructure or marina development, and result in river bank destabilisation, deterioration of water clarity and loss of key coastal marine habitat. Coastal seagrass meadows are characterized by small ephemeral species. They are disturbed by increased turbidity after extreme flood events, but generally recover. There is no evidence of an overall seagrass decline or expansion. High nutrient and substrate availability and low grazing pressure on nearshore reefs have lead to changed benthic communities with high macroalgal abundance. Conservation and management of GBR macrophytes and their ecosystems is hampered by scarce ecological knowledge across macrophyte community types.     

Variation in biogeochemical parameters across intertidal seagrass meadows in the central Great Barrier Reef region

This survey provides baseline information on sediment characteristics, porewater, adsorbed and plant tissue nutrients from intertidal coastal seagrass meadows in the central region of the Great Barrier Reef World Heritage Area. Data collected from 11 locations, representative of intertidal coastal seagrass beds across the region, indicated that the chemical environment was typical of other tropical intertidal areas. Results using two different extraction methods highlight the need for caution when choosing an adsorbed phosphate extraction technique, as sediment type affects the analytical outcome. Comparison with published values indicates that the range of nutrient parameters measured is equivalent to those measured across tropical systems globally. However, the nutrient values in seagrass leaves and their molar ratios for Halophila ovalis and Halodule uninervis were much higher than the values from the literature from this and other regions, obtained using the same techniques, suggesting that these species act as nutrient sponges, in contrast with Zostera capricorni. The limited historical data from this region suggest that the nitrogen and phosphorus content of seagrass leaves has increased since the 1970s concomitant with changing land use practice.     

The effects of two benthic chamber stirring systems on the diffusive boundary layer,oxygen flux,and passive flow through model macrofauna burrows

Diffusive boundary layers (DBL), sediment oxygen flux, and natural passive flow through model macrofauna burrows were compared in two benthic chambers: one with a conventional rotational stirrer and the other with a two-dimensional flow diffuser system. Oxygen microprobe profiles showed that at similar velocities the mean diffusive boundary layer (DBL) thickness induced by a conventional rotor stirrer (453±118 μm) was not significantly different to that produced by the diffuser system (403±53 μm). The rotor produced twice as much DBL spatial variability (coefficient of variation 27%) as the diffuser (CV 11%). Variability between the rotor system’s DBL transect replicates was also two times greater (average CV of 22%) compared to the diffuser (CV 14%). At equivalent stirring speeds over experimental sediments, mean O₂ consumption rates were also not significantly different between the two systems. The diffuser induced consistently greater (16–37%) passive Bernoullian flow through model macrofauna borrows irrespective of the position of inhalant-exhalent openings. The rotor stimulated anomalous burrow flow regimes over a greater area of the chamber floor (36%) compared to the diffuser (23%). Depending on vent orientation the rotor was shown to reverse (exhalent to inhalant) burrow flow regimes in the central 9% of the chamber floor. This artifact of radial pressure and velocity differentials may have severe implications for tube dwelling infauna that rely on unidirectional flow. The diffuser system more closely mimicked natural two-dimensional water flow over the sediment surface and structures therein and is likely to give more representative results when measuring benthic processes within incubation devices.     

Multi-indicator conductivity transfer functions for Quaternary palaeoclimate reconstruction

Diatoms (Bacillariophyceae; single-celled algae) and ostracods (Ostracoda; shelled microcrustacea) are known for their sensitivity to salinity. In palaeolimnology, the potential has yet to be tested for quantifying past salinity, lake level, and by inference, climate change, by application of multiple-indicator transfer functions. We used weighted averaging techniques to derive diatom (n = 91; r ²  = 0.92) and ostracod (n = 53; r ²  = 0.83) conductivity transfer functions from modern diatom, ostracod and water chemistry data collected in lakes of central, western and northern Turkey. Diatoms were better represented across the full gradient than ostracods, at intermediate levels of conductivity in particular, but both transfer functions were statistically robust. Because transfer functions are not infallible, we further tested the strength and simplicity of salinity response and the potential for identifying characteristic associations of diatom and ostracod taxa in different parts of the salinity gradient, to improve palaeoclimate reconstruction. We identified a subset of 51 samples that contained both diatoms and ostracods, collected at the same time from the same habitat. We used Two-Way Indicator Species Analysis of a combined diatom-ostracod data set, transformed to achieve numerical equivalence, to explore distributions in more detail. A clear ecological threshold was apparent at ~3 g l⁻¹ salinity, rather than at 5 g l⁻¹, the boundary used by some workers, equating to the oligosaline-mesosaline boundary. Other salinity boundaries were poorly defined, indicating lack of a simple, well-defined salinity response. We did, however, define characteristic associations of taxa, to facilitate the distinction to be drawn between a hydrologically open, fresh lake and an oligosaline lake, in palaeoenvironmental reconstruction. Over the rest of the salinity gradient, we highlighted the potential for the multi-proxy approach to strengthen ostracod-based reconstruction in particular, to overcome the problem of broad apparent tolerance ranges in common halophilic taxa such as Limnocythere inopinata, which often dominate in low-diversity fossil assemblages. The combination of multi-proxy quantitative reconstruction, complemented by qualitative understanding of ecological responses generated by the analysis, remains a powerful tool in Quaternary palaeoclimate research.     

