Molecular Identification and Expression Analysis of Carbonic Anhydrase VII in Pufferfish (Takifugu rubripes)

Ocean Science Journal - A carbonic anhydrase VII gene, encoding 277 amino acids, was identified in the intestinal tissue of pufferfish (Takifugu rubripes). The translated protein with an 833-bp...     

Assessing Cryptic Invasion State: Fine-Scale Genetic Analysis of Ciona savignyi Population in Putative Native Habitat of the Korean Coast

The solitary ascidian, Ciona savignyi (Ascidiacea, Enterogona) is a notorious marine invader still expanding its habitat range worldwide. This species is considered native to the North West Pacific, but its indigeneity in Korean coastal waters has been questioned because of outdated taxonomic records and its inhabitation of oceanographically marginal areas. To clarify their cryptic invasion state, 247 individual C. savignyi samples were collected from 12 harbors and marinas on the Korean coast, and a 744 bp region of mitochondrial DNA (mtDNA) cytochrome c oxidase subunit I gene was sequenced and analyzed. Our analyses of population genetic structure and demographic history provided considerable pieces of evidence supporting their long-term establishment on the Korean coasts: differentiated population genetic structure, sequentially arrayed star-shape haplotype network, neutrality test results of past population expansions, and post-glacial colonization pattern of demography. Consequently, we concluded that C. savignyi populations on the Korean Coast are indigenous rather than exotic. These results could be used as reference data for further phylogeo graphic and demographic studies of problematic Ciona species, and to clarify and resolve similar cryptic invasion states of the other Korean coastal marine organisms. This study is the first to resolve the cryptic in vasion state of Korean marine organisms using genetic analysis.

     

Distribution and Sources of Dissolved and Particulate Heavy Metals (Mn,Co, Ni,Cu, Zn,Cd, Pb) in Masan Bay,Korea

Ocean Science Journal - In this study, we investigated the spatial and temporal distribution and sources of dissolved and particulate heavy metals in Masan Bay, an area that for a long time has...     

Bathymetry enhancement by altimetry-derived gravity anomalies in the East Sea (Sea of Japan)

The gravity-geologic method (GGM) was used to enhance the bathymetry of the East Sea (Sea of Japan) with satellite altimetry-derived free-air gravity anomalies and shipborne depth measurements. By comparison with the bathymetry model of Smith and Sandwell’s (SAS) approach (1994), GGM was found to have an advantage with short wavelength (≤12 km) components, while SAS better predicts longer wavelength (≥25 km) components, despite its dependency on density contrast. To mitigate this limitation, a tuning density contrast of 10.25 g/cm³ between seawater and the seafloor was primarily estimated by the downward continuation method and then validated by the check points method with GGM. Similarly, SAS is limited by the “A” value in low-pass part of the Wiener filter, which defines the effective range of the wavelength components on bathymetry. As a final result, we present an enhanced GGM bathymetry model by integrating all available data.     

Numerical simulation of nearshore circulation on field topography under random wave environment

In order to investigate surf zone hydrodynamics through two-dimensional numerical simulations of nearshore circulation under random wave environment, a nearshore circulation model, SHORECIRC, and a random wave model, SWAN, were combined and utilized. Using this combined model, a numerical simulation of the October 2, 1997 SandyDuck field experiment was performed. For this simulation, field topography and an input offshore spectrum were constructed using observed data sets synchronized with the experiment. The wave-breaking model in SWAN was modified by using breaker parameters varied according to bottom slope. The simulation results were compared with the experimental data, which revealed a well-developed longshore current, as well as with results using other combinations which were SHORECIRC and its original monochromatic wave-driver, and SHORECIRC and the default of SWAN. The results from the novel combined model agreed well with the experimental data. The results of the present simulation also indicate that alongshore field topography influences shear fluctuation of longshore currents.     

Population Genetic Structure of Rock Bream (<Emphasis Type="Italic">Oplegnathus fasciatus</Emphasis> Temminck &amp; Schlegel, 1884) Revealed by mtDNA COI Sequence in Korea and China

The rock bream, Oplegnathus fasciatus, is a common rocky reef game fish in East Asia and recently has become an aquaculture species. Despite its commercial importance, the population genetic structure of this fish species remains poorly understood. In this study, 163 specimens were collected from 6 localities along the coastal waters of Korea and China and their genetic variation was analyzed with mtDNA COI sequences. A total of 34 polymorphic sites were detected which determined 30 haplotypes. The genetic pattern reveals a low level of nucleotide diversity (0.04 ± 0.003) but a high level of haplotype diversity (0.83 ± 0.02). The 30 haplotypes are divided into two major genealogical clades: one that consists of only Zhoushan (ZS, East China Sea) specific haplotypes from the southern East China Sea and the other that consists of the remaining haplotypes from the northern East China Sea, Yellow Sea, Korea Strait, and East Sea/Sea of Japan. The two clades are separated by approximately 330~435 kyBP. Analyses of AMOVA and F_st show a significant population differentiation between the ZS sample and the other ones, corroborating separation of the two genealogical clades. Larval dispersal and the fresh Yangtze River plume are invoked as the main determining factors for this population genetic structure of O. fasciatus. Neutrality tests and mismatch distribution analyses indicate late Pleistocene population expansion along the coastal waters of Korea and China approximately 133–183 kyBP during which there were periodic cycles of glaciations and deglaciations. Such population information needs to be taken into account when stock enhancement and conservation measures are implemented for this fisheries species.     

