NPZ Models of Plankton Dynamics: Their Construction, Coupling to Physics, and Application

Nutrient-phytoplankton-zooplankton (NPZ) models have been in use in oceanography for at least three decades, and are still a common research tool. Given the discoveries of the last two decades, particularly concerning the role of bacteria in the plankton, there are questions as to whether NPZ models can still be supported as a useful tool in planktonic research. Here I review the construction of NPZ models, and some of the physical platforms they have been coupled to. I then discuss the applications of NPZ-physical models, and conclude that they still constitute an important and viable research tool, provided that the questions being explored are clearly stated. This revised version was published online in August 2006 with corrections to the Cover Date.     

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Moisture sorption behaviour of salt mixtures in porous stone

Moisture in stone material is the key factor for all stone deterioration processes and also in weathering of cultural heritage. With additional presence of salts in the material the situation gets even more critical. While the properties of pure salts with moisture are well known, knowledge about the interaction of salt mixtures with moisture is still poor. In different approaches the reactions of salt-contaminated stone material on changing moisture were tested in the laboratory. Experiments with different solutions in the Na-Mg-SO₄-NO₃-H₂O system revealed interesting new results on the moisture behaviour of salt-contaminated samples. Theoretical considerations and computer simulations are helpful to interpret the data obtained, but are not yet sufficient to explain the real processes acting on site at the monuments. More encouraging to this fact are complementary studies on visible efflorescences in the same salt system. It is shown how by experimental approaches the understanding on salt-induced stone deterioration is strongly complemented.     

Economic assessment of production of flour from Prosopis alba and P. pallida pods for human food applications.

This paper presents a detailed cost accounting of the processes involved in the production of flours from the mesocarps of the fruits of Prosopis alba and P. pallida to be used in human foods. The flours from both species are similar and contain 7–8% protein, 0·8–2% fat, 26–32% total dietary fiber and 48–59% sucrose. The data were based on actual production rates in use at the Universidad de Piura pilot plant using simple machinery. Machinery hourly charges were based on equivalent rental costs in order to avoid interest charge calculations. As opposed to other analyses which only included processing costs delivered to the plant, our analysis ascribed value to the owner of the trees in order to provide incentives to plant and care for the trees. The sensitivity analyses showed that the most economically important factor was the conversion efficiency of pods into flour. When a 40% conversion efficiency, such as that which has been obtained in both Peru and Argentina was obtained, and by-product credits for high fiber containing fraction were assumed, the wholesale selling price with a 5% marketing cost and a 40% profit direct costs was estimated to be $0·66 kg⁻¹ for Peru (using a $0·40 h⁻¹ labor rate ) and $1·76 kg⁻¹ for Argentina (using a $1·5 h⁻¹ labor rate).     

Carbon isotopes and iodine concentrations in a Mississippi River delta core recording land use, sediment transport, and dam building in the river's drainage basin

Sedimentary material from coastal and nearshore areas in the Mississippi Delta region are comprised of different organic carbon sources with diverse ages that require isotopic and elemental records for resolving the various sources of plant residues. Carbon isotopic ((13)C, (14)C) values were used to differentiate contributions from plants using the C3, C4, and/or CAM (crassulacean acid metabolism) carbon fixation pathways., and iodine concentrations indicated that wetland plant residues are a significant source of organic carbon in a sediment core from the Mississippi River delta region collected at a 60 m water depth. This sediment core had been extensively described in Oktay et al. [Oktay, S.D., Santschi, P.H., Moran, J.E., Sharma, P., 2000. The (129)Iodine Bomb Pulse Recorded in Mississippi River delta Sediments: Results from Isotopes of I, Pu, Cs, Pb, and C. Geochim. Cosmochim. Acta 64 (6), 989-996.] and significantly, includes unique features that had not previously been seen in the marine environment. These special features include a plutonium isotopic close-in fallout record that indicates a purely terrestrial source for these sediment particles and the elements associated with it, and a distinct iodine isotopic peak (as well as peaks for plutonium and cesium isotopes) that indicate little bioturbation in this core. Our carbon isotopic and iodine data can thus be compared to published records of changes in drainage basin land use, river hydrology, and hydrodynamic sorting of suspended particles to elucidate if these changes are reflected in nearshore sediments. This comparison suggests a significant contribution for organic carbon (OC) from C4 plants to these sediments during the 1950's to early 1960's. Relative older carbon isotopes, and episodically high iodine concentrations (up to 34 ppm) were observed during this time period that (1) indicate sediment deposition that is coincident with the times of major hydrological changes induced from dam and levee building in both the upper and lower reaches of the Mississippi River drainage basin, and (2) suggest episodic organic carbon deposition from wetland plant residues.     

