Protein expression signatures: an application of proteomics

The methods of proteomics, the study of the protein complement of the genome, are applicable to environmental testing. Sets of proteins specific to different stressors can be isolated using computer imaging software. Individual proteins can be identified by mass spectrometry. The Protein Expression Signatures (PES) obtained have potential in diagnosing adverse factors in the environment. The challenge is to demonstrate their feasibility in complex environments. We have shown that PES for three endocrine disrupting compounds in trout (Onchorhynchus mykiss), can be detected in mixed sewage effluent. Other studies support these results. As protein databases expand, identification becomes routine, and capture molecules specific to each protein are developed, the possibility of simple field tests for multiple stressors becomes real.     

Investigation of Cd, Cu, Ni and Th in the colloidal size range in the Gulf of Maine

Size-fractionated seawater samples were collected from the Gulf of Maine to determine the fraction (f_c/d) of total dissolved (< 1 μm) Cd, Cu, Ni and ²³⁴Th in the colloidal size range (1,000 nominal molecular weight, NMW, to 1 μm) using cross-flow filtration. Colloidal Cd, Cu and Ni represents < 1–7% of the total dissolved concentration in these shelf waters and increases with an increase in particle concentration. By comparison, results obtained for particle-reactive ²³⁴Th indicate that < 1–47% of total dissolved is associated with the colloidal size fraction. A revised relationship between the concentration of colloids (C_c) and suspended particles (C_p) is reported (log C_c = 0.66 log C_p −2.01 kg L⁻¹) and used to examine the dependence of f_c/d for these metals on the concentration of suspended particles for C_p = 0.01–100 mg L⁻¹. Results indicate that a significant fraction (˜ 10–30%) of Cd, Cu, Ni and ²³⁴Th in the traditionally defined ‘dissolved’ fraction may exist in the colloidal size range in regions characterized by high particle concentrations (C_p > 1–10 mg L⁻¹), such as in near-shore and estuarine waters.     

Eocene migmatite formation and diachronous burial revealed by petrochronology in NW Himalaya,Zanskar

In this contribution, we highlight the importance of in-situ monazite geochronology linked to P−T modelling for identification of timescales of metamorphic processes. Barrovian-type micaschists, migmatites and augengneiss from the Gumburanjun dome in the southeastern extremity of the Gianbul dome, NW Himalaya, have been studied in order to correlate the early stages of Himalayan metamorphism at different crustal levels and infer the timing of anatexis. P−T−t paths are constrained through combined pseudosection modelling and in-situ and in-mount monazite and xenotime laser ablation–split-stream inductively coupled plasma-mass spectrometry. Petrography and garnet zoning combined with pseudosection modelling show that garnet-staurolite schists record burial from ~530 to 560°C and 5.5 kbar to ~630 to 660°C and 7 kbar; staurolite-kyanite schists from ~530 to 560°C and 5 kbar to ~670 to 680°C and 7−9 kbar; and garnet-kyanite migmatites from 540−570°C and 5 kbar to ~680 to 750°C and 7−10 kbar, probably also to >750°C and >9 kbar above the muscovite stability field. The decompression paths of garnet-staurolite schists indicate cooling on decompression, while garnet rim chemistry and local sillimanite growth point to a stage of re-equilibration at ~600 to 670°C and 4−6 kbar in some of the staurolite-kyanite schists, and at ~670 to 700°C and 6 kbar in garnet-kyanite migmatites. Some of the staurolite-kyanite schists and garnet-kyanite migmatites also contain andalusite or andalusite-cordierite. Monazite and xenotime were analysed in thin sections in garnet, staurolite and kyanite, and in the matrix; and in mounts. BSE images and compositional maps of monazite (xenotime was too small) show variable internal structures from homogeneous through patchy zoning with embayed to sharp boundaries. Two groups of samples can be identified on the basis of the presence or absence of c. 44 − 37 Ma ages. The first group of samples—two garnet-staurolite schists—recorded only c. 31 − 27 Ma ages in porphyroblasts and no c. 40 Ma ages. The second group (samples of staurolite-kyanite schist, garnet-kyanite migmatites, augengneiss) have both the older, c. 44 − 37 Ma monazite ages in porphyroblasts and younger ages down to c. 22 Ma. These significantly different ranges of ages from porphyroblasts of 44−37 Ma, and 31−27 Ma, are interpreted as the duration of prograde P−T paths in Eocene and Oligocene, and indicate diachronous two-stage burial of rocks. Early migmatization occurred at 38 Ma. The c. 29 Ma is interpreted as the time when rocks from the lower and middle crustal levels were partially exhumed and came in to contact with rocks that were downgoing at this time. Localized monazite recrystallization is as young as 26−24 Ma. The youngest ages of 23−22 Ma are related to leucogranite emplacement.     

Characterising the intermediate depth waters of the Pacific Ocean using δ13C and other geochemical tracers

Evidence from geochemical tracers (salinity, oxygen, silicate, nutrients, alkalinity, dissolved inorganic carbon (DIC), carbon isotopes (δ¹³C_DIC) and radiocarbon (Δ¹⁴C)) collected during the Pacific Ocean World Ocean Circulation Experiment (WOCE) voyages (P10, P15, P17 and P19) indicate there are three main water types at intermediate depths in the Pacific Ocean; North Pacific Intermediate Water (NPIW), Antarctic Intermediate Water (AAIW) and Equatorial Pacific Intermediate Waters (EqPIW). We support previous suggestions of EqPIW as a separate equatorial intermediate depth water as it displays a distinct geochemical signature characterised by low salinity, low oxygen, high nutrients and low Δ¹⁴C (older radiocarbon). Using the geochemical properties of the different intermediate depth waters, we have mapped out their distribution in the main Pacific Basin.From the calculated pre-formed δ¹³C_air–sea conservative tracer, it is evident that EqPIW is a combination of AAIW parental waters, while quasi-conservative geochemical tracers, such as radiocarbon, also indicate mixing with old upwelling Pacific Deep Waters (PDW). The EqPIW also displays a latitudinal asymmetry in non-conservative geochemical tracers and can be further split into North (NEqPIW) and South (SEqPIW) separated at ～2°N. The reason for this asymmetry is caused by higher surface diatom production in the north driven by higher silicate concentrations.The δ¹³C signature measured in benthic foraminifera, Cibicidoides spp. (δ¹³C_Cib), from four core tops bathed in AAIW, SEqPIW and NPIW, reflects that of the overlying intermediate depth waters. The δ¹³C_Cib from these cores show similarities and variations down-core that highlight changes in mixing over the last 30,000 yr BP. The reduced offset between the δ¹³C_Cib of AAIW and SEqPIW during the last glacial indicates that AAIW might have had an increased influence in the eastern equatorial Pacific (EEP) region at this time. Additional intermediate depth cores and other paleo-geochemical proxies such as Cd/Ca and radiocarbon are required from the broader Pacific Ocean to further understand changes in intermediate depth water formation, circulation and mixing over glacial/interglacial cycles.