Evolution of sand waves in the Messina Strait, Italy

In the present paper the morphodynamics of sand waves in the Messina Strait, Italy, is analysed by comparing data gathered during two different surveys carried out in 1991 and 2001, respectively. In particular, a morphometric analysis on the most recent data and a qualitative analysis of the differences between bottom bedform patterns, are carried out. At locations characterised by greater depths, only minor changes to the planimetric configuration of the field, i.e. crest orientation (which is seen to be orthogonal to the direction of net gross sand transport) and wave length are observed, while differences in wave length and crest direction are more evident in more shallow areas. On the other hand, wave height has significantly increased in the whole field. A possible explanation of such a change, based on the previsions of a theory which relates sand-wave growth and migration to the main components of the tidal ellipse, is provided.Responsible Editor: Jens Kappenberg     

Oscillations of galactic cosmic rays and solar indices before the arrival of relativistic solar protons

Using modern wavelet analysis techniques, we have made an attempt to search for oscillations of intensity of galactic cosmic rays (GCR), sunspot numbers (SS) and magnitudes of coronal index (CI) implying that the time evolution of those oscillations may serve as a precursor of Ground Level Enhancements (GLEs) of solar cosmic rays (SCR). From total number of 70 GLEs registered in 1942–2006, the four large events — 23 February 1956, 14 July 2000, 28 October 2003, and 20 January 2005 — have been chosen for our study. By the results of our analysis, it was shown that a frequency of oscillations of GCR decreases as time approaches to the event day. We have also studied a behaviour of common periodicities of GCR and SCR within the time interval of individual GLE. The oscillations of GLE occurrence rate (OR) at different stages of the solar activity (SA) cycle is of special interest. We have found some common periodicities of SS and CI in the range of short (2.8, 5.2, 27 and 60 days), medium (0.3, 0.5, 0.7, 1.3, 1.8 and 3.2 years) and long (4.6 and 11.0 years) periods. Short and medium periodicities, in general, are rather concentrated around the maxima of solar cycles and display the complex phase relations. When comparing these results with the behaviour of OR oscillations we found that the period of 11 years is dominating (controlling); it is continuous over the entire time interval of 1942–2006, and during all this time it displays high synchronization and clear linear ratios between the phases of oscillations of η, SS and CI. It implies that SCR generation is not isolated stochastic phenomena characteristic exclusively for chromospheric and/or coronal structures. In fact, this process may have global features and involve large regions in the Sun’s atmosphere.     

Using a H∞ filter assimilation procedure to estimate root zone soil water content

Root zone soil water content impacts plant water availability, land energy and water balances. Because of unknown hydrological model error, observation errors and the statistical characteristics of the errors, the widely used Kalman filter (KF) and its extensions are challenged to retrieve the root zone soil water content using the surface soil water content. If the soil hydraulic parameters are poorly estimated, the KF and its extensions fail to accurately estimate the root zone soil water. The H‐infinity filter (HF) represents a robust version of the KF. The HF is widely used in data assimilation and is superior to the KF, especially when the performance of the model is not well understood. The objective of this study is to study the impact of uncertain soil hydraulic parameters, initial soil moisture content and observation period on the ability of HF assimilation to predict in situ soil water content. In this article, we study seven cases. The results show that the soil hydraulic parameters hold a critical role in the course of assimilation. When the soil hydraulic parameters are poorly estimated, an accurate estimation of root soil water content cannot be retrieved by the HF assimilation approach. When the estimated soil hydraulic parameters are similar to actual values, the soil water content at various depths can be accurately retrieved by the HF assimilation. The HF assimilation is not very sensitive to the initial soil water content, and the impact of the initial soil water content on the assimilation scheme can be eliminated after about 5–7 days. The observation interval is important for soil water profile distribution retrieval with the HF, and the shorter the observation interval, the shorter the time required to achieve actual soil water content. However, the retrieval results are not very accurate at a depth of 100 cm. Also it is complex to determine the weighting coefficient and the error attenuation parameter in the HF assimilation. In this article, the trial‐and‐error method was used to determine the weighting coefficient and the error attenuation parameter. After the first establishment of limited range of the parameters, ‘the best parameter set’ was selected from the range of values. For the soil conditions investigated, the HF assimilation results are better than the open‐loop results. Copyright © 2010 John Wiley & Sons, Ltd.     

