A community-wide intercomparison exercise for the determination of dissolved iron in seawater

The first large-scale international intercomparison of analytical methods for the determination of dissolved iron in seawater was carried out between October 2000 and December 2002. The exercise was conducted as a rigorously “blind” comparison of 7 analytical techniques by 24 international laboratories. The comparison was based on a large volume (700 L), filtered surface seawater sample collected from the South Atlantic Ocean (the “IRONAGES” sample), which was acidified, mixed and bottled at sea. Two 1-L sample bottles were sent to each participant. Integrity and blindness were achieved by having the experiment designed and carried out by a small team, and overseen by an independent data manager. Storage, homogeneity and time-series stability experiments conducted over 2.5 years showed that inter-bottle variability of the IRONAGES sample was good (< 7%), although there was a decrease in iron concentration in the bottles over time (0.8–0.5 nM) before a stable value was observed. This raises questions over the suitability of sample acidification and storage.     

Swath mapping of the seafloor and its application to deep-bottom fisheries in New Caledonia

A bottom longline fishery operated in the EEZ of New Caledonia from 1988 to 1991. Fishing focused on five seamounts with summits at depths ranging from 500 to 750 m. The target species was alfonsino, Beryx splendens. As the soundings available from marine charts were not detailed enough, the fishing masters had to make their own charts in order to set the gear in the right location. A series of 11 scientific cruises devoted to a research program on alfonsino was launched in late 1991. During the first scientific cruises, several days were spent mapping the seabed to improve the existing knowledge of the topography of three seamounts by coupling the EDO echosounder depth measurements to the GPS positions. As this procedure is slow, it is applicable to limited areas or, if a wider grid is used, to large zones to locate major structures such as ridges and seamounts. The emergence of the multibeam echosounder has greatly improved seabed mapping performance. This tool seems to fit the requirement of exploratory deep-bottom fishing particularly well, as it covers large areas while providing details of the bottom. The EM 12 was used to obtain bathymetry and imagery of the SE portion of the EEZ of New Caledonia, covering an approximate area of 70,000 km² in two weeks. For depths ranging from 500 to 4,500 m, the results were impressive. They confirmed the known major features and provided greater topographical detail, revealing fine unknown structures. They also provided information on the type of substratum, information which might influence the fishing strategy. Finally, they made it possible to obtain an accurate estimate of the exploitable area which in turn led to new stock estimates.     

Diel variation of benthic respiration in a coral reef sediment (Reunion Island,Indian Ocean)

Oxygen and total dissolved inorganic carbon (DIC) fluxes at the water–sediment interface were measured using benthic chambers to assess the short-term variations of community respiration (CR) in the back reef sediments of Reunion Island (Indian Ocean). Benthic CR had a daily cycle of minimal (6:00 AM) and maximal values (6:00 PM), showing increases of oxygen and DIC fluxes of 2.8- and 3.8-fold, respectively. Average CR values were observed at midday and midnight. The evolution of fluxes was positively related to oxygen concentration in ambient water, but not to temperature changes. In the study area, high daytime primary production augments the amount of energy available for community metabolism and increases benthic respiration. The benthic communities are therefore subjected to short-term variable environmental conditions with oxygen supersaturation during the day, and moderately hypoxic conditions at the end of the night.     

Shallow-water longshore drift-fed submarine fan deposition (Moisie River Delta, Eastern Canada)

Submarine canyons and associated submarine fans are in some cases located at the end of a littoral cell where they act as conduits for the transfer of eroded terrigenous sediments to the marine environment. Such fans are generally found in deep-water settings at >500 m water depth. Offshore the Moisie River Delta (NW Gulf of St. Lawrence, Eastern Canada), high-resolution multibeam bathymetry and seismic data led to the discovery of an unusually shallow submarine fan (≤60 m) located at the end of a littoral cell. Sediment is transported westward on the shallow coastal shelf, as demonstrated by the downcurrent displacement of oblique nearshore sandbars where the shelf narrows to less than 1 km. The steep slope near the end of the littoral cell is incised by a channel that feeds a submarine fan composed of smaller channels and depositional lobes. According to existing Holocene evolution models for the region, the fan formed within the last 5,000 years. Its evolution is largely due to the transport of sediment by longshore drift. Multibeam echosounder and seismic data also reveal that the gravity-driven accretion of the submarine fan is characterized mainly by two processes, i.e., frequent small-scale, downslope migration of sandwaves on the slope, and more episodic slumping/turbidity-current activity in the deeper part of the fan. This study documents that, besides their common deep-water location, smaller-scale submarine fans can occur also in very shallow water, implying that they could be more frequent than previously thought both in modern environments and in the rock record.     

