Teasing apart activities of different types of ABC efflux pumps in bivalve gills using the concepts of independent action and concentration addition

Fluorescent dyes and inhibitor compounds are commonly used to detect activity of multixenobiotic resistance (MXR) efflux pumps in marine invertebrates. We here address the question whether compounds acting as specific inhibitors of certain mammalian transporters can be used in dye efflux assays to distinguish different transporter activities in gill tissue from a marine mussel. We quantified effects of PSC833, a specific inhibitor of mammalian P-gp (P-glycoprotein, ABCB1), and MK571, which blocks MRP (Multidrug resistance associated protein, ABCC) type transporters, on calcein-am efflux in gill tissue of Mytilus californianus. Calcein-am acts as a substrate of both P-gp and MRP. Effects of single compounds and mixtures were determined and combined effect models predicting independent action (IA) and concentration addition (CA) of the chemicals were applied. Effect values predicted by IA showed better correspondence with the experimentally obtained data. This indicates that the inhibitor compounds target different mechanisms of calcein-am efflux and points to P-gp and MRP activities in mussel gills. Our approach could be a simple way for identifying the efflux transporter types targeted by chemosensitizers, including environmentally relevant compounds, in native tissues from marine invertebrates.     

The geomorphology of the Anthropocene: emergence,status and implications

The Anthropocene is proposed as a new interval of geological time in which human influence on Earth and its geological record dominates over natural processes. A major challenge in demarcating the Anthropocene is that the balance between human‐influenced and natural processes varies over spatial and temporal scales owing to the inherent variability of both human activities (as associated with culture and modes of development) and natural drivers (e.g. tectonic activity and sea level variation). Against this backdrop, we consider how geomorphology might contribute towards the Anthropocene debate by focusing on human impact on aeolian, fluvial, cryospheric and coastal process domains, and how evidence of this impact is preserved in landforms and sedimentary records. We also consider the evidence for an explicitly anthropogenic geomorphology that includes artificial slopes and other human‐created landforms. This provides the basis for discussing the theoretical and practical contributions that geomorphology can make to defining an Anthropocene stratigraphy. It is clear that the relevance of the Anthropocene concept varies considerably amongst different branches of geomorphology, depending on the history of human actions in different process domains. For example, evidence of human dominance is more widespread in fluvial and coastal records than in aeolian and cryospheric records, so geomorphologically the Anthropocene would inevitably comprise a highly diachronous lower boundary. Even to identify this lower boundary, research would need to focus on the disambiguation of human effects on geomorphological and sedimentological signatures. This would require robust data, derived from a combination of modelling and new empirical work rather than an arbitrary ‘war of possible boundaries' associated with convenient, but disputed, ‘golden’ spikes. Rather than being drawn into stratigraphical debates, the primary concern of geomorphology should be with the investigation of processes and landform development, so providing the underpinning science for the study of this time of critical geological transition. Copyright © 2016 John Wiley & Sons, Ltd.     

Effects of gradient,distance, curvature and aspect on steep burned and unburned hillslope soil erosion and deposition

Wildfire denudes vegetation and impacts chemical and physical soil properties, which can alter hillslope erosion rates. Post‐wildfire erosion can also contribute disproportionately to long‐term erosion rates and landscape evolution. Post‐fire hillslope erosion rates remain difficult to predict and document at the hillslope scale. Here we use ²¹⁰Pb_aex (lead‐210 mineral‐adsorbed excess) inventories to describe net sediment erosion on steep, convex hillslopes in three basins (unburned, moderately and severely burned) in mountainous central Idaho. We analyzed nearly 300 soil samples for ²¹⁰Pb_aex content with alpha spectrometry and related net sediment erosion to burn severity, aspect, gradient, curvature and distance from ridgetop. We also tested our data against models for advective, linear and non‐linear diffusive erosion. Statistically lower net soil losses on north‐ versus south‐facing unburned hillslopes suggest that greater vegetative cover and soil cohesion on north‐facing slopes decrease erosion. On burned hillslopes, erosion differences between aspects were less apparent and net erosion was more variable, indicating that vegetation influences erosion magnitude and fire drives erosion variability. We estimated net soil losses throughout the length of unburned hillslopes, including through a footslope transition to concave form. In contrast, on burned hillslopes, the subtle shift from convex to concave form was associated with deposition of a post‐fire erosion pulse. Such overall patterns of erosion and deposition are consistent with predictions from a non‐linear diffusion equation. This finding also suggests that concave sections of overall convex hillslopes affect post‐disturbance soil erosion and deposition. Despite these patterns, no strong relationships were evident between local net soil losses and gradient, curvature, distance from ridgetop, or erosion predicted with advection or diffusion equations. The observed relationship between gradient and erosion is therefore likely more complex or stochastic than often described theoretically, especially over relatively short timescales (60–100 years). Copyright © 2016 John Wiley & Sons, Ltd.     