Jason-1: Assessment of the System Performances

On 7 December 2001, Jason-1 was successfully launched by a Boeing Delta II rocket from the Vandenberg Air Force Base, California. The Jason-1 satellite will maintain the high accuracy altimeter service provided since 1992 by TOPEX/Poseidon (T/P), ensuring the continuity in observing and monitoring the Ocean Dynamics (intraseasonal to interannual changes, mean sea level, tides, etc.). Despite one-fourth the mass and power, the Jason-1 system has been designed to have basically the same performance as T/P, measuring sea surface topography at a centimetric level. This new CNES/NASA mission also provides near real-time data for sea state and ocean forecast. The first two months of the Jason-1 mission have been dedicated to the assessment of the overall system. The goals of this assessment phase were:

1. To assess the behavior of the spacecraft at the platform and payload levels (Jason-1 being the first program to call on the PROTEUS versatile multimission platform for Low and Medium Earth Orbit Missions developed in partnership between Alcatel Space and CNES);

2. To verify that platform performance requirements are met with respect to Jason-1 requirements;

3. To verify that payload instruments performance requirements evaluated at instrument level are met;

4. To assess the performance of the Jason-1 Ground System.

This article will display the main outputs of the assessment of the system. It will demonstrate that all the elements of the onboard and ground systems are within the specifications. Provision of data to the Jason-1 Science Working Team started at the end of March 2002. This is the goal of a six-month phase after closure of the initial assessment phase to derive the error budget of the system in terms of altimetry user products.     

A review of eastern tropical Pacific oceanography: Summary

The collection of articles in this volume reviewing eastern tropical Pacific oceanography is briefly summarized, and updated references are given. The region is an unusual biological environment as a consequence of physical characteristics and patterns of forcing – including a strong and shallow thermocline, the ITCZ and coastal wind jets, equatorial upwelling, the Costa Rica Dome, eastern boundary and equatorial current systems, low iron input, inadequate ventilation of subthermocline waters, and dominance of ENSO-scale temporal variability. Remaining unanswered questions are presented.     

Primary production in the eastern tropical Pacific: A review

The eastern tropical Pacific includes 28 million km² of ocean between 23.5°N and S and Central/South America and 140°W, and contains the eastern and equatorial branches of the north and South Pacific subtropical gyres plus two equatorial and two coastal countercurrents. Spatial patterns of primary production are in general determined by supply of macronutrients (nitrate, phosphate) from below the thermocline. Where the thermocline is shallow and intersects the lighted euphotic zone, biological production is enhanced. In the eastern tropical Pacific thermocline depth is controlled by three interrelated processes: a basin-scale east/west thermocline tilt, a basin-scale thermocline shoaling at the gyre margins, and local wind-driven upwelling. These processes regulate supply of nutrient-rich subsurface waters to the euphotic zone, and on their basis we have divided the eastern tropical Pacific into seven main regions. Primary production and its physical and chemical controls are described for each.Enhanced rates of macronutrient supply maintains levels of primary production in the eastern tropical Pacific above those of the oligotrophic subtropical gyres to the north and south. On the other hand lack of the micronutrient iron limits phytoplankton growth (and nitrogen fixation) over large portions of the open-ocean eastern tropical Pacific, depressing rates of primary production and resulting in the so-called high nitrate-low chlorophyll condition. Very high rates of primary production can occur in those coastal areas where both macronutrients and iron are supplied in abundance to surface waters. In these eutrophic coastal areas large phytoplankton cells dominate; conversely, in the open-ocean small cells are dominant. In a ‘shadow zone’ between the subtropical gyres with limited subsurface ventilation, enough production sinks and decays to produce anoxic and denitrified waters which spread beneath very large parts of the eastern tropical Pacific.Seasonal cycles are weak over much of the open-ocean eastern tropical Pacific, although several eutrophic coastal areas do exhibit substantial seasonality. The ENSO fluctuation, however, is an exceedingly important source of interannual variability in this region. El Niño in general results in a depressed thermocline and thus reduced rates of macronutrient supply and primary production. The multi-decadal PDO is likely also an important source of variability, with the ‘El Viejo’ phase of the PDO resulting in warmer and lower nutrient and productivity conditions similar to El Niño.On average the eastern tropical Pacific is moderately productive and, relative to Pacific and global means, its productivity and area are roughly equivalent. For example, it occupies about 18% of the Pacific Ocean by area and accounts for 22–23% of its productivity. Similarly, it occupies about 9% of the global ocean and accounts for 10% of its productivity. While representative, these average values obscure very substantial spatial and temporal variability that characterizes the dynamics of this tropical ocean.     

