Microbial photosynthesis in coral reef sediments (Heron Reef, Australia)

We investigated microphytobenthic photosynthesis at four stations in the coral reef sediments at Heron Reef, Australia. The microphytobenthos was dominated by diatoms, dinoflagellates and cyanobacteria, as indicated by biomarker pigment analysis. Conspicuous algae firmly attached to the sand grains (ca. 100 μm in diameter, surrounded by a hard transparent wall) were rich in peridinin, a marker pigment for dinoflagellates, but also showed a high diversity based on cyanobacterial 16S rDNA gene sequence analysis. Specimens of these algae that were buried below the photic zone exhibited an unexpected stimulation of respiration by light, resulting in an increase of local oxygen concentrations upon darkening. Net photosynthesis of the sediments varied between 1.9 and 8.5 mmol O₂ m⁻² h⁻¹ and was strongly correlated with Chl a content, which lay between 31 and 84 mg m⁻². An estimate based on our spatially limited dataset indicates that the microphytobenthic production for the entire reef is in the order of magnitude of the production estimated for corals. Photosynthesis stimulated calcification at all investigated sites (0.2–1.0 mmol Ca²⁺ m⁻² h⁻¹). The sediments of at least three stations were net calcifying. Sedimentary N₂-fixation rates (measured by acetylene reduction assays at two sites) ranged between 0.9 to 3.9 mmol N₂ m⁻² h⁻¹ and were highest in the light, indicating the importance of heterocystous cyanobacteria. In coral fingers no N₂-fixation was measurable, which stresses the importance of the sediment compartment for reef nitrogen cycling.     

Nutrients and zooplankton composition and dynamics in relation to the hydrological pattern in a confined Mediterranean salt marsh (NE Iberian Peninsula)

The role of the hydrological regime in the nutrients and zooplankton composition and dynamics has been analysed in five lagoons of La Pletera salt marshes (NE Iberian Peninsula) during a complete hydrological cycle (2002–2003). Two of the lagoons have their origin in the old river mouths while the other three were recently created in the framework of a Life Restoration project. This fact has also allowed us to study the effect of the lagoon age on nutrient and zooplankton composition and dynamics. The salt marsh hydrology is determined by a prolonged period of confinement without water inputs, irregularly interrupted by sudden water inputs due to flooding events (sea storms or intense rainfalls). While the dynamics of oxidized nitrogen compounds in the lagoons depends on the water inputs variability within each hydrological cycle, the internal load of phosphorus, total nitrogen and organic matter is related more to the cumulative mechanisms during the confinement periods. Accumulation processes may be easily related to lagoon age, since old lagoons have higher content of nutrients and organic matter, suggesting that these lagoons progressively accumulate nutrients during the successive confinement events. This is the usual case for most Mediterranean salt marshes without an artificially manipulated water regime. The zooplankton community in La Pletera integrates the effects of both the hydrological regime and the lagoon age since the former determines the temporal pattern of the main zooplankton species and the latter explains differences in composition and structure between old and new lagoons.     

Relocation effects of dredged marine sediments on mercury geochemistry: Venice lagoon,Italy

Understanding the biogeochemical process of Hg is critical in the overall evaluation of the ecological impacts resulting from the reuse of Hg-contaminated dredged sediment. Sediment banks (V1 and V2) were constructed with freshly dredged sediments from a navigational channel in Venice Lagoon, Italy, with the goal of clarifying potential differences in the biogeochemistry of Hg between the reused dredged sediments and those from surrounding sites (SS1 and S2). Toward this purpose, Hg and monomethylmercury (MMHg) concentrations, and Hg methylation rates (MMRs) in the surface 2.5 cm sediments were monitored, along with ammonium, iron, sulfate and sulfide concentrations in the pore waters of banks and surrounding sites from November 2005 to February 2007. Pore water analyses indicate that the bank sediments are characterized by lower levels of sulfate and iron, and by higher levels of ammonium and sulfide compared to the surrounding sediments. With respect to Hg speciation, the fractions of MMHg in total Hg (%MMHg/Hg) and the MMRs were significantly lower in the bank V1 compared to those in the reference site SS1, whereas the %MMHg/Hg and the MMRs were similar between V2 and S2. A negative correlation is found between the logarithm of the particle-water partition coefficient of Hg and the MMR, indicating that the reduced MMRs in V1 are caused by the limited concentrations of dissolved Hg. Organic matter appears to play a key role in the control of MMR via the control of Hg solubility.     