Flow under standing waves: Part 1. Shear stress distribution,energy flux and steady streaming

The conditions for energy flux, momentum flux and the resulting streaming velocity are analysed for standing waves formed in front of a fully reflecting wall. The exchange of energy between the outer wave motion and the near bed oscillatory boundary layer is considered, determining the horizontal energy flux inside and outside the boundary layer. The momentum balance, the mean shear stress and the resulting time averaged streaming velocities are determined. For a laminar bed boundary layer the analysis of the wave drift gives results similar to the original work of Longuet–Higgins from 1953. The work is extended to turbulent bed boundary layers by application of a numerical model. The similarities and differences between laminar and turbulent flow conditions are discussed, and quantitative results for the magnitude of the mean shear stress and drift velocity are presented. Full two-dimensional simulations of standing waves have also been made by application of a general purpose Navier–Stokes solver. The results agree well with those obtained by the boundary layer analysis. Wave reflection from a plane sloping wall is also investigated by using the same numerical model and by physical laboratory experiments. The phase shift of the reflected wave train is compared with theoretical and empirical models.     

Columbite SN3: A New Potential Reference Material for U-Pb Dating by LA-ICP-MS

Columbite-tantalite LA-ICP-MS U-Pb dating is a fast and useful method to determine the age of rare-metal deposits and fingerprint the provenance of columbite-tantalite ore concentrates. Accurate LA-ICP-MS U-Pb dating requires matrix-matched reference materials. We analysed three columbite-tantalite samples (SN3, HND and RL2) from China using ID-TIMS and LA-ICP-MS to assess their potential as reference materials for in situ U-Pb dating. Coltan 139 and these three columbite-tantalite samples with variable compositions yielded internally consistent LA-ICP-MS U-Pb ages when using each other for calibration and the weighted mean ²⁰⁶Pb/²³⁸U ages are comparable to respective ID-TIMS ages. Composition-dependent U-Pb fractionation seems to be insignificant under the LA-ICP-MS conditions used. Sample SN3 has a low percentage of heterogeneity for ²⁰⁶Pb/²³⁸U ages (4%) with low common Pb contributions (f₂₀₆ < 1%) and shows a good potential in calibrating unknown samples as primary reference material for LA-ICP-MS analysis. Samples RL2 and HND have altered sections characterised by high LREE contents, flat LREE patterns and old ²⁰⁶Pb/²³⁸U apparent ages, and are not suited as reference materials. The low ²⁰⁷Pb/²⁰⁶Pb intercepts for samples RL2 and HND lack geological meaning but provide strong evidence that the disturbed U-Pb systematics with anomalous apparent ²⁰⁶Pb/²³⁸U ages is a secondary feature.     