Characterization of Frequency and Aggregation of the Antarctic Krill (<Emphasis Type="Italic">Euphausia superba</Emphasis>) Using Acoustics

In this study, the dB difference and characteristics of krill swarms inhabiting Subarea 48.1, which includes the west and south of the South Shetland Island and the Elephant Island peripheries, were estimated to distinguish Antarctic krill, using acoustics. From April 13 to 24, 2016, acoustic data were collected along 24 survey lines using the frequencies 38 and 120 kHz, and middle trawling was performed at 7 stations. Using the difference between the dB values of two volume backscattering strength (Sv) frequencies (38 and 120 kHz), a clear acoustic distinction could be made between Antarctic krill (4.9 to 12.0 dB) and fish (?4.0 to ?0.2 dB). The distributions and mean Sv of krill swarms in the Elephant Island peripheries and south of South Shetland Island were higher than those in the west of South Shetland Island. The mean length/ height ratio of krill swarms in the west of the South Shetland Island (64.5) was higher than that in the south (35.9) and the Elephant Island peripheries (33.8), with the length of the aggregations exceeding their height. Most krill swarms were distributed between the surface layer (less than 10 m below sea level) and within 200 m of water depth. These results are expected to serve as baseline data for evaluating krill density and biomass by distinguishing them from fish, using acoustics.     

Benthic habitat quality change as measured by macroinfauna community in a tidal flat on the west coast of Korea

Yellow Sea tidal flats are internationally recognised for their contribution to biological diversity and yet are under enormous pressure from reclamation, pollution and overexploitation. The benthic macroinfauna community is the dominant community on these tidal flats and a reliable indicator of benthic environmental changes. We surveyed the current benthic macroinfauna community of the Ganghwa Southern Tidal Flat, the largest remaining Korean mud flat in the Yellow Sea, in order to examine changes in the environmental situation of this benthic ecosystem. The results show a significant decline in species diversity from the last survey made in 2003, and a shift in species composition with appearances of polychaetes indicative of pollution and physical disturbances and other opportunistic species becoming dominant in both density and biomass. The benthic community shift observed during the two study periods may be associated with increased nutrient pollution as well as increased physical disturbances in this area. However, we recognise the limitations of the data both in frequency and scope but believe the significant changes to the composition of the benthic fauna are sufficient to warrant concern. Observations are required to examine the extent to which these human activities induce benthic community shift in this tidal flat.     

Pathologic survey on the Manila clam <Emphasis Type="Italic">Ruditapes philippinarum</Emphasis> (Adams and Reeve 1850) from Haeju off the western coastal Yellow Sea

Pathologic condition of Manila clam, Ruditapes philippinarum collected from Haeju off the west coast of North Korea in February and March 2007 was investigated in this study. The diagnostics included a protozoan parasite, Perkinsus olseni, the brown ring disease (BRD) caused by bacteria Vibrio tapetis and metazoan parasites Trematod and Cestod. P. olseni infection was examined using histology and Ray’s fluid thioglycollate medium (RFTM) assay along with Choi’s NaOH digestion technique. Trematode and cestode infection was also examined from the histology. A total of 140 clams with 35–45 mm in shell length (2–3 years old) were analyzed. Condition factor (CF), a ratio of the wet tissue weight to the shell dry weight, ranged from 0.445±0.074 (February) to 0.544±0.132 (March). Total body burden of P. olseni (i.e. infection intensity) ranged from 18,644±37,755 (February) to 26,933±80,611 cells/g wet tissue (March) with the prevalence of 76.7–43.3% (March) respectively. Prevalence of trematode and cestode infection in February and March varied 22.5–25.0 and 15.0–22.5% respectively. Infection intensity of V. tapetis ranged 1–2 and the prevalence was 1.4 (February) and 5.7% (March). Prevalence and infection intensity of P. olseni in clams from Haeju was comparatively lower than those of clams reported on the west coast of Korea. BRD and the other metazoan parasite infection were also relatively lower or similar to the condition of the clams reported previously. CF of Haeju clams was also relatively higher than the clams in Gyeonggi Bay and Taean, suggesting that Haeju clams had relatively better pathologic and health condition.     

Cryopreservation of Veliger Larvae of Trumpet Shell,Charonia sauliae: an Essential Preparation to Artificial Propagation

Trumpet shell, Charonia sauliae, is an endangered and valuable species, but its artificial propagation protocol has not been successfully established. To estimate the possibility of cryopreservation for larvae of C. sauliae, which is a potential preparation for its artificial reproduction and further research, in this study a protocol for the cryopreservation of veliger larvae of trumpet shell was optimized. Through a two-step cryopreservation procedure, four kinds of cryoprotectants (ethylene glycol, 1, 2-propanediol,dimethyl sulfoxide and glycerol) were employed at three concentrations (1.0, 1.5 and 2.0 molL-1) respectively and survival rates of larvae were determined after a storage of 1h. The larvae frozen with these four cryoprotectants after 1h storage were cultured, and then survival rates were determined at 24, 72 and 120h after thawing. Dimethyl sulfoxide at a concentration of 1.5 molL-1 showed the best protective effect in all experiments (p<0.05). And survival rates of larvae frozen with dimethyl sulfoxide were determined after 1,7 and 15 d of storage. The survival rates of larvae frozen with 1.5 molL-1 dimethyl sulfoxide after 1h, 1d, 7 d and 15 d of storage were 80.77% ±7.51%, 80.34% ±11.28%, 83.10% ±9.14% and 77.23%±6.22% respectively. No significant differences in survival rates of larvae frozen with dimethyl sulfoxide were observed after various storage periods (p>0.05).