On the long-term context of the 1997–2009 ‘Big Dry’ in South-Eastern Australia: insights from a 206-year multi-proxy rainfall reconstruction

This study presents the first multi-proxy reconstruction of rainfall variability from the mid-latitude region of south-eastern Australia (SEA). A skilful rainfall reconstruction for the 1783–1988 period was possible using twelve annually-resolved palaeoclimate records from the Australasian region. An innovative Monte Carlo calibration and verification technique is introduced to provide the robust uncertainty estimates needed for reliable climate reconstructions. Our ensemble median reconstruction captures 33% of inter-annual and 72% of decadal variations in instrumental SEA rainfall observations. We investigate the stability of regional SEA rainfall with large-scale circulation associated with El Niño–Southern Oscillation (ENSO) and the Inter-decadal Pacific Oscillation (IPO) over the past 206 years. We find evidence for a robust relationship with high SEA rainfall, ENSO and the IPO over the 1840–1988 period. These relationships break down in the late 18th–early 19th century, coinciding with a known period of equatorial Pacific Sea Surface Temperature (SST) cooling during one of the most severe periods of the Little Ice Age. In comparison to a markedly wetter late 18th/early 19th century containing 75% of sustained wet years, 70% of all reconstructed sustained dry years in SEA occur during the 20th century. In the context of the rainfall estimates introduced here, there is a 97.1% probability that the decadal rainfall anomaly recorded during the 1998–2008 ‘Big Dry’ is the worst experienced since the first European settlement of Australia.     

The radio counterpart of the likely TeV binary HESS J0632+057

The few known γ-ray binary systems are all associated with variable radio and X-ray emission. The TeV source HESS J0632+057, apparently associated with the Be star MWC 148, is plausibly a new member of this class. Following the identification of a variable X-ray counterpart to the TeV source we conducted Giant Metrewave Radio Telescope (GMRT) and Very Large Array (VLA) observations in 2008 June–September to search for the radio counterpart of this object. A point-like radio source at the position of the star is detected in both 1280-MHz GMRT and 5-GHz VLA observations, with an average spectral index, α, of ∼0.6. In the VLA data there is significant flux variability on ∼month time-scales around the mean flux density of ≈0.3 mJy. These radio properties (and the overall spectral energy distribution) are consistent with an interpretation of HESS J0632+057 as a lower power analogue of the established γ-ray binary systems.     

Metabolic conversion of cyclohexane by Pacific salmon microsomal preparations

Hydrocarbons are being introduced into the marine environment from a variety of sources including combustion processes, crude oil spills, fuel oil spills, and controlled disposal such as processed ballast water. Even in the relatively clean waters of Alaska hydrocarbons are being released at an alarming rate. The purpose of this study was to determine the optimum conditions for the metabolism of a representative hydrocarbon by Coho Salmon Oncorhynchus kisutch liver microsomes. The product of cyclohexane metabolism in the salmon microsomal system was identified by gas chromatography-mass spectrometry as cyclohexanol. Conditions of the microsome incubation were varied systematically to determine the optimum temperature, pH, and ionic strength for cyclohexanol production. Cyclohexanol was quantified by capillary column gas chromatography. Maximum cyclohexanol formation was achieved at 20°C, a pH of 8·0–8·5 and an ionic strength of 0·026. A linear rate of cyclohexanol formation is seen from 0–60 min of incubation and there is an apparent decrease in the rate from 60–90 min. Poor stability of the microsomal preparation from the species studied was also identified and several stability studies have been undertaken using cyclohexane metabolism as a monitor.     

Hydrological modelling for assessing spatio-temporal groundwater recharge variations in the water-stressed Amathole Water Supply System,Eastern Cape,South Africa

To increase the resilience of regional water supply systems in South Africa in the face of anticipated climatic changes and a constant increase in water demand, water supply sources require diversification. Many water-stressed metropolitan regions in South Africa depend largely on surface water to cover their water demand. While climatic and river discharge data is widely available in these regions, information on groundwater resources – which could support supply source diversification – is scarce. Groundwater recharge is a key parameter that is used to estimate groundwater amounts that can be sustainably exploited at a sub-watershed level. Therefore, the objective of this study was to develop a reliable hydrological modelling routine that enables the assessment of regional spatio-temporal variations of groundwater recharge to discern the most promising areas for groundwater development. Accordingly, we present a semi-distributed hydrological modelling approach that incorporates water balance routines coupled with baseflow modelling techniques to yield spatio-temporal variations of groundwater recharge on a regional level. The approach is demonstrated for the actively managed catchment areas of the Amathole Water Supply System situated in a semi-arid part of the Eastern Cape of South Africa. In the investigated study area, annual groundwater recharge exhibits a high spatio-temporal heterogeneity and is estimated to vary between ~0.5% and 8% of annual rainfall. Despite some uncertainties induced by limited data availability, calibration and validation of the model were found to be satisfactory and yielded model results similar to (point) data of annual groundwater recharge reported in earlier studies. Our approach is therefore found to derive crucial information for efficiently targeting more detailed groundwater exploration studies and could work as a blueprint for orientating groundwater potential exploration in similar environments.