Genetic variability of the blue and red shrimp Aristeus antennatus in the Western Mediterranean Sea inferred by DNA microsatellite loci

Genetic variation at eight microsatellite loci was studied in nine populations of the blue and red shrimp Aristeus antennatus to investigate whether distinct stocks are present in the Western Mediterranean Sea. A high level of gene flow and no evidence of genetic partitioning were discovered. No significant variation was found (F_ST = 0.00673, P-value = 0.067) even when shrimps from exploited and those from deep-water unexploited grounds were compared. No evidence of reduction or expansion of population size in the recent past was found, as indicated by the bottleneck and interlocus g-tests. Our results are consistent with previous studies using mitochondrial gene methods and allozymes, indicating that, for this species, extensive pelagic larval dispersal and adult migration are probably responsible for the genetic homogeneity observed. In particular, due to a different bathymetric distribution of males and females, reported to be associated with different water masses and hence with possible differential dispersal capacity between sexes, the hypothesis of sex-biased dispersal was tested. Mean values of corrected assignment indices and mean relatedness values were higher for males, suggesting that females are the more widely dispersing sex. Molecular assessment of A. antennatus from the Western Mediterranean provides data of biological and evolutionary interest for the successful management of such a highly valuable fishery resource.     

Patterns in the abundance of hyperbenthic zooplankton and colonization of marine benthic invertebrates on the seafloor of Saanich Inlet,a seasonally hypoxic fjord

This study describes changes in abundance of hyperbenthic zooplankton (including meroplankton) and benthic colonists at the seasonally hypoxic seabed of Saanich Inlet, British Columbia, Canada. We used the Victoria Experimental Network Under the Sea (VENUS) cabled observatory to measure water properties and to sample hyperbenthos with a sediment trap at 97 m from September 2008 to September 2009. Some faunal groups exhibited seasonal reproduction, and abundance peaked during their reproductive periods. These included larvae of the barnacle Balanus crenatus, and the crabs Petrolisthes eriomerus, Oregonia gracilis, and Lophopanopeus bellus bellus. Other groups were most abundant in spring and summer when food and oxygen levels were highest and temperature was lowest. These included cumaceans, the siphonophore Diphyes sp., the bryozoan Triticella pedicellata, and tintinnids. We also collected benthic colonists, predominantly bryozoans and polychaetes, on colonization plates deployed in spring/summer 2008, fall 2008/winter 2009, and spring/summer 2009. The total abundance of colonists and of bryozoans did not vary seasonally or with substrate complexity, whereas polychaetes were more numerous in spring/summer deployments and on a highly complex substrate. Taxon richness of colonists was higher in spring/summer 2008 than in fall 2008/winter 2009, whereas an anoxic episode in spring/summer 2009 reduced richness to similar values with that of fall 2008/winter 2009 levels. Substrate complexity had no effect on richness. Juvenile squat lobsters, digitally imaged in fall 2008/winter 2009, were most numerous when oxygen levels were lowest and potentially excluding larger predators. Our study illustrates how season, food availability, temperature, and oxygen can interact to shape community structure in a seasonally hypoxic habitat.     

Root‐related rhodochrosite and concretionary siderite formation in oxygen‐deficient conditions induced by a ground‐water table rise

Sedimentological, mineralogical, stable carbon and oxygen isotope determinations and biomarker analyses were performed on siderite concretions occurring in terrestrial silts to understand their formation and to characterize the sedimentary and diagenetic conditions favouring their growth. High δ¹³C values (6·4‰ on average) indicate that siderite precipitated in an anoxic environment where bacterial methanogenesis operated. The development of anoxic conditions during shallow burial was induced by a change in sedimentary environment from flood plain to swamp, related to a rise of the ground‐water table. Large amounts of decaying plant debris led to efficient oxygen consumption within the pore‐water in the peat. Oxygen depletion, in combination with a decrease in sedimentation rate, promoted anoxic diagenetic conditions under the swamp and favoured abundant siderite precipitation. This shows how a change in sedimentary conditions can have a profound impact on the early‐diagenetic environment and carbonate authigenesis. The concretions contain numerous rhizoliths; they are cemented with calcium‐rhodochrosite, a feature which has not been reported before. The rhodochrosite cement has negative δ¹³C values (?16·5‰ on average) and precipitated in suboxic conditions due to microbial degradation of roots coupled to manganese reduction. The exceptional preservation of the epidermis/exodermis and xylem vessels of former root tissues indicates that the rhodochrosite formed shortly after the death of a root in water‐logged sediments. Rhodochrosite precipitated during the initial stages of concretionary growth in suboxic microenvironments within roots, while siderite cementation occurred simultaneously around them in anoxic conditions. These suboxic microenvironments developed because oxygen was transported from the overlying oxygenated soil into sediments saturated with anoxic water via roots acting as permeable conduits. This model explains how separate generations of carbonate cements having different mineralogy and isotopic compositions, which would conventionally be regarded as cements precipitated sequentially in different diagenetic zones during gradual burial, can form simultaneously in shallow burial settings where strong redox gradients exist around vertically oriented permeable root structures.     