Persian Gulf response to a wintertime shamal wind event

The results from a～1 km resolution HYbrid Coordinate Ocean Model (HYCOM), forced by 1/2° Navy Operational Global Atmospheric Prediction System (NOGAPS) atmospheric data, were used in order to study the dynamic response of the Persian Gulf to wintertime shamal forcing. Shamal winds are strong northwesterly winds that occur in the Persian Gulf area behind southeast moving cold fronts. The period from 20 November to 5 December 2004 included a well defined shamal event that lasted 4–5 days. In addition to strong winds (16 m s^?1) the winter shamal also brought cold dry air (T_a=20 °C, q_a=10 g kg^?1) which led to a net heat loss in excess of 1000 W m^?2 by increasing the latent heat flux. This resulted in SST cooling of up to 10 °C most notably in the northern and shallower shelf regions. A sensitivity experiment with a constant specific humidity of q_a=15 g kg^?1 confirmed that about 38% of net heat loss was due to the air–sea humidity differences. The time integral of SST cooling closely followed the air–sea heat loss, indicating an approximate one-dimensional vertical heat balance. It was found that the shamal induced convective vertical mixing provided a direct mechanism for the erosion of stratification and deepening of the mixed layer by 30 m. The strong wind not only strengthened the circulation in the entire Persian Gulf but also established a northwestward flowing Iranian Coastal Current (ICC, 25–30 cm s^?1) from the Strait of Hormuz to about 52°E, where it veered offshore. The strongest negative sea level of 25–40 cm was generated in the northernmost portion of the Gulf while the wind setup against the coast of the United Arab Emirates established a positive sea level of 15–30 cm. The transport through the Strait of Hormuz at 56.2°E indicated an enhanced outflow of 0.25 Sv (Sv≡10⁶ m³ s^?1) during 24 November followed by an equivalent inflow on the next day.     

Late Pleistocene to Holocene sedimentation and hydrocarbon seeps on the continental shelf of a steep,tectonically active margin,southern California,USA

Small, steep, uplifting coastal watersheds are prolific sediment producers that contribute significantly to the global marine sediment budget. This study illustrates how sedimentation evolves in one such system where the continental shelf is largely sediment-starved, with most terrestrial sediment bypassing the shelf in favor of deposition in deeper basins. The Santa Barbara–Ventura coast of southern California, USA, is considered a classic area for the study of active tectonics and of Tertiary and Quaternary climatic evolution, interpretations of which depend upon an understanding of sedimentation patterns. High-resolution seismic-reflection data over >570 km² of this shelf show that sediment production is concentrated in a few drainage basins, with the Ventura and Santa Clara River deltas containing most of the upper Pleistocene to Holocene sediment on the shelf. Away from those deltas, the major factor controlling shelf sedimentation is the interaction of wave energy with coastline geometry. Depocenters containing sediment 5–20 m thick exist opposite broad coastal embayments, whereas relict material (bedrock below a regional unconformity) is exposed at the sea floor in areas of the shelf opposite coastal headlands. Locally, natural hydrocarbon seeps interact with sediment deposition either to produce elevated tar-and-sediment mounds or as gas plumes that hinder sediment settling. As much as 80% of fluvial sediment delivered by the Ventura and Santa Clara Rivers is transported off the shelf (some into the Santa Barbara Basin and some into the Santa Monica Basin via Hueneme Canyon), leaving a shelf with relatively little recent sediment accumulation. Understanding factors that control large-scale sediment dispersal along a rapidly uplifting coast that produces substantial quantities of sediment has implications for interpreting the ancient stratigraphic record of active and transform continental margins, and for inferring the distribution of hydrocarbon resources in relict shelf deposits.     

