Influence of oyster culture practices and environmental conditions on the ecological status of intertidal mudflats in the Pertuis Charentais (SW France): a multi-index approach

The ecological quality status (EcoQ) of intertidal mudflats constrained by Pacific oyster farming was assessed by single (H’, AMBI, BENTIX and BOPA) and multimetric (M-AMBI and average score) index approaches in the Pertuis Charentais (SW France). Fifteen sampling stations were monitored seasonally for sedimentological features and macrozoobenthos in 2004. Sediments affected by oyster biodeposits showed organic matter enrichment, and sediments from off-bottom culture sites had higher organic matter contents and lower redox potentials than sediments from on-bottom culture sites. Biotic indices consistently registered responses of macrozoobenthos to organic enrichment but there was only partial agreement between single index-derived EcoQs. The average score was better than M-AMBI and single indices for determining EcoQs. Accordingly, oyster farming alters intertidal macrozoobenthic assemblages moderately, and off-bottom cultures cause more disturbance than on-bottom cultures. Hydrodynamics and seasons may interact with culture practices in smothering/strengthening biodeposition-mediated effects through dispersal/accumulation of biodeposits.     

Cloning and developmental expression of kinesin superfamily7 (kif7) in the brackish medaka (Oryzias melastigma), a close relative of the Japanese medaka (Oryzias latipes)

kif7 is a member of the kinesin superfamily members which are molecular motor proteins that move along microtubules in a highly regulated manner through ATP hydrolysis. In this paper, we report on the cloning of the Oryzias melastigma kif7 (omkif7) using primers designed according to the Japanese medaka (Oryzias latipes) database. The cloned omkif7 has an open reading frame of 3762bp and is deduced to encode a polypeptide of 1254 amino acids that possesses the putative ATP-binding and microtubule-binding motifs in its motor domain at the N-terminal region. We characterized the cloned omkif7 by comparison with the zebrafish kif7. Both omkif7 and zebrafish kif7 are shown to be expressed in all embryonic stages and adult tissues examined with higher expression level in the testis and ovary. Whole-mount in situ hybridization revealed that the expression of omkif7 is ubiquitous during the early stages of embryonic development, but became more restrictive and localized to the brain, fin bud and eye at later development. This study suggested that the brackish O.melastigma can serve as a good seawater model organism for developmental studies by utilizing the resources developed from its close relative of the Japanese medaka.     

Recycled water for augmenting urban streams in mediterranean-climate regions: a potential approach for riparian ecosystem enhancement

Abstract

The scarcity of water in mediterranean-climate regions makes flow management in the rehabilitation of urban streams problematic. To explore potential applications of using recycled water for stream enhancement, we examine streams in the San Francisco Bay Area of California, USA, to characterize: (a) historic flow regimes at the regional scale, (b) potential unintended ecological effects and (c) specific issues related to recycled water. We analysed historic flow regimes in five basins, performed a streamflow augmentation experiment and monitored benthic macroinvertebrates above and below a recycled-water discharge. Streamflow augmentation with recycled water can provide improved aesthetics and aquatic habitat, but there are caveats to consider. Implications of inputs of recycled water in streams, whether direct or indirect, require detailed analysis of trade-offs. Augmentation is unlikely to harm the ecology of urban streams that are now just barely flowing perennially with pools of stagnant, contaminated water, and it may reduce public health problems from mosquitoes.

Editor Z.W. Kundzewicz; Guest editor M. Acreman

Citation Lawrence, J.E., Pavia, C.P.W., Kaing, S., Bischel, H.N., Luthy, R.G., and Resh, V.H., 2014. Recycled water for augmenting urban streams in mediterranean-climate regions: a potential approach for riparian ecosystem enhancement. Hydrological Sciences Journal, 59 (3–4), 488–501.     

Methodological frameworks for the geography of organizations

In this paper, we present three methodological frameworks for the geographic study of organizations. These are situated within three meta-theoretical perspectives in human geography: spatial science, critical realism, and post-structuralism. Each framework offers a different theorization of organizations, and each prompts different research questions that can be used to guide their geographic study. The research questions we offer are general, and are pertinent to all types of organizations. To supplement the methodological contributions of this paper, we suggest how each of these frameworks might inform empirical investigations of Appalshop, a media arts organization located in Whitesburg, Kentucky.     