An optimized method for automated analysis of algal pigments by HPLC

A recent development in algal pigment analysis by high-performance liquid chromatography (HPLC) is the application of automation. An optimization of a complete sampling and analysis protocol applied specifically in automation has not yet been performed. In this paper we show that automation can only be successful if the various methodological aspects of the sampling and analysis protocol are considered in coherence. We introduce an optimized protocol that involves freeze-drying of the sample, subsequent extraction in 90% acetone and the application of water-packing during analysis. The method was evaluated on both natural plankton populations and a broad spectrum of microalgal cultures: Thalassiosira weisflogii (Bacillariophyceae), Emiliania huxleyi (Prymnesiophyceae), Phaeocystis globosa and Phaeocystis antarctica (Prymnesiophyceae) and Pyramimonas sp. (Prasinophyceae). Whereas pigment extracts were unstable in methanol, with recorded chlorophyll a losses from 10% to 60% per day, pigment degradation rates in acetone were generally less than 1% over 18 h storage in the autosampler (4 °C). In addition, it was found that the extraction efficiency of acetone significantly increased upon freeze-drying prior to extraction. Increases as high as 50–60% were measured in P. antarctica. The application of water-packing of the sample during injection resulted in improved peak shape and peak separation, without diluting the pigment concentrations. Automation is especially beneficial for application in the field, when mixed algal assemblages and low biomass put a high demand on the sensitivity as well as reproducibility of the method.     

Distributions of dissolved and particulate biogenic thiols in the subartic Pacific Ocean

Dissolved and particulate concentrations of the biogenic thiols cysteine (Cys), arginine–cysteine (Arg–Cys), glutamine–cysteine (Gln–Cys), γ-glutamate–cysteine (γ-Glu–Cys) and glutathione (GSH) were measured in the subartic Pacific Ocean in the summer of 2003 using high performance liquid chromatography (HPLC) with precolumn derivatization as reported in previous work. In this study, a preconcentration protocol for the derivatized thiols was utilized to extend detection limits of dissolved thiols to picomolar levels. The measured concentrations of particulate and dissolved thiols were uncoupled, with distinctive depth profiles and large differences in the particulate to dissolved ratios between individual compounds. Glutathione was the most abundant particulate thiol whereas the most abundant dissolved thiol was γ-Glu–Cys, with concentrations as high as 15 nM. Given the relatively small pool of intracellular γ-Glu–Cys and the very low dissolved concentrations of GSH, we hypothesize that glutathione released from cells is rapidly converted to the potentially degradation resistant γ-Glu–Cys outside the cell. The relatively high concentrations of other dissolved thiols compared to particulate concentrations implies both biological exudation and slow degradation rates. Some thiols appear to vary with changes in nutrient availability but this effect is difficult to decouple from changes in community structure inferred from pigment analyses. Dissolved thiol concentrations also exceed typical metal concentrations in the subartic Pacific, supporting previous arguments that they may be important in metal speciation.