Risk acceptance criterion for tanker oil spill risk reduction measures

This paper is aimed at investigating whether there is ample support for the view that the acceptance criterion for evaluating measures for prevention of oil spills from tankers should be based on cost-effectiveness considerations. One such criterion can be reflected by the Cost of Averting a Tonne of oil Spilt (CATS) whereas its target value is updated by elaborating the inherent uncertainties of oil spill costs and establishing a value for the criterion’s assurance factor. To this end, a value of $80,000/t is proposed as a sensible CATS criterion and the proposed value for the assurance factor F = 1.5 is supported by the retrieved Protection and Indemnity (P&I) Clubs’ Annual Reports. It is envisaged that this criterion would allow the conversion of direct and indirect costs into a non-market value for the optimal allocation of resources between the various parties investing in shipping. A review of previous cost estimation models on oil spills is presented and a probability distribution (log-normal) is fitted on the available oil spill cost data, where it should be made abundantly clear that the mean value of the distribution is used for deriving the updated CATS criterion value. However, the difference between the initial and the updated CATS criterion in the percentiles of the distribution is small. It is found through the current analysis that results are partly lower than the predicted values from the published estimation models. The costs are also found to depend on the type of accident, which is in agreement with the results of previous studies. Other proposals on acceptance criteria are reviewed and it is asserted that the CATS criterion can be considered as the best candidate. Evidence is provided that the CATS approach is practical and meaningful by including examples of successful applications in actual risk assessments. Finally, it is suggested that the criterion may be refined subject to more readily available cost data and experience gained from future decisions.     

Dolomite Controls on Phanerozoic Seawater Chemistry

We investigate the potential role of dolomite as a long-term buffer on Phanerozoic seawater composition. Using a comprehensive model of Phanerozoic geochemical cycling, we show how variations in the formation rate of sedimentary marine dolomite have buffered seawater saturation state. The total inventory of inorganic carbon reflects the sum of fluxes derived from continental weathering, basalt-seawater exchange, alumino-silicate diagenesis (reverse weathering), and global deposition of calcium carbonate. Although these fluxes are approximately balanced, model results indicate that seawater saturation state is sensitive to the marine dolomite depositional flux. This conclusion is consistent with and constrained by independent proxy data for seawater ion ratios, paleo-atmospheric CO₂ concentrations, and paleo-pH data, and dolomite mass-age distribution through Phanerozoic time. Abundant research indicates that dolomite’s occurrence in marine sediments is sensitive to many factors: temperature, seawater composition, paleogeographic setting, continental organization, etc. Although the complexity of the process of dolomite formation prevents a complete understanding of the relative role of these factors, our model results clearly underscore the importance of this mineral in the chemical history of Phanerozoic seawater.     

Computations with finite element methods for the Brinkman problem

Various finite element families for the Brinkman flow (or Stokes–Darcy flow) are tested numerically. Particularly, the effect of small permeability is studied. The tested finite elements are the MINI element, the Taylor–Hood element, and the stabilized equal order methods. The numerical tests include both a priori analysis and adaptive methods.     

The Cenozoic western Svalbard margin: sediment geometry and sedimentary processes in an area of ultraslow oceanic spreading

The northeastern high-latitude North Atlantic is characterised by the Bellsund and Isfjorden fans on the continental slope off west Svalbard, the asymmetrical ultraslow Knipovich spreading ridge and a 1,000 m deep rift valley. Recently collected multichannel seismic profiles and bathymetric records now provide a more complete picture of sedimentary processes and depositional environments within this region. Both downslope and alongslope sedimentary processes are identified in the study area. Turbidity currents and deposition of glacigenic debris flows are the dominating downslope processes, whereas mass failures, which are a common process on glaciated margins, appear to have been less significant. The slide debrite observed on the Bellsund Fan is most likely related to a 2.5–1.7 Ma old failure on the northwestern Barents Sea margin. The seismic records further reveal that alongslope current processes played a major role in shaping the sediment packages in the study area. Within the Knipovich rift valley and at the western rift flank accumulations as thick as 950–1,000 m are deposited. We note that oceanic basement is locally exposed within the rift valley, and that seismostratigraphic relationships indicate that fault activity along the eastern rift flank lasted until at least as recently as 1.5 Ma. A purely hemipelagic origin of the sediments in the rift valley and on the western rift flank is unlikely. We suggest that these sediments, partly, have been sourced from the western Svalbard—northwestern Barents Sea margin and into the Knipovich Ridge rift valley before continuous spreading and tectonic activity caused the sediments to be transported out of the valley and westward.