Parameter estimation for basin-scale ecosystem-linked population models of large pelagic predators: Application to skipjack tuna

A Spatial Ecosystem and Population Dynamic Model (SEAPODYM) is used in a data assimilation study aiming to estimate model parameters that describe dynamics of Pacific skipjack tuna population on ocean-based scale. The model based on advection–diffusion–reaction equations explicitly predicts spatial dynamics of large pelagic predators, while taking into account data on several mid-trophic level components, oceanic primary productivity and physical environment. In order to improve its quantitative ability, the model was parameterized through assimilation with commercial fisheries data, and optimization was carried out using maximum likelihood estimation approach. To address the optimization task we implemented an adjoint technique to obtain an exact, analytical evaluation of the likelihood gradient. We conducted a series of computer experiments in order to (i) determine model sensitivity with respect to variable parameters and, hence, investigate their observability; (ii) estimate observable parameters and their errors; and (iii) justify the reliability of the computed solution. Parameters describing recruitment, movement, habitat preferences, natural and fishing mortality of skipjack population were analysed and estimated. Results of the study suggest that SEAPODYM with achieved parameterization scheme can help to investigate the impact of fishing under various management scenarios, and also conduct forecasts of a given species stock and spatial dynamics in a context of environmental and climate changes.     

Spatiotemporal aspects of silica buffering in restored tidal marshes

Losses of pelagic diatom production resulting from silica limitation have not only been blamed for toxic algal blooms, but for the reduction in ability of coastal food webs to support higher trophic levels. Recent research has shown the importance of advective seepage water fluxes of dissolved silica (DSi) from freshwater marshes to pelagic waters during moments of riverine Si-limitation. In this study, we investigated the potential impact of recently installed new tidal areas along the Schelde estuary, located in former polder areas and characterized by so-called controlled reduced tidal regimes (CRT). Nine mass-balance studies were conducted in a newly constructed CRT in the freshwater Schelde estuary. During complete tidal cycles both DSi and amorphous silica (ASi) concentrations were monitored at the entrance culverts and in different habitats in the marsh. A swift DSi-delivery capacity was observed despite the shifted spatiotemporal frame of exchange processes compared to reference marshes. As silica-accumulating vegetation is not yet present, and difference with reference marshes’ deliveries is surprisingly small, we indicate diatomaceous debris and phytoliths to be the main silica source. Although further research is necessary on the driving forces of the different processes involved, restoration of former agricultural areas under CRT-regime provide the potential to buffer silica in the estuary.     

Spurious diapycnal mixing in terrain-following coordinate models: The problem and a solution

In this paper, we identify a crucial numerical problem in sigma coordinate models, leading to unacceptable spurious diapycnal mixing. This error is a by-product of recent advances in numerical methods, namely the implementation of high-order diffusive advection schemes. In the case of ROMS, spurious mixing is produced by its third-order upwind advection scheme, but our analysis suggests that all diffusive advection schemes would behave similarly in all sigma models. We show that the common idea that spurious mixing decreases with resolution is generally false. In a coarse-resolution regime, spurious mixing increases as resolution is refined, and may reach its peak value when eddy-driven lateral mixing becomes explicitly resolved. At finer resolution, diffusivities are expected to decrease but with values that only become acceptable at resolutions finer than the kilometer. The solution to this problem requires a specifically designed advection scheme. We propose and validate the RSUP3 scheme, where diffusion is split from advection and is represented by a rotated biharmonic diffusion scheme with flow-dependent hyperdiffusivity satisfying the Peclet constraint. The rotated diffusion operator is designed for numerical stability, which includes improvements of linear stability limits and a clipping method adapted to the sigma-coordinate. Realistic model experiments in a southwest Pacific configuration show that RSUP3 is able to preserve low dispersion and diffusion capabilities of the original third-order upwind scheme, while preserving water mass characteristics. There are residual errors from the rotated diffusion operator, but they remain acceptable. The use of a constant diffusivity rather than the Peclet hyperdiffusivity tends to increase these residual errors which become unacceptable with Laplacian diffusion. Finally, we have left some options open concerning the use of time filters as an alternative to spatial diffusion. A temporal discretization approach to the present problem (including implicit discretization) will be reported in a following paper.