Impacts of volcanism on pre-European inhabitants of Taveuni, Fiji

 Taveuni is a Fijian ocean-island volcano that sporadically erupted throughout the Holocene. The 437-km² island is an active monogenetic volcanic field with a constantly shifting locus of activity along a single apparent rift axis. Although the eruptions were not large ( ≤VEI 2), unexpected shifts in Taveuni volcanism had the potential to affect habitation sites. Since known human settlement of the Fiji Group (ca. 950–750 BC), there have been at least 58 eruptions on Taveuni. Up to 25 of these eruptions potentially affected pre-European inhabitants of the island and at least four former occupation sites are known to have been affected by volcanic products. Despite apparent earliest settlement of Taveuni post-dating other nearby islands by up to 600 years, volcanism probably did not hinder or stall settlement of Taveuni compared with neighbouring islands. However, a period of voluminous eruptions between 300 and 500 AD covered much of south Taveuni with lava and/or thick tephra, apparently causing abandonment of at least this portion of Taveuni until approximately 1100 AD. Most eruptions were not of catastrophic proportions and, due to their localised effects, re-settlement was rapid in marginal unaffected areas. Localised stories and a relict place name survive to describe former eruption locations and effects since approximately 120–320 AD. Knowledge of the impacts on Taveuni's past inhabitants forms the basis of volcanic disaster-mitigation strategies to minimise future effects on the current 14,500 residents. Received: 9 September 1999 / Accepted: 21 February 1999     

Out-of-plane (SH) soil-structure interaction: a shear wall with rigid and flexible ring foundation

Soil-structure interaction (SSI) of a building and shear wall above a foundation in an elastic half-space has long been an important research subject for earthquake engineers and strong-motion seismologists. Numerous papers have been published since the early 1970s; however, very few of these papers have analytic closed-form solutions available. The soil-structure interaction problem is one of the most classic problems connecting the two disciplines of earthquake engineering and civil engineering. The interaction effect represents the mechanism of energy transfer and dissipation among the elements of the dynamic system, namely the soil subgrade, foundation, and superstructure. This interaction effect is important across many structure, foundation, and subgrade types but is most pronounced when a rigid superstructure is founded on a relatively soft lower foundation and subgrade. This effect may only be ignored when the subgrade is much harder than a flexible superstructure: for instance a flexible moment frame superstructure founded on a thin compacted soil layer on top of very stiff bedrock below. This paper will study the interaction effect of the subgrade and the superstructure. The analytical solution of the interaction of a shear wall, flexible-rigid foundation, and an elastic half-space is derived for incident SH waves with various angles of incidence. It found that the flexible ring (soft layer) cannot be used as an isolation mechanism to decouple a superstructure from its substructure resting on a shaking half-space.     

PHT3D‐UZF: A Reactive Transport Model for Variably‐Saturated Porous Media

A modified version of the MODFLOW/MT3DMS‐based reactive transport model PHT3D was developed to extend current reactive transport capabilities to the variably‐saturated component of the subsurface system and incorporate diffusive reactive transport of gaseous species. Referred to as PHT3D‐UZF, this code incorporates flux terms calculated by MODFLOW's unsaturated‐zone flow (UZF1) package. A volume‐averaged approach similar to the method used in UZF‐MT3DMS was adopted. The PHREEQC‐based computation of chemical processes within PHT3D‐UZF in combination with the analytical solution method of UZF1 allows for comprehensive reactive transport investigations (i.e., biogeochemical transformations) that jointly involve saturated and unsaturated zone processes. Intended for regional‐scale applications, UZF1 simulates downward‐only flux within the unsaturated zone. The model was tested by comparing simulation results with those of existing numerical models. The comparison was performed for several benchmark problems that cover a range of important hydrological and reactive transport processes. A 2D simulation scenario was defined to illustrate the geochemical evolution following dewatering in a sandy acid sulfate soil environment. Other potential applications include the simulation of biogeochemical processes in variably‐saturated systems that track the transport and fate of agricultural pollutants, nutrients, natural and xenobiotic organic compounds and micropollutants such as pharmaceuticals, as well as the evolution of isotope patterns.