Modeling the Population Effects of Hypoxia on Atlantic Croaker (<Emphasis Type="Italic">Micropogonias undulatus</Emphasis>) in the Northwestern Gulf of Mexico: Part 1—Model Description and Idealized Hypoxia

We developed a spatially explicit, individual-based model to analyze how hypoxia effects on reproduction, growth, and mortality of Atlantic croaker in the northwestern Gulf of Mexico lead to population-level responses. The model follows the hourly growth, mortality, reproduction, and movement of individuals on a 300 × 800 spatial grid of 1-km² cells for 140 years. Chlorophyll-a concentration, water temperature, and dissolved oxygen (DO) were specified daily for each grid cell and repeated for each year of the simulation. A bioenergetics model was used to represent growth, mortality was assumed stage- and age-dependent, and the movement behavior of juveniles and adults was modeled based on temperature and avoidance of low DO. Hypoxia effects were imposed using exposure effect submodels that converted time-varying exposures to low DO to reduced hourly growth, increased hourly mortality, and reduced annual fecundity. Results showed that 100 years of either mild or intermediate hypoxia produced small reductions in population abundance, while repeated severe hypoxia caused a 19% reduction in long-term population abundance. Relatively few individuals were exposed to low DO each hour, but many individuals experienced some exposure. The response was dominated by a 5% average reduction in annual fecundity of individuals. Under conditions of random sequences of mild, intermediate, and severe hypoxia years occurring in proportion to their historical frequency, the model predicted a 10% decrease in the long-term population abundance of croaker. A companion paper substitutes hourly DO values from a three-dimensional water quality model for the idealized hypoxia and results in a more realistic population reduction of about 25%.     

The Pemali Formation of Central Java and equivalents: Indicators of sedimentation on an active plate margin

The Pemali Formation is revised from being the oldest known sedimentary unit in north Central Java to being almost the youngest. This, and a new examination of its composition, has implications for regional geological models and petroleum geology. The Pemali Formation was originally interpreted as “early Miocene” but is now shown to be latest Miocene through Pliocene in age, and characterised by both very high rates of sedimentation and a particularly high degree of reworking. The mid-Late Miocene tectonic event that initiated deposition of this formation created a new series of basins that were filled by erosion of new structural highs. Continuing constriction of the basins resulted in the uplift of older Pemali sediments on the basin margins, being reworked into the youngest Pemali strata.Neither the Pemali Formation nor the associated uplift and erosion are seen in the basins in the Java Sea a short distance to the north. Both the severe effects of the mid-Late Miocene tectonism and the Pemali-type sediments are restricted to a particular geologic zone, which is roughly the same as the modern island of Java. This may be above lithosphere of mixed terranes that forms a rim to the sialic Sunda Plate. The onshore Java area has a history of severe tectonism through the Tertiary and consequently a stratigraphy that greatly contrasts with that of the present-day Java Sea.The localised and thick Pemali deposition affected the burial history and the generation of hydrocarbons around the mid-Late Miocene basins, whilst the uplifted areas may include hydrocarbon traps. If basement composition influenced the location and thickness of the Pemali Formation then it is also likely to have fundamentally controlled deposition of older formations, including the unknown source rock for surface oil seeps. Likewise, these controls appear to contrast strongly with the better known rift-sag basins of the Java Sea.     

Transient sediment supply in a high‐altitude Alpine environment evidenced through a 10Be budget of the Etages catchment (French Western Alps)

Although beryllium‐10 (¹⁰Be) concentrations in stream sediments provide useful synoptic views of catchment‐wide erosion rates, little is known on the relative contributions of different sediment supply mechanisms to the acquisition of their initial signature in the headwaters. Here we address this issue by conducting a ¹⁰Be‐budget of detrital materials that characterize the morphogenetic domains representative of high‐altitude environments of the European Alps. We focus on the Etages catchment, located in the Ecrins‐Pelvoux massif (southeast France), and illustrate how in situ ¹⁰Be concentrations can be used for tracing the origin of the sand fraction from the bedload in the trunk stream. The landscape of the Etages catchment is characterized by a geomorphic transient state, high topographic gradients, and a large variety of modern geomorphic domains ranging from glacial environments to scarcely vegetated alluvial plains. Beryllium‐10 concentrations measured in the Etages catchment vary from ~1 × 10⁴ to 4.5 × 10⁵ atoms per gram quartz, while displaying consistent ¹⁰Be signatures within each representative morphogenetic unit. We show that the basic requirements for inferring catchment‐wide denudation from ¹⁰Be concentration measurements are not satisfied in this small, dynamic catchment. However, the distinct ¹⁰Be signature observed for the geomorphic domains can be used as a tracer. We suggest that a terrestrial cosmogenic nuclide (TCN) budget approach provides a valuable tool for the tracing of material origin in basins where the ‘let nature do the averaging’ principles may be violated. Copyright © 2013 John Wiley & Sons, Ltd.