A semi-continuous measurement of gaseous ammonia and particulate ammonium concentrations in PM<Subscript>2.5</Subscript> in the ambient atmosphere

Ammonia has a short residence time in the atmosphere and rapidly neutralizes acid gases that occur near its source, requiring a rapid measurement system for ammonia and particulate ammonium concentrations to better understand their sources, temporal variation of ammonia emissions, and the formation of secondary ammonium aerosols. A semi-continuous measurement system, consisting of a diffusion scrubber, a particle growth chamber, an air-liquid separator, and a fluorescent detector, was developed to determine both gaseous ammonia (NH₃) and particulate ammonium (NH ₄ ⁺ ) in PM_2.5 in the ambient atmosphere of Gwangju, South Korea, during the months of March, April, July, and September of 2007. During the sampling periods, the average concentrations of ammonia and ammonium were found to be 2.33?±?1.29 μg/m³ and 1.89?±?0.99 μg/m³, respectively. Although the average gaseous ammonia concentration was highest in March, the particulate ammonium concentration was higher during the warmer season, reaching 2.08?±?1.07 μg/m³ and 2.32?±?0.94 μg/m³ in April and July, respectively, while only 1.68?±?0.61 μg/m³ in March and 1.24?±?0.99 μg/m³ in September. It is proposed that the higher availability of acid species during the warmer months produced a significant amount of particulate ammonium sulfate. Diurnal fluctuation of ammonia and ammonium during the warmer months showed that their peak time occurred at approximately 10:00 am. Both ammonia and ammonium concentrations were better correlated during the warmer months than during the cooler months. Further, the data suggest that the ammonia and ammonium were measured under well dispersed conditions, and multiple sources contributed to the ammonia at the sampling site.     

Melt Pockets in Garnet Megacrysts from Cenozoic Alkali Basalts of the Shavaryn Tsaram Vicinity, Mongolia

Garnet megacryst with a multiphase inclusion from intraplate alkali basalts of the Shavaryn Tsaram(Tariat,Mongolia)was the object of the study.This unusual aggregate consists of porous glass,Ti-rich biotite,orthopyroxene,spinel,clinopyroxene,olivine,and ilmenite.Win TWQ 2.32 thermodynamic simulation of this system revealed a few intervals of equilibrium.Pressure and temperature adjustment reflected in the paragenetic minerals of the melt pocket.The capture of already crystallised garnet megacryst was at P=0.8-1 GPa and T=1120-1160℃.Mineral crystallisation inside the melt pocket,accompanied by external inputs,occurred at P=0.75-0.95 GPa;T=790-1120℃.Symplectite assemblage formed in the garnet megacryst due to decomposition at(P=0.55-0.7 GPa;T=850-930℃).The study of the oxygen isotope content in primary garnet and biotite of the melt pocket showed that the δ¹⁸O_VSMOW values are the same and correspond to that of typical mantle xenoliths.However,the chemical and microcomponent composition of the melt pocket minerals reveals a material that differs from basalts and peridotites.Thus,it has been revealed that the multiphase inclusion in the garnet megacryst formed not only on account of the garnet’s substance,but also due to the entrapped material of the Earth’s interior.     

The effects of beach nourishment on the sandy-beach amphipod Exoediceros fossor: impact and recovery in Botany Bay, New South Wales, Australia

Beach nourishment is increasingly being implemented to address problems of erosion. However, the ecological consequences of nourishment are poorly understood, especially in Australia. In Botany Bay, sand was piped from an intertidal borrow area at Elephant's Trunk to nourish the nearby eroding beach at Towra Point. The effects on an intertidal exoedicerotid amphipod, Exoediceros fossor (Stimpson, 1856), were examined using a beyond-BACI (Before–After, Control–Impact) sampling design. Sampling was conducted before and after engineering operations at sites within the borrow and nourishment locations and multiple control locations. Hypotheses concerning impact and recovery were tested using asymmetrical ANOVAs and two-tailed F-tests. These examined the effects on abundance and spatial variability, respectively. The impact of the engineering operations on abundance was very large at both borrow and nourishment locations. However, recovery started within several weeks and, using space × time interactions as a criterion, appeared to be complete within a year. This conclusion is made cautiously because of low statistical power and because other criteria for recovery suggest that it was not complete at some sites. As beach erosion is likely to increase in severity with rising sea levels and greater storm surges associated with climate change, management authorities will need a better understanding of the ecological effects of beach nourishment.     

Petroleum-related hydrocarbons in deep and subsurface sediments from South-Western Barents Sea

Subsurface sediments from a pockmark area in South-Western Barents Sea have been earlier found to contain elevated levels of petroleum-related polycyclic aromatic hydrocarbons. This work describes a comprehensive analysis of various biomarkers, including the highly source-specific hopanes, in a 4.5?m long gravity core from the same area, together with subsurface sediment samples from other areas in the region without pockmarks present ("background samples"). A clear difference between the pockmark gravity core and the background sediment cores was found, both with regard to genesis and the level of transformation of organic matter. A number of indicator parameters, such as methylphenanthrene index (MPI-1), point towards a significantly higher maturity of hydrocarbons in the pockmark core throughout its length as compared to the other sampled locations. Higher contents of microbial hopanoids (hopenes) may indicate the former presence of petroleum. These findings confirm the hypothesis of a natural hydrocarbon source in the deeper strata present in the studied location with pockmarks.